mRNA_A-nodosum_M_contig1009.25.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1009.25.1
Unique NamemRNA_A-nodosum_M_contig1009.25.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1009.25.1 vs. uniprot
Match: A0A835ZAU1_9STRA (Triosephosphate/phosphate translocator n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAU1_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.880e-8
Identity = 40/106 (37.74%), Postives = 62/106 (58.49%), Query Frame = 1 
Query:    4 MEGYKIKNAHDA-----TGGMTLKWTQEELPWRVAACGVLHYLRNVMAFHALSAVHPVTYAIGSSMTWVAISTSMAVEFKPAVVPMTTLGSAIVITGTLLYFLAQA 306
            +EG KI++A +       GG    WT         ACG+ +YL N +AF AL  VHP+T+A+G+++  V I  +  + F   + PM+  GSA+ ++GTLLY LA++
Sbjct:  273 VEGSKIQSAFETGIAGYVGGANKFWTH------FFACGLSYYLYNEVAFLALGQVHPITHAVGNTIKRVVILIASVIAFGTKMRPMSIAGSAMAVSGTLLYSLAKS 372
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BLAST of mRNA_A-nodosum_M_contig1009.25.1 vs. uniprot
Match: B5AJS9_GALSU (Sugar-phosphate:phosphate translocator, DMT family n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=B5AJS9_GALSU)

HSP 1 Score: 63.9 bits (154), Expect = 5.000e-7
Identity = 35/92 (38.04%), Postives = 55/92 (59.78%), Query Frame = 1 
Query:   37 ATGGMTLKWTQEELPWRVAACGVLHYLRNVMAFHALSAVHPVTYAIGSSMTWVAISTSMAVEFKPAVVPMTTLGSAIVITGTLLYFLAQAFF 312
            AT G T   T  +L   +   G+  YL N +AF+AL +VHP+T+++G++M  V I  +  + FK  + P   +GSAI I+G LLY L + ++
Sbjct:  314 ATSGKT---TSMQLITGLLTSGLFFYLYNEVAFYALDSVHPITHSVGNTMKRVVIIITSLLVFKNPITPANAIGSAIAISGVLLYSLTKYYY 402
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BLAST of mRNA_A-nodosum_M_contig1009.25.1 vs. uniprot
Match: A0A7S0BWP6_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BWP6_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 2.100e-5
Identity = 32/81 (39.51%), Postives = 47/81 (58.02%), Query Frame = 1 
Query:   70 EELPWRVAACGVLHYLRNVMAFHALSAVHPVTYAIGSSMTWVAISTSMAVEFKPAVVPMTTLGSAIVITGTLLYFLAQAFF 312
            +EL   +   G+ HYL N + + ALS VHPVT A+G++M  V I  +  + F+  V     +GSAI I+G LLY L +  +
Sbjct:   94 KELVKSIIISGLFHYLNNEVMYMALSNVHPVTLAVGNTMKRVFIMVASVLVFRNPVSVQAGIGSAIGISGVLLYSLTKQHY 174
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BLAST of mRNA_A-nodosum_M_contig1009.25.1 vs. uniprot
Match: A0A7S0I4T5_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0I4T5_9EUKA)

HSP 1 Score: 57.4 bits (137), Expect = 6.450e-5
Identity = 32/81 (39.51%), Postives = 52/81 (64.20%), Query Frame = 1 
Query:   61 WTQEELPWRVAACGVLHYLRNVMAFHALSAVHPVTYAIGSSMTWVAISTSMAVEFKPAVVPMTTLGSAIVITGTLLYFLAQ 303
            +T  +L   ++  G L+Y+ N +AF AL+ V PVT+A+ +++  V I  +  + FK ++ P+  LGSAI I+G LLY LA+
Sbjct:  352 YTNAQLIKLLSVSGFLYYIYNEVAFLALAEVAPVTHAVTNTVKRVVIILASILVFKTSITPLGALGSAITISGALLYGLAK 432
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1009.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835ZAU1_9STRA1.880e-837.74Triosephosphate/phosphate translocator n=1 Tax=Tri... [more]
B5AJS9_GALSU5.000e-738.04Sugar-phosphate:phosphate translocator, DMT family... [more]
A0A7S0BWP6_9STRA2.100e-539.51Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S0I4T5_9EUKA6.450e-539.51Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1009contigA-nodosum_M_contig1009:222267..226643 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LC95
Preferred nameSLC35E3
PFAMsTPT
Model size2153
Max annot lvl2759|Eukaryota
KEGG koko:K06643,ko:K15283,ko:K15285
KEGG TC2.A.7.9
KEGG Pathwayko01522,ko01524,ko04068,ko04110,ko04115,ko04120,ko04144,ko04151,ko04218,ko04919,ko05165,ko05169,ko05200,ko05202,ko05203,ko05205,ko05206,ko05214,ko05215,ko05218,ko05219,ko05220,map01522,map01524,map04068,map04110,map04115,map04120,map04144,map04151,map04218,map04919,map05165,map05169,map05200,map05202,map05203,map05205,map05206,map05214,map05215,map05218,map05219,map05220
Hectar predicted targeting categoryother localisation
Exons4
Evalue7.54e-11
EggNOG OGsKOG1441@1|root,KOG1441@2759|Eukaryota
EC2.3.2.27
Descriptioncarbohydrate transport
Cds size321
COG categoryZ
BRITEko00000,ko00001,ko01000,ko02000,ko04121,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1009.25.1prot_A-nodosum_M_contig1009.25.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1009 225646..226640 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866367.6192796-UTR-A-nodosum_M_contig1009:222266..2236721680866367.6192796-UTR-A-nodosum_M_contig1009:222266..223672Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1009 222267..223672 -
1680866367.6356096-UTR-A-nodosum_M_contig1009:225222..2256451680866367.6356096-UTR-A-nodosum_M_contig1009:225222..225645Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1009 225223..225645 -
1680866367.6800966-UTR-A-nodosum_M_contig1009:226640..2266431680866367.6800966-UTR-A-nodosum_M_contig1009:226640..226643Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1009 226641..226643 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866367.64734-CDS-A-nodosum_M_contig1009:225645..2258031680866367.64734-CDS-A-nodosum_M_contig1009:225645..225803Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1009 225646..225803 -
1680866367.6591814-CDS-A-nodosum_M_contig1009:226019..2261251680866367.6591814-CDS-A-nodosum_M_contig1009:226019..226125Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1009 226020..226125 -
1680866367.6692917-CDS-A-nodosum_M_contig1009:226583..2266401680866367.6692917-CDS-A-nodosum_M_contig1009:226583..226640Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1009 226584..226640 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1009.25.1

>prot_A-nodosum_M_contig1009.25.1 ID=prot_A-nodosum_M_contig1009.25.1|Name=mRNA_A-nodosum_M_contig1009.25.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=107bp
MEGYKIKNAHDATGGMTLKWTQEELPWRVAACGVLHYLRNVMAFHALSAV
HPVTYAIGSSMTWVAISTSMAVEFKPAVVPMTTLGSAIVITGTLLYFLAQ
AFFPNG*
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mRNA from alignment at A-nodosum_M_contig1009:222267..226643-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1009.25.1 ID=mRNA_A-nodosum_M_contig1009.25.1|Name=mRNA_A-nodosum_M_contig1009.25.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4377bp|location=Sequence derived from alignment at A-nodosum_M_contig1009:222267..226643- (Ascophyllum nodosum dioecious)
GCGATGGAAGGGTACAAGATTAAGAACGCGCACGACGCCACCGGCGGCAT
GACACTCAAGGTAGGTCTGTCGTCGTTCTTTTACGTACAGCTGTCGAGAG
GCTCTTCGGAAGTCCTTGTACGCGAGCGTGTCTCGAATCCGCAGTGGGCC
CTCTTCTCTTCTAGCCCCCCCTCGTGGTTTCGTTCGTGGTATTCGTGATA
TGATTTGGAGAATGTTAGTCCCATCTTTTTTGCTACCTTTTTGGTAACAC
AGGCACCATCATCAGTGGCCGTCAATGCTTTGACTTGGCGCCACGGAATA
CAGCGCAAGGTACTGTAGGTAGATCGAGGACACGCCGAGAGACGATACAG
TAAAACACGACACAACCGAGATTTCTCCAGCGGGTCTCTCGTCTCGTCTT
CGTCGGGACATTGGTGTCGCCGGTTTACACTCGGGACGTGAGATTTTCCA
TTGACCCCCCACTGATTGTTCTCATTTCCGCGTCGGTCTGTCTTTCACCC
CACCCCCTTTCCGTTTAGTGGACGCAGGAGGAGCTCCCTTGGAGAGTCGC
AGCATGCGGAGTGTTGCACTACCTGCGTAACGTCATGGCGTTCCACGCGC
TCAGCGCGGTGCACCCTGTCACCTGTAAGTCGAACCTTCCGCGCAAAAAC
GTCCTCCTTAGTTTGTCCTTAACCTCGGGTTTGTTTGCATAGACCTTGTG
TGTATGTGACGCTTCTGCTCGCGGGTCATAACACCTACGCACGGCTACAA
AACCGTACAAGCCGATTTCTCAAGCAGCATCCATCATAGAATGCACCGCG
TTCCCAACGCTCGTCTCAACCCTGCCCGACCACCCCGCAGACGCCATCGG
GAGCTCCATGACGTGGGTCGCAATAAGCACTTCCATGGCTGTGGAATTCA
AGCCGGCCGTCGTCCCCATGACCACGCTGGGCTCCGCGATTGTCATCACG
GGCACTCTGCTCTATTTCCTCGCGCAGGCCTTTTTCCCCAACGGCTAAGA
AAAAAGAAGCGGGTTGTCACAACACCATGTGCTATGATGTTGGCCAAGGA
CAGGGGCTTTTGAGCTCCGGCGGAAAAGGAGGTGTAGAGTGGGGACAAGA
CGCGTGGGACATCTCTGGTATGCAAACACGACGATCTCTGAAGCTCTCTC
AAGTTTTTGTCTACGACGCAGATTGCTCATCTTCTTGGGGAGCTATACAC
CGTCTTTTCATTTGTTGGCGGTCGCGATCGTGGGTCGACCTTGACGAGGG
TGAGGGTGATTTTTGATAGTTTGGGGAATGATGGATTCTCGTGATTCCTT
GGGATTATTGGGTAGTGTTGTGATCTGGTGGTGTACGGAGACGCTTTACT
TTGTTGTTGGTTTGATGCCGTGTATGTTGTGAGAGGAATAAGGAGTAGGA
TGCGAGTGAGTGTGGATGAAGGCGGTCTTTTCCAACCTCAGCACGGCGGG
ATCACCCGTGTGCTGTCGACGAGATGGAACTCGAGCGCGGTCGGCGCGGC
GACGAGAAGTCCTCGCGCGATGGATGATGGCCCCCCTCGCGTGCGTGGGT
TCCTGGGTGTGTGTTGTAGGCAATGGCCACACGATGTGACAAGAATGCGC
CTCCTGCGCGTTACGTGCAAAATAGCACGTGCTCTCTCGGCGCTGGAGGA
TGTCCGGCTGTATCAACGGGGGGCATTGGATGCCTGATCGCCCGGCTGAG
AAGAAAGGATAGCTTTACTGTACGTGTACTCGGAGATAAAAAAAACACAC
ACACACACACAATATTTCGGGGCAGGAATGACACTGCATACATTCAGTAG
CGAAAAAAGCTTGAGATATTTTTATTAGAACGAAGTTACAAGTATCCATT
GTATTCGTCGTGGAGATTGACAGCACAATGTAGAGTAATATATTTTGCAG
CATATTTTACATGGTACGACGTACCTGGTATTCGTAGAGGCCGCGTCTTT
TTCATGCCGCAAAAGATTGGGATTTCATAATAAGTTGCATCATTGATATA
GTGTTGCTGCAAAAACGCCTTTTTAGCTTTTTGACGGGCGGGGTTGGGAA
GACAACTTTCACACAAACCATGCGCAGCCGGGCGCGATCTTAGCGTGCAA
GTCATCTAGTGCTTAGGGCCGGCTCGTGCCATTGGAATACATTTCGTTCA
TTGTATATATAGTAAGGTAAGCACGACTGCTGAATGCTCCGTTGGAGAAG
GTTTGTTCACTTCATATCTGTAGTGCAGTGAATACAACAGATAGTGCTTC
GATTTTTTGCTATGATTTCTGTCTCGTCCATCCACTGGGGGTCTAAGGCA
AAAAGGAATGGTTTTGACAGTTCCGTGGGAATACCACAAAAATGATGTAA
AAAACCGTAGAAAAAAACGTAAAAACTGAGTTATTGAGCAGGGGGCCCAA
ATGTGGCTTATATTCCCGGCCGGAGTGGTACGACGCAAATTGATCATCTT
CTTGGGGAGCTATACACCGTGTTTTCATTTGTTGGCGGTCGCGATCGTGG
GTCGACCTTGATGAGGGTGATTTTTGATAGTTTGGGGAAGGATGGATTCT
CGTGATTCCTTGGGATTATTATTGGGTAGTGTTGTTTGTAATTCAAAGAC
TCTAGTGTAGAATAGGCGGAGCTTATGACTTATCTTTGCTAGAAGATAAC
GAGGCATCAGTGAAATACCACCCGGGGATCTGTTGGTTTACTAACTATTG
GACAGAGTGGTTGCTGGGTAGTTTGACTGGGGCGGTCGCCTCCTAAAAAG
TAACGGAGGCATATAATGGTAGTCTAGGCTCATTCCCCGAAAAGGGAAGT
TGAGCATAATCGTAAAAGCCCGCTTGACTGTAAGAAAGACATTTCGATCA
GAGACGAAAGTCGATCATAGTGATCCGGTGGTATACGGAGACGCTTTACT
TTGTTGTTGGTTTGATGCCGTGTATGTTGTGAGAGGAATAAGGAGTAAGA
TGGGAGTGAGTGTGGATGAAGGCGGTCTTTTCCAACCTCGGCACGGCGGG
ATCACCCGTGTACTGTCGACGACGTGGAACTCGAGCGCGGTCGGCGACGA
GAAGTCCTCGCGCGATGGATGATGGCCCCCCTCGCATGCGTGCGTTCCTG
GGTGTGTGTTGTAGGCAATGGCCACACGATGTGACAAGAATGCGCCTCCT
GCGCGTTACGTGCAAAATAGCACGTGCTCTCTCAGCGCTGGAGGATGTCC
GGCTGTATCAACGGGGGCCATTGGATGCCTGATCGCCCGGCTGAGAAGAA
AGGATAGCTTTACTGTATGTATACTCGGAGATAAAAAAACACATACACAA
TATTTCGGGGCAGGAATGACACTGCATAGAGTCAATAGCGAAAAAAGCTT
GAGATATTTATCAGAATGAAGTTACAAGTATTCGTCGTGGAGATTGACGG
TACAATGTAGAGCAATATATTTTGCAGCATATTTTACATGGTACGACGTA
CCTGGTATTCGTAGATGCCGCATCTTTTTTATGCCGCAAAATATTGATAT
TTAAGTTGCATCATTGATATAGCTCTAGGCAGCATGTTTGCTCTTACCTT
GAGTATGGAAATTTGCCCACGTGAAGGCGCGTTAGTCGCAGTCCTCGAGA
AAAAGTCAAGCGGTGGTCGGTTTTACCTTTATGAGTTCATTTGGAAATAT
CTTGATGGAATGATGCCCGTGGACATGAAACTTCTCAGGTTACTATAGTT
TCTACCGCAGCAGCAGGGCTCTACGCAACGGTACAATAAAAGCGACGGAA
TATTTTGAGTTGTTTCACCCGCCCGAGCGTTGCCAGATGCAGTGTGATCG
AGATTGACGTAATCTAGTGTTGCTGCAAAAACGCCTTTTTAGTTTTTTCA
CGGGCGGGGTTGGGAAGACAACTTTCACACAAACCATGCGCAGCCGGGCG
CGATCTTAGCGTGCAAGTCATCTAGTGCTTAGGGCCGGCTCGCGCCATTG
GAATACATTTCGTCCTTTGTATATATAGTAAGGTAAGCACGACTGCTGAA
TGCTCCGTTCGAGAAGGTTTGCTTACTTCATATCTGTAGTACTGTATACA
GTGAATACAACAGATGTACTTCGTTTTTTTGTTATGATTTCTGTCTCGTC
CATCCACTGGGGGTCTAAGACAAATAAGGATGACTGCGCTGTTCAAATAT
TTCTCGAAGCGTTAGCTGAAGTGGTTTTGTGTTTGGGTTATGTCTGCAAG
TGCGCGCGTGTGTGTATGGTTCTTTATAGTGTCTGCGTTTTCTCGTGTCT
TTTATGCGGGAAACGTGTTTGATATTTTGGCAAGTTGTCATTATATTGTA
ACCATAAAATACATACGTGACCTACCATTGATTCCTTTTTTTACCGCGCC
ATCCAAGTCTACTTCGTCATCGAATAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1009:222267..226643-

>mRNA_A-nodosum_M_contig1009.25.1 ID=mRNA_A-nodosum_M_contig1009.25.1|Name=mRNA_A-nodosum_M_contig1009.25.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=321bp|location=Sequence derived from alignment at A-nodosum_M_contig1009:222267..226643- (Ascophyllum nodosum dioecious)
ATGGAAGGGTACAAGATTAAGAACGCGCACGACGCCACCGGCGGCATGAC
ACTCAAGTGGACGCAGGAGGAGCTCCCTTGGAGAGTCGCAGCATGCGGAG
TGTTGCACTACCTGCGTAACGTCATGGCGTTCCACGCGCTCAGCGCGGTG
CACCCTGTCACCTACGCCATCGGGAGCTCCATGACGTGGGTCGCAATAAG
CACTTCCATGGCTGTGGAATTCAAGCCGGCCGTCGTCCCCATGACCACGC
TGGGCTCCGCGATTGTCATCACGGGCACTCTGCTCTATTTCCTCGCGCAG
GCCTTTTTCCCCAACGGCTAA
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