mRNA_A-nodosum_M_contig10085.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10085.1.1
Unique NamemRNA_A-nodosum_M_contig10085.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10085.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10085contigA-nodosum_M_contig10085:6348..8555 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size159
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size156
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866365.205895-CDS-A-nodosum_M_contig10085:6349..64261680866365.205895-CDS-A-nodosum_M_contig10085:6349..6426Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10085 6350..6426 -
1680866365.217108-CDS-A-nodosum_M_contig10085:8476..85551680866365.217108-CDS-A-nodosum_M_contig10085:8476..8555Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10085 8477..8555 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10085.1.1prot_A-nodosum_M_contig10085.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10085 6350..8555 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10085.1.1

>prot_A-nodosum_M_contig10085.1.1 ID=prot_A-nodosum_M_contig10085.1.1|Name=mRNA_A-nodosum_M_contig10085.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=52bp
DKIHFIRQQHREEPGITHGGRLTSAHDRLTSSASSASSRFLSLARVGLYF
EA
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mRNA from alignment at A-nodosum_M_contig10085:6348..8555-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10085.1.1 ID=mRNA_A-nodosum_M_contig10085.1.1|Name=mRNA_A-nodosum_M_contig10085.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2208bp|location=Sequence derived from alignment at A-nodosum_M_contig10085:6348..8555- (Ascophyllum nodosum dioecious)
GACAAGATCCATTTTATACGACAGCAACACCGAGAAGAACCCGGCATCAC
CCATGGGGGACGTCTGACGAGCGCTCACGGTGAGCCTCTGGCCTATCGTG
AGGACCGTATGAATATCAGTAGTCAAACCCCTCGCCTAAGAGTTGAACTT
CGATGGAACGTACCTCGAAGGTGAGGTTCGGGTGGGGGTATGGTAGTGTA
TGACACCAGGCCATCTGATGATATTTGTGTGCCCGGTTTCTTGTTTAACC
CAGGACTCGGTGGGGGCAATGGTAGAGTATGGGACCAAGCCTTCTGATGA
GAAATGTTGTACGCGTGCTCGGCTTCTTGTCTAACCCAGCCTTTGGTTGT
TTTTTGTTTGATTTGAGTTATGTAAACTCATTAACCCCGCAATGCAAAGA
CAGGATACAGTTGTGTAGACCTAGGTAGCTTTGCTTGTTTGGGCTCCTAT
CATTCGCTTCTTAATGTAGACGTAAGTAGAAACGGCGGTGCCCCGTTTTC
TTTTCCCTATTTATTTAGATGGCGATGGTAAGGATTAAGTCTGTCCCCTT
TTACGTGCCGCTGCTCTTGAGGCATCGAGCTCCGGGGATTAGGGTAGACA
AAGAAAGGAACGATGGTTTCTTTTGTCCGGACTGTTCTATGCATGATGTT
CGTTGACACGTAAGATGAAAAGGTCGTACCGAAGGATGGGTGGTAGAGAA
CGCTTGGCCACGTACCCCTTCCTTCTTGTGCGACAAACCAGTGATCCGTT
TTCAGATAACAGTGATGGAAGTTTCTCCGCCGAGCGGTTTAGTAGACAAG
CCACATGAAACCGTATGCTATAGCCGTTGGTTGATTGAACCACACAAATG
TCCATTCGACATGCTACGCATCGATCATAGGTCGGCTGACTCGCATGAAA
TGTTAGTTCAATAGGCTCCGTTGAAATAATTTGTTAATCCGCGATATAGT
ATTTTGGGACTATAGTACGTTGAATCACTGCTTGGATCTTCCATAAGAGA
TGCGGGTAGAGAAGGCATTTTCCCCTGCGATGTGGAATAGATCTCCCCTT
TTTTTTTGAAGTTTTAATCCGTTGGGAAGAAATGATAACCATGACAACCG
GTAACTGTCAGGTATCAACAGTAACGTTTGCTGGAAGGGATGGCTGTTTG
ACAAGGAACAGTAATGTAAGAGAATTTAAGACCCATGCGAACGCTTGACC
TGTTGAGATTTAGCGGTTCGCCCCACCATAGAGGATGTTGATCTATCTGG
TGGGCCCCGAGTCTTCTAATGAAGTACACGGAAGGGAGGGCACGCCTTTC
TTGTAGTTAGAATCGACTACCACTCTTAGACACTCCTTTCCGGTGGGAAA
TGACGTAAATGGTGTCGCGGGCTGGTCCACCCCAGATGCTAACTGCAATT
AAGCAAGTTGTAGGGAGAGGTGCTACCTGTAGGGAGTAGGAAAATGTTAT
GACCCAAGCAAGCGCTTCACCTGTCGAGGTTGAGCATTTGTCACAATAGT
AGACGTTGGTCTACCTGGTACCCTAAAGGACTTAGGAAGGAACGGAGGGT
TTTTATCCAGTAGCTGGGTTTCCCTTGTTGTTGTTTTTTTTTGAGTGCCC
CTGATTTCTAACGCATCAGTAAGGATGTTTCGAACCCGGAGGGTGTTCGT
GCAAGGCAAGGTGATTAGTAAATCCTTACTTCAACACTACACCCGCGTTT
GGGATGCATCGCGCTAGGCGCATCCGTGTACGGCGGTTGCTCAATATAGT
ATAATTACACCCATAGTCTAATGGTGTAAACTCGTGCATCATCGGATTGT
GTAAGCGCATTCAAACTGTTCTGGTACGTAGGAACAACTGTAGCCAAATG
TCCGAGTACTATGCGTAGGTTGATATAGGATAAACTCGGACTATTTATGG
TAGCAAACCACGAAATCCGACTTATGTCGCACGACGGCACGTTCGAGATT
GATCTGAATTGACCTGTAACGGTTTTAGGTGAACGGCTCTTTTTTGGCCG
GAGGACTTGTGTTAACCCTTGATCGATTGACCCCACTCGATCACTCTCTT
TTCGTGTTTTCTTCTTGCTTTACGCTGTTAATTAATAAAAGGTTATTCTT
CCATCTATCTACTACCCTCTACCCGACAGACAGACTGACGAGCTCAGCCT
CATCGGCTAGTTCCCGATTTCTCAGCCTTGCACGAGTCGGCCTCTACTTT
GAGGCTTC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10085:6348..8555-

>mRNA_A-nodosum_M_contig10085.1.1 ID=mRNA_A-nodosum_M_contig10085.1.1|Name=mRNA_A-nodosum_M_contig10085.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=156bp|location=Sequence derived from alignment at A-nodosum_M_contig10085:6348..8555- (Ascophyllum nodosum dioecious)
GACAAGATCCATTTTATACGACAGCAACACCGAGAAGAACCCGGCATCAC
CCATGGGGGACGTCTGACGAGCGCTCACGACAGACTGACGAGCTCAGCCT
CATCGGCTAGTTCCCGATTTCTCAGCCTTGCACGAGTCGGCCTCTACTTT
GAGGCT
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