prot_A-nodosum_M_contig117.50.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig117.50.1
Unique Nameprot_A-nodosum_M_contig117.50.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length1031
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig117.50.1 vs. uniprot
Match: A0A6H5JGI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGI3_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 2.660e-12
Identity = 56/136 (41.18%), Postives = 68/136 (50.00%), Query Frame = 0 
Query:  273 ELFAEAVLEEFTVDAGVDNEGSEDYEGEGLSKAVPRDAPYV------------------KGNALRRPMWEALLFSKGVFHHAARSGTKYS--SWTGIGDPVPCPPGICLVDQAKELQARRLYEIG---QALGRKRS 385
            + FAEAVLEEFTVD           +GEG ++A                          +    RR  WEA  FSKGVF  A+         + TG G PVP PPGICLVDQAKELQARR YE+    +AL +++S
Sbjct: 1308 DFFAEAVLEEFTVD-----------DGEGAAEAXXXXXXXXXXXXXXXXXXXXXXXXLPRRKDKRRSSWEAFTFSKGVFQLASPGSVNLGGGALTGSGVPVPPPPGICLVDQAKELQARRKYEVSLSEKALAKEKS 1432
[Close]
BLAST of mRNA_A-nodosum_M_contig117.50.1 vs. uniprot
Match: D8LJC8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJC8_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 8.550e-11
Identity = 61/137 (44.53%), Postives = 73/137 (53.28%), Query Frame = 0 
Query:  273 ELFAEAVLEEFTVDAGVDNEGSEDYEG------------EGLSKAV-PRDAPYVKGNALRRPMWEALLFSKGVFHHA--ARSGTKYS------SWTGIGDPVPCPPGICLVDQAKELQARRLYEIG---QALGRKRS 385
            + FAEAVLEEFTVD   D EG+                    ++AV P   P+ K    RR   EA  FSKGVF  A  A + T  S      + TG G  VP PPGICLVDQAKELQARR YE+    +AL +++S
Sbjct:  975 DFFAEAVLEEFTVD---DGEGAXXXXXXXXXXXXXXXXXSAKTRAVTPEPLPWRKNK--RRSSLEAFTFSKGVFQLASPANASTAGSVNLGSGALTGTGVAVPPPPGICLVDQAKELQARRKYEVSLSEKALAKEKS 1106
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig117.50.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JGI3_9PHAE2.660e-1241.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJC8_ECTSI8.550e-1144.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 583..623
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..42
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 838..926
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..85
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 187..270
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 407..556
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 536..554
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 898..926
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 217..237
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 202..216
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 511..527

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig117contigA-nodosum_M_contig117:725971..743098 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig117.50.1mRNA_A-nodosum_M_contig117.50.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig117 725971..743098 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig117.50.1 ID=prot_A-nodosum_M_contig117.50.1|Name=mRNA_A-nodosum_M_contig117.50.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=1031bp
SWSGRGRGEGTGRRKVSIAPVLLSPPASSVGGMSSGSGSGSGFPGPSPAA
ARCSSATDASTSGGGGQPGAIGDEAPPAARGDADEVDLEVDDAVSVIGQA
VLDHLMLTRSCGEVEVCRGREEPTPTWATTHGDGDSFSGDVYSAGDGGRC
GVGGGFFPPSAESEGRAVEGAVDEGFLTARGEKSFFALDGDSASGNHGQQ
QQERSHEYEHQQHQQKDVLQQEAGETEQASTSANFSVVEGDACDEGDDRR
CTESGLGSVEEGASPLRPEDEDELFAEAVLEEFTVDAGVDNEGSEDYEGE
GLSKAVPRDAPYVKGNALRRPMWEALLFSKGVFHHAARSGTKYSSWTGIG
DPVPCPPGICLVDQAKELQARRLYEIGQALGRKRSATLSHISDHINGQAD
EVKTLSPIASNAVGVPSSNSKLKTKREADHDQQGSPGQSTAEMPRVGAGG
NDHAAGSGHGGTLHEKNGNPAYHYSPALAVGVDSPARQTASDAPTQGERE
GGYRSDRSAMEPGVASSSLTNASGVISSDPRKEVPPAPAVSKRENPRHRD
GCSHCHQGGSAAASVSLEAFGLRWKPSAAASGTRCVHATHPGRSSSPPQL
PPRPTAAAIGAVGPDASGGPSSTAVKLGTTSAAAAAAAVEAEEKAHVGRR
KGGAEASEKFTDVEAAGAKSIRARTEFAAVSPSASPSAFAKMEHAWRGDA
LVSSPPPITNNASSLRLAAAAKAAAARLTSTGTTTAGTSIRMRLPSAVLD
GRTSPPPAIGRPRGTVDDPCEVVVADAVRVISRADVVLAPAVASSASEGV
GGGVRGAAQEASSSSPLLAAGAAAAAAAKLETAAAEVGRESKEVESPPFQ
PAFTMPRRPLETTTAGLARKALAANLRKDQSTRQGRQADASAAAEEGDDA
PTTSSQEMAPVLSQERSDMLNSSVSSVSDAGESFHSALSRIGSSSSVSPP
AAPTAAAATAGISNIGGIDADLFIGQIGCSRSAYRPRGVSYGEKPWRAPD
AKGAGAARASATSSFGGGFGEAGVFVYGEGE
back to top