mRNA_A-nodosum_M_contig1181.24.3 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1181.24.3
Unique NamemRNA_A-nodosum_M_contig1181.24.3
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1181.24.3 vs. uniprot
Match: D7G5Y3_ECTSI (Heat shock protein 40 like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y3_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 1.220e-11
Identity = 36/72 (50.00%), Postives = 53/72 (73.61%), Query Frame = 2 
Query:   86 QALRLKPNYPEVLLRKARLLSRLGFWEEAVEDYDELLLNSDVPTWAWEQAASEMREARVNLQKLHEEQRRRE 301
            +ALRLKPNYP+VLLRKARL  RL  W+ A++DY+    +  V    WE+AASE+ + R++ ++ ++E+RRRE
Sbjct:  205 EALRLKPNYPKVLLRKARLHKRLSQWDLAIKDYETYRNSVGVLHSTWEEAASELDQCRLSQRRANDEERRRE 276
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1181.24.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5Y3_ECTSI1.220e-1150.00Heat shock protein 40 like protein n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1181contigA-nodosum_M_contig1181:202419..203018 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size304
Hectar predicted targeting categorysignal peptide
Exons2
Cds size273
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866597.1994722-UTR-A-nodosum_M_contig1181:202418..2024401680866597.1994722-UTR-A-nodosum_M_contig1181:202418..202440Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1181 202419..202440 -
1680866597.2302153-UTR-A-nodosum_M_contig1181:203009..2030181680866597.2302153-UTR-A-nodosum_M_contig1181:203009..203018Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1181 203010..203018 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866597.2130046-CDS-A-nodosum_M_contig1181:202440..2025441680866597.2130046-CDS-A-nodosum_M_contig1181:202440..202544Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1181 202441..202544 -
1680866597.221761-CDS-A-nodosum_M_contig1181:202840..2030091680866597.221761-CDS-A-nodosum_M_contig1181:202840..203009Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1181 202841..203009 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1181.24.3prot_A-nodosum_M_contig1181.24.3Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1181 202441..203009 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1181.24.3

>prot_A-nodosum_M_contig1181.24.3 ID=prot_A-nodosum_M_contig1181.24.3|Name=mRNA_A-nodosum_M_contig1181.24.3|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=91bp
MLYKRSQGRWKNVLSLLLLIWCVDRAGAPAQAQLSGGAPEEGPPSLATWL
LGGSRGGLRRTPPQFRRPHLGVGTGSLRDEGGPSEPAETP*
back to top

mRNA from alignment at A-nodosum_M_contig1181:202419..203018-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1181.24.3 ID=mRNA_A-nodosum_M_contig1181.24.3|Name=mRNA_A-nodosum_M_contig1181.24.3|organism=Ascophyllum nodosum dioecious|type=mRNA|length=600bp|location=Sequence derived from alignment at A-nodosum_M_contig1181:202419..203018- (Ascophyllum nodosum dioecious)
ACAGTATAAATGTTGTACAAGCGGTCTCAAGGACGATGGAAGAATGTTCT
CTCTTTGTTGTTGTTGATATGGTGTGTGGATCGCGCAGGCGCTCCGGCTC
AAGCCCAACTATCCGGAGGTGCTCCTGAGGAAGGCCCGCCTTCTCTCGCG
ACTTGGCTTCTGGGAGGAAGCCGTGGAGGTGACTGCAGCAATTCGACGAT
CGCATTTCAATTTTGGAGACAGTTTTTTCATTTTCCACAACATGTATTGT
TCCATACTGCTGTTGTAATACTCACAGTACGTTATAATCATTTGCCCAGA
ACAAAAAGTATTTTTGTGTCGCATGAATCCTGATAGTCGCCGGAAAATCA
AGGAAACCGCTCTTACGAATATAATACTGATACTTGTGAACAAACAAACA
AACCAACCAACCAACACACCTTCGATGCCTTGTGCCTTGTATCGATACGA
TACTCTCCCTCACCTCAACCTTAGGACTACGACGAACTCCTCCTCAATTC
CGACGTCCCCACCTGGGCGTGGGAACAGGCAGCCTCCGAGATGAGGGAGG
CCCGAGTGAACCTGCAGAAACTCCATGAGGAGCAGCGTCGCAGGGAGCAG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1181:202419..203018-

>mRNA_A-nodosum_M_contig1181.24.3 ID=mRNA_A-nodosum_M_contig1181.24.3|Name=mRNA_A-nodosum_M_contig1181.24.3|organism=Ascophyllum nodosum dioecious|type=CDS|length=273bp|location=Sequence derived from alignment at A-nodosum_M_contig1181:202419..203018- (Ascophyllum nodosum dioecious)
ATGTTGTACAAGCGGTCTCAAGGACGATGGAAGAATGTTCTCTCTTTGTT
GTTGTTGATATGGTGTGTGGATCGCGCAGGCGCTCCGGCTCAAGCCCAAC
TATCCGGAGGTGCTCCTGAGGAAGGCCCGCCTTCTCTCGCGACTTGGCTT
CTGGGAGGAAGCCGTGGAGGACTACGACGAACTCCTCCTCAATTCCGACG
TCCCCACCTGGGCGTGGGAACAGGCAGCCTCCGAGATGAGGGAGGCCCGA
GTGAACCTGCAGAAACTCCATGA
back to top