mRNA_A-nodosum_M_contig1177.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1177.2.1
Unique NamemRNA_A-nodosum_M_contig1177.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1177.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1177contigA-nodosum_M_contig1177:3539..4142 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size606
Hectar predicted targeting categoryother localisation
Exons1
Cds size585
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866590.1638136-CDS-A-nodosum_M_contig1177:3538..41231680866590.1638136-CDS-A-nodosum_M_contig1177:3538..4123Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1177 3539..4123 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866590.1801941-UTR-A-nodosum_M_contig1177:4123..41421680866590.1801941-UTR-A-nodosum_M_contig1177:4123..4142Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1177 4124..4142 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1177.2.1prot_A-nodosum_M_contig1177.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1177 3539..4123 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1177.2.1

>prot_A-nodosum_M_contig1177.2.1 ID=prot_A-nodosum_M_contig1177.2.1|Name=mRNA_A-nodosum_M_contig1177.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=195bp
MPASGNCTPGQFIDYDAFASSWNAGVELEEQQARKSLVVLQTHNLVNRKH
PHALKHHMNTSKMMINAKRTMEPFKDQVQHLRKNQRVDASPEWSPGSDRR
LRTGVLQGGEEITFPLAAEANRRPRPIPVLVSSASPGTGGGDGTESAFGR
VGRTTSGESGDGPRGPEGAVSSAGVALQASGGGTERDPIGGGAHG
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mRNA from alignment at A-nodosum_M_contig1177:3539..4142-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1177.2.1 ID=mRNA_A-nodosum_M_contig1177.2.1|Name=mRNA_A-nodosum_M_contig1177.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=604bp|location=Sequence derived from alignment at A-nodosum_M_contig1177:3539..4142- (Ascophyllum nodosum dioecious)
GCTCTCCTTCCTCACCACCATGCCCGCGTCGGGAAACTGCACTCCCGGCC
AGTTCATCGACTACGATGCGTTCGCGTCAAGTTGGAATGCTGGTGTTGAG
CTAGAGGAGCAGCAAGCGCGGAAGAGTCTCGTGGTTCTGCAGACCCACAA
CCTCGTCAATCGGAAGCACCCCCACGCCCTAAAACATCACATGAACACGT
CGAAGATGATGATCAACGCCAAGCGAACCATGGAGCCGTTCAAAGACCAA
GTGCAGCATCTGAGGAAAAACCAGCGCGTGGACGCATCACCCGAGTGGTC
TCCCGGCAGTGATCGACGCCTACGCACTGGTGTGTTGCAAGGTGGGGAAG
AAATTACTTTTCCATTGGCGGCTGAGGCGAACCGTCGGCCGCGGCCAATA
CCGGTGCTGGTTTCATCTGCATCACCTGGCACTGGGGGCGGCGACGGAAC
GGAGTCCGCTTTTGGCCGTGTGGGCAGGACGACAAGCGGTGAAAGCGGTG
ATGGGCCACGAGGGCCAGAGGGAGCGGTCTCTTCGGCAGGAGTTGCATTG
CAAGCGAGCGGGGGCGGAACGGAACGAGATCCCATCGGGGGTGGAGCACA
TGGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1177:3539..4142-

>mRNA_A-nodosum_M_contig1177.2.1 ID=mRNA_A-nodosum_M_contig1177.2.1|Name=mRNA_A-nodosum_M_contig1177.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=585bp|location=Sequence derived from alignment at A-nodosum_M_contig1177:3539..4142- (Ascophyllum nodosum dioecious)
ATGCCCGCGTCGGGAAACTGCACTCCCGGCCAGTTCATCGACTACGATGC
GTTCGCGTCAAGTTGGAATGCTGGTGTTGAGCTAGAGGAGCAGCAAGCGC
GGAAGAGTCTCGTGGTTCTGCAGACCCACAACCTCGTCAATCGGAAGCAC
CCCCACGCCCTAAAACATCACATGAACACGTCGAAGATGATGATCAACGC
CAAGCGAACCATGGAGCCGTTCAAAGACCAAGTGCAGCATCTGAGGAAAA
ACCAGCGCGTGGACGCATCACCCGAGTGGTCTCCCGGCAGTGATCGACGC
CTACGCACTGGTGTGTTGCAAGGTGGGGAAGAAATTACTTTTCCATTGGC
GGCTGAGGCGAACCGTCGGCCGCGGCCAATACCGGTGCTGGTTTCATCTG
CATCACCTGGCACTGGGGGCGGCGACGGAACGGAGTCCGCTTTTGGCCGT
GTGGGCAGGACGACAAGCGGTGAAAGCGGTGATGGGCCACGAGGGCCAGA
GGGAGCGGTCTCTTCGGCAGGAGTTGCATTGCAAGCGAGCGGGGGCGGAA
CGGAACGAGATCCCATCGGGGGTGGAGCACATGGG
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