mRNA_A-nodosum_M_contig1167.7.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1167.7.1
Unique NamemRNA_A-nodosum_M_contig1167.7.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1167.7.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 60.1 bits (144), Expect = 2.990e-9
Identity = 28/50 (56.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    1 KYKCRLVAQGFWQVEGVHYTEKYSPTPTTASIRMLLAMAAAEDGELRHFD 150
            KYK RLVAQGF QVEG+ Y E ++P   + SIR+LLA+AA  D E+   D
Sbjct: 1057 KYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMD 1106
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BLAST of mRNA_A-nodosum_M_contig1167.7.1 vs. uniprot
Match: A0A146H565_MYCCL (Polyprotein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H565_MYCCL)

HSP 1 Score: 58.9 bits (141), Expect = 7.640e-9
Identity = 28/50 (56.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 KYKCRLVAQGFWQVEGVHYTEKYSPTPTTASIRMLLAMAAAEDGELRHFD 150
            KYK RLVA+GF QV+GV Y E ++PT   ASIR++LA+AA  D ++  FD
Sbjct: 1124 KYKARLVARGFTQVQGVDYYETFAPTAKIASIRLVLAIAARNDWDIDMFD 1173
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BLAST of mRNA_A-nodosum_M_contig1167.7.1 vs. uniprot
Match: A0A0C3PIV1_PISTI (Uncharacterized protein (Fragment) n=1 Tax=Pisolithus tinctorius Marx 270 TaxID=870435 RepID=A0A0C3PIV1_PISTI)

HSP 1 Score: 58.5 bits (140), Expect = 1.040e-8
Identity = 28/50 (56.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 KYKCRLVAQGFWQVEGVHYTEKYSPTPTTASIRMLLAMAAAEDGELRHFD 150
            +YK RLVAQGF QVEG+ Y + ++P  T ASIR++LAMAA  + EL   D
Sbjct:  869 RYKARLVAQGFSQVEGIDYFDTFAPVATLASIRVVLAMAARSNLELHQID 918
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BLAST of mRNA_A-nodosum_M_contig1167.7.1 vs. uniprot
Match: A0A7S3Y1L1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1L1_HETAK)

HSP 1 Score: 57.0 bits (136), Expect = 3.610e-8
Identity = 26/50 (52.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 KYKCRLVAQGFWQVEGVHYTEKYSPTPTTASIRMLLAMAAAEDGELRHFD 150
            KYK RL AQG+ Q+EGV YT  +SP  ++AS+R +L +AA+ED E+   D
Sbjct:  293 KYKARLCAQGYSQIEGVDYTNTFSPVVSSASLRTVLTIAASEDMEIHCMD 342
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BLAST of mRNA_A-nodosum_M_contig1167.7.1 vs. uniprot
Match: A0A1C7MSU6_GRIFR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7MSU6_GRIFR)

HSP 1 Score: 57.0 bits (136), Expect = 3.640e-8
Identity = 28/50 (56.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    1 KYKCRLVAQGFWQVEGVHYTEKYSPTPTTASIRMLLAMAAAEDGELRHFD 150
            KYK R+VA+GF QVEGV YT+ ++P    ASIR LLA+AA  D E+   D
Sbjct:  344 KYKARVVAKGFTQVEGVDYTDTFAPVTKFASIRALLALAAKLDLEIHQMD 393
[Close]
BLAST of mRNA_A-nodosum_M_contig1167.7.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK)

HSP 1 Score: 57.0 bits (136), Expect = 3.650e-8
Identity = 26/50 (52.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 KYKCRLVAQGFWQVEGVHYTEKYSPTPTTASIRMLLAMAAAEDGELRHFD 150
            KYK RL AQG+ Q+EGV YT  +SP  ++AS+R +L +AA+ED E+   D
Sbjct:  546 KYKARLCAQGYSQIEGVDYTNTFSPVVSSASLRTVLTIAASEDMEIHCMD 595
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BLAST of mRNA_A-nodosum_M_contig1167.7.1 vs. uniprot
Match: M1VW57_CLAP2 (Related to retrotransposon HobS hobase n=1 Tax=Claviceps purpurea (strain 20.1) TaxID=1111077 RepID=M1VW57_CLAP2)

HSP 1 Score: 55.8 bits (133), Expect = 9.340e-8
Identity = 25/50 (50.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    1 KYKCRLVAQGFWQVEGVHYTEKYSPTPTTASIRMLLAMAAAEDGELRHFD 150
            +YK RLVA+GF QV G  Y + ++PT    ++R+ LAM AAED E  H+D
Sbjct: 1085 RYKARLVARGFSQVHGKDYDQTFAPTVRMDTLRLFLAMVAAEDDECSHYD 1134
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BLAST of mRNA_A-nodosum_M_contig1167.7.1 vs. uniprot
Match: A0A4S4KBB0_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4KBB0_9APHY)

HSP 1 Score: 55.1 bits (131), Expect = 1.730e-7
Identity = 26/50 (52.00%), Postives = 33/50 (66.00%), Query Frame = 1 
Query:    1 KYKCRLVAQGFWQVEGVHYTEKYSPTPTTASIRMLLAMAAAEDGELRHFD 150
            KYK RLVA+GF Q+EGV Y E ++P     SIR LLA+AA  + E+   D
Sbjct:  207 KYKARLVARGFTQIEGVDYNETFAPVSKFTSIRSLLALAAVHNLEIHQMD 256
[Close]
BLAST of mRNA_A-nodosum_M_contig1167.7.1 vs. uniprot
Match: A0A094DQM4_9PEZI (Integrase catalytic domain-containing protein n=1 Tax=Pseudogymnoascus sp. VKM F-4517 (FW-2822) TaxID=1420911 RepID=A0A094DQM4_9PEZI)

HSP 1 Score: 55.1 bits (131), Expect = 1.750e-7
Identity = 27/50 (54.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    1 KYKCRLVAQGFWQVEGVHYTEKYSPTPTTASIRMLLAMAAAEDGELRHFD 150
            ++K RLVAQGF QV G  Y E +SPT    S+R+LLA+ A ED E+R  D
Sbjct:  574 RFKARLVAQGFGQVPGDDYLETFSPTIRAESLRLLLAIGAYEDLEIRQID 623
[Close]
BLAST of mRNA_A-nodosum_M_contig1167.7.1 vs. uniprot
Match: A0A8H7TXH5_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Postia placenta TaxID=104341 RepID=A0A8H7TXH5_9APHY)

HSP 1 Score: 55.1 bits (131), Expect = 1.750e-7
Identity = 25/50 (50.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    1 KYKCRLVAQGFWQVEGVHYTEKYSPTPTTASIRMLLAMAAAEDGELRHFD 150
            K+K RL AQGF QV G+ Y E  +PT + +S+R++LA+AAA D E+   D
Sbjct:  778 KFKARLCAQGFSQVYGIDYVETAAPTASLSSLRLVLALAAANDWEIHQID 827
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1167.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0C2WN23_AMAMK2.990e-956.00Integrase catalytic domain-containing protein (Fra... [more]
A0A146H565_MYCCL7.640e-956.00Polyprotein n=1 Tax=Mycena chlorophos TaxID=658473... [more]
A0A0C3PIV1_PISTI1.040e-856.00Uncharacterized protein (Fragment) n=1 Tax=Pisolit... [more]
A0A7S3Y1L1_HETAK3.610e-852.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A1C7MSU6_GRIFR3.640e-856.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A7S3Y1P1_HETAK3.650e-852.00Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
M1VW57_CLAP29.340e-850.00Related to retrotransposon HobS hobase n=1 Tax=Cla... [more]
A0A4S4KBB0_9APHY1.730e-752.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A094DQM4_9PEZI1.750e-754.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A8H7TXH5_9APHY1.750e-750.00Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1167contigA-nodosum_M_contig1167:67737..67886 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog5217.XP_007002288.1
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size150
Max annot lvl4751|Fungi
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue4.36e-09
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3UY7N@5204|Basidiomycota,3VFTM@5234|Tremellales
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size150
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866573.2315762-CDS-A-nodosum_M_contig1167:67736..678861680866573.2315762-CDS-A-nodosum_M_contig1167:67736..67886Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1167 67737..67886 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1167.7.1prot_A-nodosum_M_contig1167.7.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1167 67737..67886 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1167.7.1

>prot_A-nodosum_M_contig1167.7.1 ID=prot_A-nodosum_M_contig1167.7.1|Name=mRNA_A-nodosum_M_contig1167.7.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=50bp
KYKCRLVAQGFWQVEGVHYTEKYSPTPTTASIRMLLAMAAAEDGELRHFD
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mRNA from alignment at A-nodosum_M_contig1167:67737..67886-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1167.7.1 ID=mRNA_A-nodosum_M_contig1167.7.1|Name=mRNA_A-nodosum_M_contig1167.7.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=150bp|location=Sequence derived from alignment at A-nodosum_M_contig1167:67737..67886- (Ascophyllum nodosum dioecious)
AAGTACAAGTGCCGACTCGTCGCACAAGGGTTCTGGCAGGTAGAAGGAGT
ACACTACACGGAAAAGTACTCGCCCACGCCAACGACCGCGTCAATCCGGA
TGCTTTTGGCGATGGCAGCGGCTGAGGACGGAGAGCTGCGCCATTTCGAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1167:67737..67886-

>mRNA_A-nodosum_M_contig1167.7.1 ID=mRNA_A-nodosum_M_contig1167.7.1|Name=mRNA_A-nodosum_M_contig1167.7.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=150bp|location=Sequence derived from alignment at A-nodosum_M_contig1167:67737..67886- (Ascophyllum nodosum dioecious)
AAGTACAAGTGCCGACTCGTCGCACAAGGGTTCTGGCAGGTAGAAGGAGT
ACACTACACGGAAAAGTACTCGCCCACGCCAACGACCGCGTCAATCCGGA
TGCTTTTGGCGATGGCAGCGGCTGAGGACGGAGAGCTGCGCCATTTCGAC
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