mRNA_A-nodosum_M_contig1167.18.2 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1167.18.2 vs. uniprot
Match: D7FHZ4_ECTSI (PPC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHZ4_ECTSI) HSP 1 Score: 194 bits (494), Expect = 2.140e-57 Identity = 109/193 (56.48%), Postives = 132/193 (68.39%), Query Frame = 1
Query: 223 SPLVCYALRLWPGEELKGALAEFATNRAIRAGFIVSCVGSLRDVVLRLAGAERPSADNTAVPAKISSHDGYEGGIPRPSPQHQ--------------KADPVENRKQQQQEQHMLRTGSDARFEVLSLVGTLSPDGLHLHVTIGDEDGAVRGGHLVRATVHTTAEVVIGDAPALAFSREMDPHTGFKELVISG 759
S +VCYA+RL PGEELKG LAEF +++ IRAGFIVSCVGS+RDV LRLAGAE P A + P+ +PQ + +++++EQ MLRTG DARFE+ SLVGTLSP+GLHLH ++ DE GA+ GGHLVRATVHTTAE+VIG A +L FSREMDP TGFKELV+SG
Sbjct: 24 SSMVCYAIRLPPGEELKGVLAEFTSHKKIRAGFIVSCVGSVRDVSLRLAGAE-PLAGCS--PSSXXXXXXXXXXXXXXAPQENFTAGSHXXXXXXXXQLQEYHQHRREEEEQPMLRTGPDARFEICSLVGTLSPEGLHLHASLADEKGALCGGHLVRATVHTTAEIVIGVASSLEFSREMDPRTGFKELVVSG 213
BLAST of mRNA_A-nodosum_M_contig1167.18.2 vs. uniprot
Match: UPI0019954515 (DNA-binding protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=UPI0019954515) HSP 1 Score: 121 bits (304), Expect = 1.330e-30 Identity = 73/179 (40.78%), Postives = 95/179 (53.07%), Query Frame = 1
Query: 229 LVCYALRLWPGEELKGALAEFATNRAIRAGFIVSCVGSLRDVVLRLAGAERPSADNTAVPAKISSHDGYEGGIPRPSPQHQKADPVENRKQQQQEQHMLRTGSDARFEVLSLVGTLSPDGLHLHVTIGDEDGAVRGGHLVRAT-VHTTAEVVIGDAPALAFSREMDPHTGFKELVISGR 762
+ +ALRL PG++LK L FA + ++AGFIV+CVGSLR V LR A + P +LR D +FE++SLVGTLSPDG HLH+++ D GA GGHL+ ++TTAE+VIG+A L F RE+DP T FKEL I R
Sbjct: 1 MTVHALRLHPGQDLKRELDAFAKAQHLQAGFIVTCVGSLRKVALRPANLQEP---------------------------------------------LLR---DQKFEIVSLVGTLSPDGSHLHISLSDSTGATIGGHLLEGNEIYTTAEIVIGEAEHLQFHREIDPVTTFKELTIKKR 131
BLAST of mRNA_A-nodosum_M_contig1167.18.2 vs. uniprot
Match: A0A7R9T756_MICPS (Hypothetical protein (Fragment) n=2 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9T756_MICPS) HSP 1 Score: 115 bits (288), Expect = 1.250e-27 Identity = 68/177 (38.42%), Postives = 91/177 (51.41%), Query Frame = 1
Query: 229 LVCYALRLWPGEELKGALAEFATNRAIRAGFIVSCVGSLRDVVLRLAGAERPSADNTAVPAKISSHDGYEGGIPRPSPQHQKADPVENRKQQQQEQHMLRTGSDARFEVLSLVGTLSPDGLHLHVTIGDEDGAVRGGHLVRA-TVHTTAEVVIGDAPALAFSREMDPHTGFKELVIS 756
+ +A RL PGE+LK AL +A +R +RA F+++CVGSL V LRLA + R + D RFE++SL GTLS +G HLHV+I D +G V GGHL+ V TTAE+V+G++ F+REMD TGF ELV+S
Sbjct: 17 MEVHAFRLTPGEDLKKALCAYAASRKLRASFVLTCVGSLSAVTLRLANSARDGKNEVV-------------------------------------------SLDERFEIVSLTGTLSANGAHLHVSIADFEGNVVGGHLMDGCVVFTTAEIVLGESATHVFAREMDARTGFDELVVS 150
BLAST of mRNA_A-nodosum_M_contig1167.18.2 vs. uniprot
Match: A0A6P4ZVH6_BRABE (uncharacterized protein LOC109482578 n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4ZVH6_BRABE) HSP 1 Score: 113 bits (282), Expect = 3.700e-27 Identity = 69/183 (37.70%), Postives = 103/183 (56.28%), Query Frame = 1
Query: 223 SPLVCYALRLWPGEELKGALAEFATNRAIRAGFIVSCVGSLRDVVLRLAGAERPSADNTAVPAK--ISSHDGYEGGIPRPSPQHQKADPVENRKQQQQEQHMLRTGSDARFEVLSLVGTLSPDGLHLHVTIGDEDGAVRGGHLV-RATVHTTAEVVIGDAPALAFSREMDPHTGFKELVISGR 762
SP+VC++LRL PGEE++ AL +F + ++A F+++CVGS+ LRLA A+P K + H+ E D R+E++SLVGTL+ DG HLHV++ D+DGAV GGH++ TV TTAE+VIG++ ++ R M+ TGF +LV++ R
Sbjct: 3 SPVVCFSLRLGPGEEIQSALLKFVQEKQLQAPFVMTCVGSVSGGKLRLA---------KAMPDKSGVGKHEIIE--------------------------------LDQRYEIVSLVGTLN-DGTHLHVSLADKDGAVIGGHVMGNLTVFTTAEIVIGESTKESYGRVMEEETGFPQLVVNKR 143
BLAST of mRNA_A-nodosum_M_contig1167.18.2 vs. uniprot
Match: UPI001FE606CD (DNA-binding protein n=1 Tax=Spirosoma rigui TaxID=564064 RepID=UPI001FE606CD) HSP 1 Score: 108 bits (271), Expect = 1.840e-25 Identity = 68/181 (37.57%), Postives = 91/181 (50.28%), Query Frame = 1
Query: 223 SPLVCYALRLWPGEELKGALAEFATNRAIRAGFIVSCVGSLRDVVLRLAGAERPSADNTAVPAKISSHDGYEGGIPRPSPQHQKADPVENRKQQQQEQHMLRTGSDARFEVLSLVGTLSPDGLHLHVTIGDEDGAVRGGHLVRATV-HTTAEVVIGDAPALAFSREMDPHTGFKELVISGR 762
+PL Y+ RL PG++LK L F I AG I++CVGSL DV LRLA E+P+ ++G FE++SLVGTLS +G H+H+++ D G GGHL+ V +TTAEV++G P+L F RE DP G+KELVI R
Sbjct: 20 APLQTYSFRLRPGQDLKEQLEAFVRQERIGAGAILTCVGSLTDVSLRLANQEKPTI--------------WKG----------------------------------HFEIVSLVGTLSANGSHIHLSVSDSTGRTLGGHLMAGCVIYTTAEVLVGVMPSLDFVRETDPAFGYKELVIRKR 152
BLAST of mRNA_A-nodosum_M_contig1167.18.2 vs. uniprot
Match: A0A7C4ZXC1_9CHLR (DNA-binding protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C4ZXC1_9CHLR) HSP 1 Score: 107 bits (268), Expect = 2.580e-25 Identity = 66/179 (36.87%), Postives = 91/179 (50.84%), Query Frame = 1
Query: 229 LVCYALRLWPGEELKGALAEFATNRAIRAGFIVSCVGSLRDVVLRLAGAERPSADNTAVPAKISSHDGYEGGIPRPSPQHQKADPVENRKQQQQEQHMLRTGSDARFEVLSLVGTLSPDGLHLHVTIGDEDGAVRGGHLVRAT-VHTTAEVVIGDAPALAFSREMDPHTGFKELVISGR 762
+ +A+RL PG+++ L+ F +RAGFI++CVGSLR LRLA A+ T YE +FE++SLVGTL +G HLH+++ D +G GGHL+ V+TTAE+VIG+A AL FSR DP TG+ EL +S R
Sbjct: 1 MQLFAIRLRPGQDVGLELSRFVRENGLRAGFILTCVGSLRQAALRLAN----KAETTL----------YED----------------------------------KFEIVSLVGTLDAEGYHLHLSLSDGEGRTIGGHLMEGCLVYTTAEIVIGEADALVFSRPFDPETGYPELEVSQR 131
BLAST of mRNA_A-nodosum_M_contig1167.18.2 vs. uniprot
Match: A0A418M271_9BACT (DNA-binding protein n=1 Tax=Fibrisoma montanum TaxID=2305895 RepID=A0A418M271_9BACT) HSP 1 Score: 108 bits (270), Expect = 3.490e-25 Identity = 68/184 (36.96%), Postives = 90/184 (48.91%), Query Frame = 1
Query: 214 SGPSPLVCYALRLWPGEELKGALAEFATNRAIRAGFIVSCVGSLRDVVLRLAGAERPSADNTAVPAKISSHDGYEGGIPRPSPQHQKADPVENRKQQQQEQHMLRTGSDARFEVLSLVGTLSPDGLHLHVTIGDEDGAVRGGHLVRAT-VHTTAEVVIGDAPALAFSREMDPHTGFKELVISGR 762
S SP+ Y+ RL PG++LK L + I AG +V+CVGSL DV LRLA E PS ++G FE++SLVGTLS +G HLH+++ D G GGHL+ ++TTAE+VIG P L + RE DP G+KELV+ R
Sbjct: 28 SARSPMQTYSFRLRPGQDLKQQLDALVQQQRIEAGAVVTCVGSLTDVTLRLANQEGPSV--------------WQG----------------------------------HFEIVSLVGTLSVNGSHLHLSVSDSTGRTLGGHLLDGCRIYTTAEIVIGVMPDLVYVREPDPTFGYKELVVRKR 163
BLAST of mRNA_A-nodosum_M_contig1167.18.2 vs. uniprot
Match: A0A1G1T601_9BACT (PPC domain-containing protein n=2 Tax=Hymenobacter lapidarius TaxID=1908237 RepID=A0A1G1T601_9BACT) HSP 1 Score: 108 bits (270), Expect = 5.490e-25 Identity = 67/178 (37.64%), Postives = 90/178 (50.56%), Query Frame = 1
Query: 223 SPLVCYALRLWPGEELKGALAEFATNRAIRAGFIVSCVGSLRDVVLRLAGAERPSADNTAVPAKISSHDGYEGGIPRPSPQHQKADPVENRKQQQQEQHMLRTGSDARFEVLSLVGTLSPDGLHLHVTIGDEDGAVRGGHLVRAT-VHTTAEVVIGDAPALAFSREMDPHTGFKELVI 753
SPL YALRL PG++L+ L F + +RAG +++CVGSL LRLA + P+ Y G FE++SLVGTLS +G HLH+++ D G GGHL+ V+TTAE+V+G+ PAL F RE DP G++ELVI
Sbjct: 30 SPLKTYALRLRPGDDLRQQLTAFVQAQHMRAGAVLTCVGSLTVATLRLANQDGPTE--------------YRG----------------------------------HFEIVSLVGTLSTNGSHLHLSVADSTGRTIGGHLLDGCRVYTTAEIVLGELPALEFRREPDPTFGYQELVI 159
BLAST of mRNA_A-nodosum_M_contig1167.18.2 vs. uniprot
Match: UPI0019C938FB (DNA-binding protein n=1 Tax=Hymenobacter sp. TaxID=1898978 RepID=UPI0019C938FB) HSP 1 Score: 108 bits (269), Expect = 5.590e-25 Identity = 67/178 (37.64%), Postives = 88/178 (49.44%), Query Frame = 1
Query: 223 SPLVCYALRLWPGEELKGALAEFATNRAIRAGFIVSCVGSLRDVVLRLAGAERPSADNTAVPAKISSHDGYEGGIPRPSPQHQKADPVENRKQQQQEQHMLRTGSDARFEVLSLVGTLSPDGLHLHVTIGDEDGAVRGGHLVRAT-VHTTAEVVIGDAPALAFSREMDPHTGFKELVI 753
SPL YALRL PG++L+ L F T I+AG +++CVGSL LRLA + P+ Y G FE+LSLVGTLS +G HLH+ + D G GGHL+ V+TTAE+V+G+ PAL F RE D G++ELV+
Sbjct: 30 SPLKTYALRLRPGDDLRQQLVAFTTAHHIKAGAVLTCVGSLTVATLRLANQDGPTE--------------YRG----------------------------------HFEILSLVGTLSTNGSHLHLAVADSTGRTIGGHLLDGCRVYTTAEIVLGELPALEFRRETDATFGYQELVV 159
BLAST of mRNA_A-nodosum_M_contig1167.18.2 vs. uniprot
Match: A0A0P6XDV9_9CHLR (PPC domain-containing protein n=1 Tax=Ornatilinea apprima TaxID=1134406 RepID=A0A0P6XDV9_9CHLR) HSP 1 Score: 107 bits (266), Expect = 5.680e-25 Identity = 65/180 (36.11%), Postives = 88/180 (48.89%), Query Frame = 1
Query: 229 LVCYALRLWPGEELKGALAEFATNRAIRAGFIVSCVGSLRDVVLRLAGAERPSADNTAVPAKISSHDGYEGGIPRPSPQHQKADPVENRKQQQQEQHMLRTGSDARFEVLSLVGTLSPDGLHLHVTIGDEDGAVRGGHLVRAT-VHTTAEVVIGDAPALAFSREMDPHTGFKELVISGRG 765
+ Y LRL PG++L+ L +FA I+AGFI+SCVGSL+ LR+AG P A + + +FE+LSLVGT+SPD HLH+ + + D + GGHL + V TAE++IGD F RE+D TGF ELV+ RG
Sbjct: 1 MKTYVLRLHPGQDLRLELVKFAQENDIQAGFIISCVGSLKRAALRMAGQFGPVA----------------------------------------------SFFEEKFEILSLVGTISPDKPHLHIALSNADAKMVGGHLQGGSLVDLTAEIIIGDLEDKVFRRELDTQTGFPELVVYPRG 134 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1167.18.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1167.18.2 >prot_A-nodosum_M_contig1167.18.2 ID=prot_A-nodosum_M_contig1167.18.2|Name=mRNA_A-nodosum_M_contig1167.18.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=248bp MPRGLESESRSMLISAPCAEDIVGIDTATSTTTGIASGSQSPPPSEAKRRback to top mRNA from alignment at A-nodosum_M_contig1167:143701..146200- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1167.18.2 ID=mRNA_A-nodosum_M_contig1167.18.2|Name=mRNA_A-nodosum_M_contig1167.18.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2500bp|location=Sequence derived from alignment at A-nodosum_M_contig1167:143701..146200- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1167:143701..146200- >mRNA_A-nodosum_M_contig1167.18.2 ID=mRNA_A-nodosum_M_contig1167.18.2|Name=mRNA_A-nodosum_M_contig1167.18.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at A-nodosum_M_contig1167:143701..146200- (Ascophyllum nodosum dioecious)back to top |