mRNA_A-nodosum_M_contig1168.15.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1168.15.1
Unique NamemRNA_A-nodosum_M_contig1168.15.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1168.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1168contigA-nodosum_M_contig1168:184581..192526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size333
Hectar predicted targeting categoryother localisation
Exons4
Cds size330
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866575.2990842-CDS-A-nodosum_M_contig1168:184580..1846191680866575.2990842-CDS-A-nodosum_M_contig1168:184580..184619Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1168 184581..184619 +
1680866575.3077903-CDS-A-nodosum_M_contig1168:191207..1912701680866575.3077903-CDS-A-nodosum_M_contig1168:191207..191270Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1168 191208..191270 +
1680866575.315965-CDS-A-nodosum_M_contig1168:191955..1921241680866575.315965-CDS-A-nodosum_M_contig1168:191955..192124Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1168 191956..192124 +
1680866575.331218-CDS-A-nodosum_M_contig1168:192465..1925241680866575.331218-CDS-A-nodosum_M_contig1168:192465..192524Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1168 192466..192524 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1168.15.1prot_A-nodosum_M_contig1168.15.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1168 184581..192524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1168.15.1

>prot_A-nodosum_M_contig1168.15.1 ID=prot_A-nodosum_M_contig1168.15.1|Name=mRNA_A-nodosum_M_contig1168.15.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=110bp
VGDFGAAQRGEETEGGNVVYRTDVYTLDHTSPRMASALHGEITADGAPRR
ALPLGRQLCFYNDLFGWARIAFPALADRPPPDMLFGPTEADYARVPDLGY
GDVLDAVRHL
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mRNA from alignment at A-nodosum_M_contig1168:184581..192526+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1168.15.1 ID=mRNA_A-nodosum_M_contig1168.15.1|Name=mRNA_A-nodosum_M_contig1168.15.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=7946bp|location=Sequence derived from alignment at A-nodosum_M_contig1168:184581..192526+ (Ascophyllum nodosum dioecious)
GTGGGGGACTTTGGCGCTGCTCAGCGAGGCGAGGAGACGGTGAGACGCCA
TGGGTAGCGAGTTGTGGCCGTGAAGCCTCTTTCACCGCCCGTGCTTGCTT
CAGGCTCACAAACCTTTCTAGACATGTTCTCTTGGTTCTATTTCGGTTTG
CTCAAGTTGCTGAATAAATAAAGAACGACGCATCACCTGAGAGTTTTGAC
GCCGTTTTTTTTGTGTAGCACGAACGAGTGTATAGCAAAAGTACGGGCGG
AGATCCCCCATTCTGACGACACTTCAAAAAGGGGAGTCGAGCATGCCTCT
TAGAACGTCACTGCGTCAAAGCTGGCTAAGACGCAAAAGCACACCATGCA
GGTGGCAGGGCTATTCCCGCTTGTAGACGGTGCGCGCGGTTGTGGTGTCG
AGTTTCGTCGTTAGCGTGACACGAACTTGCCGTGCACCCTTTCTTTTACG
AATATGGCGATCGACTCAAGCGCTTTCGTGGTGTAATCCGTGGTTTTATC
GACCTTTTTGTCACTAGTAAAGCGTACTAAGGCCGACTCTTATGGGAACG
AAAAACTTGTACGAAAATGGACCAAATCCGTTTTTGTTTTTTTTTCAATC
TTTTGGGAACGAGAATGGTCCAGATTCGTATAGCTAAATCCGTTTGAGCG
TTTCGTAACAAGACTACAAACGGATTTGGTACCCAGATTCGTTTGCACCA
GCGATACAAAACTGCAAACGAATTCTGCACGCGGCGCAACTATTACTACA
TTTGGCCAATAACAGAAACTTTTTCCCCCCTGACTGGGGGATGCTCAGAA
GGTCTAGGCGCGGTCTAGTTTTTCTTTGAACACTGCTAGAACTCAAATAA
ATAATTACCTCTGACAGGAATGCGGCGGCTATCGCCAAGGGTATGGTCGA
ATTGAGATCCATATTTTTTTACTCAAGAGAAGAGAGAGGACGCTGGCGGC
AAGGTCCGAGGTGCTTGAGATGCTTGAGGATGAGGGATGGTTTGGGAGGC
TTGATGATGACTCCCCGAAGGTCAAGTGGATGCGGCGCGTGTATCCCCTA
GTTGACTGCACGCAGGCACCGTGGACGGTTGTAATCCTTCGGCAGCCAAG
CTAAATCATCCACACTTCAAGGGAGGCATAGACGTTTCACCGGCGGTTCC
GCATTCCATATGTCTTTTCGTGGGCTCCTCTCCTTGTTGGCGACCCAGCA
GAAGTGGTATCACCATCTGCAACAAGTAGTGTGTTGTGTTTTCTTCCCAT
TCATTCTGGACATCAAGTTCGTTGGACGTACCAGCCGGGGTCACACAGGA
GGAAGGTCACACAGGATTTCTCATCCACCTTCTTTCTGCGGTGCGTGCCT
TAATTTTTCTCGCGAGAAGGATTCAGCCATTCCTTTCCCTCGTCGACCGT
GAAGTCGAATTTTGTGTACTAACGATTTAATCGTTCTCCACCCGTTGGGC
ATTTTTATTTTCAtTTTTTTAGTTTTTTAGTGAGAAAAATCCCGTTTGCC
GGGATCGAACTCACGTCCCAACGTGTCAGAGGGTGACGATGTACCTCTGA
GCTACCGGGGCGACCGGCTAGTACAGAGTTTGATTCCACACAACTACAGA
TAATATTGGTGTACCCAGCGAACTGCATGTAGCACAATCACACACCCGTA
CTATAACTGAATTGTTTACATACGAAGTACTACTGTACAGCAAGCACAAT
CACACACCCGTACTATAACTGAATTGTTTACATACGAAGTACTACTGTAC
AGCAGTCTGTATTTGTTTGAGTATTGTTGTTTTATCTAAATTCTGGGACA
GTACATCGCGATATCGTTCACCGAAACAGGAAGCGCGCGCTCCTGTCACA
GTCAACGGTTCGAGAAGAGTCTGTTGAGAAAAGTGCCAGGTAATTGCTAA
AATAGGTTGTCTACTTATTCCACTCCAAGTGCACCCCACAATACAGCAAA
CCGGGTGGTTTGTACAAGTGTCTTCTGGTGTAGCCTTCTGTCGTCGGATG
ATATGTACCGGCAGCAGATTTTCCCTCATCTGCGGCGGATAACGACGCGA
CCAGCTGTTCTAGACTACAGTAACTTTGACAGTTGCTGTTGAACTCCGCA
AAGCGCTTGGTACAACATGACCCCCGTGTAACGATACGACACGCTGCGTG
CATTCGTTGTAATGAAATTATGTCCCGATGCATCTGTTCGCCCGAGTATG
AAACAATTACCGGTATCGCCAGGGCAACGTACTGTATTCGAGTACATCAG
TACAGAAGTGTGGGTACGTAGACTGAATCGAAGACGTCTTAGTGAAAACC
GTACCAGCAGACGAACCTGCTGTAATTCCGGGGAGCCCCGACAAGTATCG
AAGCCGCACACATCAACACAATTTTCTTCGACCGTTGATGTAATGGAACG
GCCCTCGTCGCCCGAGTGGTCTAGTTGGTAACCTGCACCGCACACCTGCT
TGTGCGGAAGTCGTGAGTTCGATTTTTACCAAAGTAGGATTTGTGTTCTT
TCTTTCGTAACGGAAAGCGTGGGAACGTGAGTAAGTAAAATTCAACCATT
GGTGGACGAGTTGTAAGAGTGCTGAACTTGCATCGCGATAAAAAATTGTA
AGGCGTGAACCGGGGAGAGATGGGAAGATCCCTAGTGACCACAGGCAGGA
TGGTAATGATGAGGTCCATCGGCTATAAGTGAGATTTAAGAAAAAGAAAG
AAAGTGGAGCGAGTTTAAAGCCGTGGAATTCTGGCAGCCAGCAAACAACA
TCGGTTGTTGTTGTATTCTTCACATTGACCGATCGGGCCTCAACCATGTG
TGTGTGTGTGTGTGTGTGTGTATTTATTAAATTGCACATAACCACGCAAT
CCGGCCCTGTCATCCTAGTCATTCTATGCCACTCGCATTGATCCGTGTGT
GTGTTTTCTTCCCATTCATTCTGGACTTCAATGGACGTACCAGCCGGGGT
CACACAGGAAGAAGGTAACACAGGATTTTCCATCCACCTTCTTTCTGCGG
TGCTTGCCTTAATTTTTCTCGCGAGAAGGATTCAGCCATTCCTTTCCCTC
GTCGACCGTGAAGTCGAATTTTGTGTACTAACGATTTAATCGTTCTCCAC
CCGTTGGGCATTTTTATTTTCATTTTTTAGTTTTTCAGTGAGAAAAATCC
CGTTTGCCGGGATCGAACTCACGTCCCAACGTGTCAGAGGTTACATGGCA
CCTCTGAGCTACCGGGGCGACCGTACCCAGTAATATACGTGGTTGCCAAT
CCGGTACGTGGTCACAAAGAAATACCAAGGTCAACGGGTCACATCATGGT
GACAACCCGCTAACTCAGACCAACAGGGATCCAAGTTAAGCGACTCTACA
AGCGATGGCACCGACTAATAAAAAAGAGTTCATCAAACCTCCTTTACTCC
ATATCGAGAGCAGCCTCGATCGACTCGGATGGTTGTCGCCTACTCACGAC
CAGCGTTCTCAGCAACAAATCGGACAAATACGTTCCAACCAGTTTTGATC
AACAATTCCGTACAAGTTTCTCAAGGCCACACATCGTACAAAAATAAGAA
AAATTGAAATACCGAGGTCCATGGTGATGGAGGCCTTGAGCTGGTGAAGC
CGGCGCGCGAGCCAGCATCCAGCCGCCCAAAGCCCTGTGTGTCCTTGAAA
AAGCCCCACGAATCTTGCCCGTTCGCCGCTCCATGTGGCCCTCGTAGGAA
GAAAAATGACCGTGGTCAGAGATCAGCTTTTCCCTCAGAAACCTTCCGGT
TCGCGCTTTCGATTCTCGCGCACAGGGGTTCAGCCCTCTCCTGGCTCGTC
AACGATCGAGCTGCCCTCCGCCTTCGCCGAATCTGGTGCGTACCCACCTG
GTAGAGAACTACCGGGCTCTCCGCGACAGTGCTCCCTGCCTCTCGCGTGC
CGCCACCCTCCCGAAGGCCACCAAATTGGAGCTCGGAAGAGGCGCACACC
TGAAAACACCATCCTCAGCCAACCATACTGCCGCCGCGTCTCAACCGACA
GGCCGAATCGCGAAGGCAGCCAGTTGGCTGCATCTCTCAAGGGTGAGCCC
GGCCCTATACCCGCCGGAAAGACCCTCCCACACTCATACCCCGAAACCAG
GTTTCGGAGGGAGAGGGCACGAGATATGTGCGGTGTCTGTAGTTCCGGGC
GTAGTGTACAAACTTAGAGTAGCGCATTCTTGCCGGTTTGTGCTTGTGTT
CATCCTCCGACAATGCGTGATTAAGAGTAAATCCTCGACATGAGTTGGTG
TCTACGCTTTACTGGTAAAGTAGTACAACTGTAGAGCTCCAGCTCGTCTG
CTCTTGCATATCTCACCCTCTTGTTTAAAAAAATTGGTGGTCATTTCCAT
TCGGTAATTTCATTGTTGTAGGCCCCAAATAAGCAAAATGGATTTGGGCC
ATTTCCGTTTAAGTTTTTCGTTCCCATAAGAGTTGGCCTAATGGGGCAAA
TCAACGTAACAAAAAAGGATAGAAGCCCCTTTTCCCTGTAGGAATACTAG
TATATTTGTATTTATTTTCCCTTTTTTTCTTCTTCCGGTTCGTGGGGGCT
CTGTTATCAGCGAGGGCGCATAAAAACCGACACCTGCTCTCCTGATTGGC
CAGGAACGATCCAAAATAATGACAACACCTCTGCCACCCCTCCGGAGTTG
GCGCCTACAGGAAAAACAGATTGATCGGTATAATACGAAAGCCGTGAATA
CGGGCGTTTTGCCTCCAAATGCCTGTTTGATATCTACAATTTGGGATGAA
GGGAATCTGCTGAAATATACGGCAAGTCGTTCAAACAACAGAGATAACAG
TCAAGCATCTTTATGCCCAGGCAGTTTTGGGGTTCGAAGGTCATGTACCT
TGGTTCGGGGCGGCCGGAGCAAGGGTTGCGCAAACTCGGCAATCCTGCCG
CAAAAGGCCCCAAAAGGGCCCCTGCATACATGTAGTCAACTTTGTTAGTC
GACACTACATGTAGAAGGTTGTGCTCTTCGGGGGGCTTTGGGAGGTCTGC
TTCAAAACCCCGCGGTCTCGGGGGCGATCCTAGGCTCAAGAGCGGAGGAT
ACCTGCTCGAGCTCCTACTGCTGCAGACGCTGCACCACGCACACCGCCGA
ATCACTCACACGAGAAAAAATATGTGCACAAGAGAAATCTCGAATTCCCC
TTGAACGGGATCGGCGTTGTTTACCATGGGTTATGCATATATGCACACGT
GCCTGATATTTCAGCCTCCTGTACCGAGCCGGCCCGAAAACCATGGGGTG
CAGGAGGTGCTCTTAGGGTTTTGACGTCGACTCCAAAGGATATTACAAGA
AACGTTCCTGGGCTCGAAAACACAGTCTTGGGCACTGTGCCGCATGATCT
ACAACAACCGCCTTAGGCCGATAGCCCTGAGCAAAGGATCGTGTACATAT
CTTGTGGAACTGCCAGGGCGCCGTGGTTGCTCCGTTATCCGAGGCTCCCC
AAGAGGGCTCTCCACGTTTCTTCCTGTTTTCTCTAATAAACCTCCATTTG
GCCTCTCACCATATGTTCTTACAGAGGAGACTGGTTTAATATTCCCCTTT
ATCTAGAGGGGATAGCCCCGCTGTGTTCAGTGTCGTATAGTACGTATAAA
GAGTATGTATACGGTATAAGCCTGTGTGTACGGAAGGTTTGTGTGCTACA
AGCTGGTACGCGATATAACATCAACGTTTCGATAATCGCACCATCTTTGT
TTGGGATCATCTTGTTAAGCTCATTCCTCCTGAAACAACCCCACCCACAG
CACAACCCCTCCGCGTAAGACCTGTCAACGCTGCAGACTCCCGTGGGATC
TCCAATCACACTTAGCGGTAGAGAGCGCGCCCGCTTAGCGATCATGCTGA
GCGTAAAAGAGCAACGCTCACTTCGCGAGGTACCACGAAACGTTTGCATG
CTAGGGCTGCGATAAGGAGGCTGTTGTATTGTGAGTCGGAAAATTGGGGA
ACATACCTAGATGGCTGAGTAGCTCAGGGTACCGCTTTGGAAGCAGACGA
TAAAAAAATCGTGAGTTTAAATCCGACCGCGAGCATTGTTTGTCAAGGGA
GCACGTCAGTGGCGAGGGGAATGCCCCGGGTATCACTGTCGCTACCCGGA
AAGGCCAGAGAGCCTAAGACATATCTTTTGTTAGTTGGCGGTGAAACCAT
TGGACTACTCAGTCACGCGAGCACTGTTTGTCAAGGGAGCACGTCAGTAG
CGAGGGGAGTGCCCCGGAGATCACTGTCGCTACCGGGGAAGGCCAGAGAG
CCTGAGACATATATTTTGTTGGTTGTCGGCTAAACCAATGGACTACTCGG
TCACGCGAGCACGTTTGTCAAGGGAGCACGTCAGTGGCAAGGGAGTGCCC
CGGAGATCACTGTCGCTACCGGGGAAGGCCAGAGAGCCTGAGGCATATAT
TTTGTTAGTTGTCGGCTAAACCACTGGAGGACTACTCGGTCACGTGGCTC
AGTAGTTCAATGATTTAACCGCCAACGAACACTCTGACCCCACATGATAC
TCCGGGATGGGATTTTTTTTTAATAATGTGCGAGAGGTACAAGTACGGTC
GCTCTCCCATGAAACCGACCGTAAAAGGGAGAGCTACTAATATTCTCGCC
TCGCATCTCTCTGATGCTCTGCCAAAGGAGGGAGGAAACGTCGTCTACCG
CACCGACGTCTACACCCTGGATCACACGAGCCCGCGCATGGTGAGGATTG
CTGCAAAGAAGCGACGTGGCAATATAAGGGAGCCCGTTATAAAACAGAAC
AAGTAGCGGGGATTAATCTACCGATCGATCAATGCTTCTTGAGAGTGCGG
TTTCAGCTTGTCGGACGATGGTTGCACGTGCCGCTGTCTCTTTAAATTTA
TTTATGAAAGCTGCAATACCGCCCCCCTAACGAAGAGATACAGCATGCAT
GATGCATTATTTTACCGCATGGTACGCCTCGCTAATCCAACAACCAATGC
GGGCCGGCGCTGCGTAGTTTCTGACTCATGGGGCTTACTACACCGCACAC
ATACTTGATTCCACTGCAAGAGGAGTAGTTGTTTCTAACATAAAACGTGC
AGCACATTGTGTTGGATGGCGACTCGAGCTTTGAAGCAGCTGATGTGCAG
TCAGAAGCGCTCGCCCAATTATTGGCACTTGAAGGAAGGTGGTTTTGAGG
GATGAGGTCTCCGCACCCGTTTTGAATGTCGTAATACAAAAGTATGTCTA
GCCACAAAGTAAGCGCGTCGGAGCTTGAACAAACTTTTTGTCTTGCGTCC
ACGGTTTCAAGTTATTTTAAAATAAGCATAAATACATTTCTTCTGGACAG
CCATAATGCCCCCCCCAAGCGACGACCTTCACTGTAGCAGATGCATTTTC
TTTTCTGATGCCCACGTTTCAACAGGCTTCGGCACTTCACGGGGAAATTA
CAGCGGACGGCGCGCCACGCCGGGCCTTGCCGCTCGGTCGGCAACTTTGC
TTCTATAACGATCTGTTTGGGTGGGCTCGAATCGCCTTCCCCGCCCTGGC
AGATCGCCCCCCCCCAGACATGCTGTTCGGCCCGACTGAAGCAGGTACAA
ACAAACAGTACAACAAGTGAGTTGTAAGTTTAGGTTCGGTGGGTCCGTTT
GCAATCATATTACAAAGCTCTACTGATACCTGTGTGCGAAATGTGAAGAT
ATAAAATTATTGTACACTGATAATACCAGGTACTGTACTGAAGTGCGTGA
CCATCATACTTATcCTTCAAATTATCAATTATTGCCTTCTCGTTCCCACG
AGTACCTGGTACTTCTGTTAGAGCTGTCTGTACGCAAACGGACGGGTGGG
TACACCTCATTTCATGGGAATCTTACAAGAGCACGGCTCTTACCGATTCG
CTTTTTCACTGCGCCTGACCGTGGTGATTGTTTAGACTATGCAAGGGTTC
CCGATCTGGGCTACGGCGACGTCTTGGATGCTGTGCGCCACCTTCT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1168:184581..192526+

>mRNA_A-nodosum_M_contig1168.15.1 ID=mRNA_A-nodosum_M_contig1168.15.1|Name=mRNA_A-nodosum_M_contig1168.15.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at A-nodosum_M_contig1168:184581..192526+ (Ascophyllum nodosum dioecious)
GTGGGGGACTTTGGCGCTGCTCAGCGAGGCGAGGAGACGGAGGGAGGAAA
CGTCGTCTACCGCACCGACGTCTACACCCTGGATCACACGAGCCCGCGCA
TGGCTTCGGCACTTCACGGGGAAATTACAGCGGACGGCGCGCCACGCCGG
GCCTTGCCGCTCGGTCGGCAACTTTGCTTCTATAACGATCTGTTTGGGTG
GGCTCGAATCGCCTTCCCCGCCCTGGCAGATCGCCCCCCCCCAGACATGC
TGTTCGGCCCGACTGAAGCAGACTATGCAAGGGTTCCCGATCTGGGCTAC
GGCGACGTCTTGGATGCTGTGCGCCACCTT
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