mRNA_A-nodosum_M_contig1174.14.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1174.14.1
Unique NamemRNA_A-nodosum_M_contig1174.14.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1174.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1174contigA-nodosum_M_contig1174:177687..180216 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size342
Hectar predicted targeting categoryother localisation
Exons2
Cds size228
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866582.0973763-UTR-A-nodosum_M_contig1174:177686..1778001680866582.0973763-UTR-A-nodosum_M_contig1174:177686..177800Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1174 177687..177800 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866582.1103725-CDS-A-nodosum_M_contig1174:177800..1778921680866582.1103725-CDS-A-nodosum_M_contig1174:177800..177892Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1174 177801..177892 -
1680866582.1209962-CDS-A-nodosum_M_contig1174:180080..1802161680866582.1209962-CDS-A-nodosum_M_contig1174:180080..180216Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1174 180081..180216 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1174.14.1prot_A-nodosum_M_contig1174.14.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1174 177801..180216 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1174.14.1

>prot_A-nodosum_M_contig1174.14.1 ID=prot_A-nodosum_M_contig1174.14.1|Name=mRNA_A-nodosum_M_contig1174.14.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=76bp
GACPTTPAHIFFLRKKIPASHRARVGTSTVNLALGANLEGKERVKALKSK
NNDRPHIQLGFLLRPGGLQLRPRCL*
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mRNA from alignment at A-nodosum_M_contig1174:177687..180216-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1174.14.1 ID=mRNA_A-nodosum_M_contig1174.14.1|Name=mRNA_A-nodosum_M_contig1174.14.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2530bp|location=Sequence derived from alignment at A-nodosum_M_contig1174:177687..180216- (Ascophyllum nodosum dioecious)
GGTGCATGCCCGACTACACCCGCACATATTTTCTTTCTACGTAAGAAAAT
CCCCGCCAGCCATAGGGCCCGGGTTGGAACGTCAACCGTAAATCTTGCAC
TGGGCGCTAATCTTGAAGGTAAGGAGAGAGTCAAGGGTAAAGCTAGTCGG
GTACAAAGTACCCGAATCGGGTCTGCGCTCGTGTGTGTACGCCGGAACGT
TACTGTCGTCATGGTTGCTGTACCCACCGGTTGCGTAGTAAGGGTCGTTT
TGAACGACCCAAAGTTTTTTTGAAAATTTCAAAACTTTGAAAACTTAGTA
ATTCGTGAGGAGGCGTTCTTCCAAACTACTTCAAAAACTCTGGAAGCTAC
CGAGGGCCGTGAGATTTGGAGCCGTTAATTTCAAAGTTTTTTGACGATTT
CAAAATCTGGTAGCACCGGAAAACAAGGGCGTCGTACGCCGTACCACAAG
TCGCACTCAACAGCAGAGGTAGCCTGGATGTTGGCTGGGACATGACAGAC
CACAGAAAACGCGGTGCGCCCTCTGGTTCGGTGAATTTTGTGTTTGTTTC
CTGTGATACAGCAGTACACCTTGAGCGCCATGAAAATATACGTAACATTT
TTTGTGGTACATCAGTTTGTTGTTGCTGTTGTTGTTTCTCACATTCAGCG
TATTGGTTGCCAACCCGAAAAAAACGGCGAATATTAATTGGTCCATGGTG
ATCTGCCAAGGCAGCACCGTTTGGAACTACCTTGAGGTTTACTGGCCCTG
TGCCGGCGGACTCTCGGTGTGAACGCCATCGGTACGCAAATTGCGTGACC
CGATAAACTCGGGACTGACCCGATGGCGTATGGCGTTTTCATAAATGGAC
GCCGCCGCGGAACTCGGGAGGAATCCCGTAAGTAAGCACCAGATTCAGCC
TGAGTATGGAGATGAGCAGGCTGACGCGGGACGGGACGGCTGAACCCATC
TCGCGAGACCAAATTCTCAGGCACGCACGGGGACAGGGGAATATTATTTT
CCCTGTTGAGCTGACCACGAGCAGGATTGGCAACCTTACCAGGTTGATCC
ATACTCTGCTATATGTGACGACCATACATACATACATTTACACGGTGGCC
AATCCCGCTCCTCGTGGTCTGCTGAACAGGGAAAAGAGAACATAGATCAC
ATTTCCTGTAGCTACTGCAGTGTGTGTACAACAAACTGGAGTACTGTACC
CTGAAATTTCCTGTGGTACAAACGTTCATATGTACTACACTAGACTATAC
CGGTAGCTCACAGTGTAATTGTGGTATTTCGATGACACTTTTTGTCATAT
ACTAATATTACTATGGTACGGTCGCCCCGGTAGGTCAGAGGTGCCTCGTA
ACCCTTTGACACGTTAGGACGTGAGTTCGACTCCGGCAAACGGGATTTTT
CTCACTTGTTGTTGTCTTCACATTAAAAGCCGTCCCGGTCTCTACTCAGT
ACTTTCTAACATCCGTACTGGTCCAACTGACGCGAACGCCTTCCGTGGTC
ACAGGCTAACTGCCCAAGAAGGGTATACATATCAGAAAGAAATAAAAGGA
CCCAGAAAAGTCAACACACACGCGATAATTGGAAAATAAAATAAAACCCC
CCAGAAAAGTAAGGCTCCAGACAGTCAGACGTCGCAGGCGACATGTCAGA
CAAAGGGATGGATAGAGCCCATCGCTCCCTCGACACGCGAGGCCAAGCGA
AATGAAACAAACAAGAAGAATCAAGGATCACCAATCAAGACAATAAAATC
GCATGATTCTATCCTTGTACCCATAAGCCGGTCGACCCCGGTAGCTCAGT
CGGCACCTCGTAACCTTCCTAGTCGCCATGACCACCACACGCGCCTCAGC
CAAAGGAAAGGGGACGCCAGCGGCAACTTCCGCCCCCTCCCCCGCGGCCA
ACACCGGCTCCCCTCAAACTTCGACGTACGTCGACTCCACCGCGACGTCT
CCGATGGCTACACTGGCCATCCGGGCAGCCTCGGGACCGGGAGCCGGACG
CTCTCGGGGACAGGGCCCGCCCTCCCCATCGCCTCCGCCCGTCTCTGCCC
CCCACATGCAGCACTTGGCCTCTGTGGGCCGGACATGTCCATGGAAATGA
AACAAAAAATTCCAAGATACCGCACACTATGGTCGAGGCCGGACTCCGCG
AGGCGGAGATGGTTGCTACACGCAACGCGGCGACGATCGCCACCACGGAA
CACCACCACCGACGCCAGGGGTTAGTGCAGGTTGAACACGGCCTGGACGC
ATCTATCGCGGAGCTAGAGGCATCTGGGACGGAGCTGGAGGCCGCCGGGG
CGAAGAAGAAAGCCGAGGCTCAAGCGCTGAAATCCAAGAACAACGACCGC
CCTCACATCCAACTCGGCTTTCTTCTTCGCCCCGGCGGCCTCCAGCTCCG
TCCCAGATGCCTCTAGCTCCGCGATAGATGCGTCCAGGCCGTGTTCAACC
TGCACTAACCCCTGGCGTCGGTGGTGGTGTTCCGTGGTGGCGATCGTCGC
CGCGTTGCGTGTAGCAACCATCTCCGCCTC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1174:177687..180216-

>mRNA_A-nodosum_M_contig1174.14.1 ID=mRNA_A-nodosum_M_contig1174.14.1|Name=mRNA_A-nodosum_M_contig1174.14.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=228bp|location=Sequence derived from alignment at A-nodosum_M_contig1174:177687..180216- (Ascophyllum nodosum dioecious)
GGTGCATGCCCGACTACACCCGCACATATTTTCTTTCTACGTAAGAAAAT
CCCCGCCAGCCATAGGGCCCGGGTTGGAACGTCAACCGTAAATCTTGCAC
TGGGCGCTAATCTTGAAGGTAAGGAGAGAGTCAAGGCGCTGAAATCCAAG
AACAACGACCGCCCTCACATCCAACTCGGCTTTCTTCTTCGCCCCGGCGG
CCTCCAGCTCCGTCCCAGATGCCTCTAG
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