mRNA_A-nodosum_M_contig101.34.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig101.34.1
Unique NamemRNA_A-nodosum_M_contig101.34.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig101.34.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig101contigA-nodosum_M_contig101:488443..489694 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size424
Hectar predicted targeting categoryother localisation
Exons3
Cds size423
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866367.9176812-CDS-A-nodosum_M_contig101:488442..4886261680866367.9176812-CDS-A-nodosum_M_contig101:488442..488626Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig101 488443..488626 +
1680866367.9283836-CDS-A-nodosum_M_contig101:489063..4892551680866367.9283836-CDS-A-nodosum_M_contig101:489063..489255Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig101 489064..489255 +
1680866367.9411628-CDS-A-nodosum_M_contig101:489646..4896931680866367.9411628-CDS-A-nodosum_M_contig101:489646..489693Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig101 489647..489693 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig101.34.1prot_A-nodosum_M_contig101.34.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig101 488443..489693 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig101.34.1

>prot_A-nodosum_M_contig101.34.1 ID=prot_A-nodosum_M_contig101.34.1|Name=mRNA_A-nodosum_M_contig101.34.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=141bp
ASRGAAANFLKQGSSTPTIPDDAVFVGRVVDNAGGCSQRESKSPSLGNPG
ARSQKNPTPREGANTQLVQSGSFREATMYVSNSGNPLVIRPTATTTTETP
CVSVQPPLPVLPGIVEALGAKRGSQDDAHERVCHVASCEQV
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mRNA from alignment at A-nodosum_M_contig101:488443..489694+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig101.34.1 ID=mRNA_A-nodosum_M_contig101.34.1|Name=mRNA_A-nodosum_M_contig101.34.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1252bp|location=Sequence derived from alignment at A-nodosum_M_contig101:488443..489694+ (Ascophyllum nodosum dioecious)
GCATCTCGTGGAGCTGCAGCCAATTTCCTTAAACAAGGATCTTCCACTCC
AACGATACCGGACGATGCGGTCTTCGTAGGGCGAGTGGTCGATAACGCCG
GAGGATGTTCTCAAAGGGAGTCAAAGTCTCCCTCGCTTGGCAACCCAGGG
GCGCGCTCCCAAAAGAACCCAACGCCTAGAGAAGGTTGGTTGTCGATTGC
CGGTTAAAGCGGCTGAGCTCTTATAGATACCTGACTTCATCAAATCCATT
TAACCGAAGTAAGTGCCAGATCCTTAACCGCTGCAGCTCATCATCATTGT
GCGCGAGACTGCTGTTGGGATGAGTACTGGTGGTAGTGCATACAAACCCC
CCTTTCATTCTGGCGGAATCGCTGCAGCGCTTGACGGATGTGGTTCCATG
AAGGCGATGGTGAAAGTTAGCCCAACCTTTCCCGGCTCGACTGCTTTAAG
ACACTTTCCTCATCTGCGTGGAACTCAGCAGAATACGATGCCTTCCTTTC
CTCTACAAATTCTAATCCAACGCATCCGGAGCCGCCGCCTATGAGAGCTC
AATCATATTTTAATCGAAACTGTTGTGTGTGCATTTTTTTTCACCTTTGC
CCCTCGCTTTCCTGCCGTCAGGCGCCAATACCCAGCTTGTTCAGTCAGGG
AGCTTCCGTGAAGCAACGATGTATGTCTCCAACTCGGGGAACCCGCTCGT
GATACGCCCCACTGCTACTACAACCACTGAGACTCCCTGCGTATCAGTTC
AACCACCCTTGCCCGTCCTACCTGGAATTGTAGAGGCTTTGGGGGCGAAG
AGGGGCTCTCAAGGTGCGCAAACCTGGCTGCAGAACATGATCTGTTCGTG
CTCTGCTGGTTCAAGAAGATCGTACAAAACTATCGCCTACGATCGGGGTT
TTTCGATTGGCGACAGTCAGCGAGCGATTCGTGCTGCTCAAGTATCAACC
TGACCATTTCTCGTTATAACTATTACCTTCGAACTTGACGAGCACCACTA
CCTCGTCACTTTTTATGCTTGATTGACATCCTCCCGGATGTTCCTTTTTC
GTGCTCGTCATAACGAGCACTTTGTAGGTTACCATAAAGGTATTCCGTAG
ACGCAGAACGTGGTTAGTAGTGACCTGACCGACGACCCTTTCTTTCGTAG
CTATAACAATGGCCTTTGACAGCGATTGTCAATAACCGTCAACCATTCGA
CCAGACGACGCCCACGAGAGGGTTTGCCACGTCGCTAGCTGTGAGCAAGT
CG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig101:488443..489694+

>mRNA_A-nodosum_M_contig101.34.1 ID=mRNA_A-nodosum_M_contig101.34.1|Name=mRNA_A-nodosum_M_contig101.34.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=423bp|location=Sequence derived from alignment at A-nodosum_M_contig101:488443..489694+ (Ascophyllum nodosum dioecious)
GCATCTCGTGGAGCTGCAGCCAATTTCCTTAAACAAGGATCTTCCACTCC
AACGATACCGGACGATGCGGTCTTCGTAGGGCGAGTGGTCGATAACGCCG
GAGGATGTTCTCAAAGGGAGTCAAAGTCTCCCTCGCTTGGCAACCCAGGG
GCGCGCTCCCAAAAGAACCCAACGCCTAGAGAAGGCGCCAATACCCAGCT
TGTTCAGTCAGGGAGCTTCCGTGAAGCAACGATGTATGTCTCCAACTCGG
GGAACCCGCTCGTGATACGCCCCACTGCTACTACAACCACTGAGACTCCC
TGCGTATCAGTTCAACCACCCTTGCCCGTCCTACCTGGAATTGTAGAGGC
TTTGGGGGCGAAGAGGGGCTCTCAAGACGACGCCCACGAGAGGGTTTGCC
ACGTCGCTAGCTGTGAGCAAGTC
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