mRNA_A-nodosum_M_contig10060.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10060.2.1
Unique NamemRNA_A-nodosum_M_contig10060.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig10060.2.1 vs. uniprot
Match: A0A1Y1K2V0_PHOPY (Uncharacterized protein n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1K2V0_PHOPY)

HSP 1 Score: 81.3 bits (199), Expect = 4.260e-15
Identity = 46/140 (32.86%), Postives = 71/140 (50.71%), Query Frame = 1
Query:    1 VMEVHRMLSHPSEDITRKTAETMGIETTGQWGACETCFQAKAKRHAVPKKTDERARVRGQRFFVDVGGPMKHSSLGGNSYVVIFVDDCTRFKVVKFVKKKSDTTAALLSLIADYITPQKLSIKCVRTDNGGEFEEISART 420
            + E H ML H +     K     GIE T Q   CE C + K  R     +  +RA+  G+   VD+ GPM+ +S GG+ Y + F  D ++F+++KF+K+KS+TT  +  ++          +K +R D GGEF      T
Sbjct:  435 IQEWHEMLGHQNRVQVEKVLNRNGIEYTKQDFFCEACVKGKQHRKVFQVR-QQRAQREGEVMNVDLCGPMEITSYGGSRYFICFTCDYSKFRLIKFLKEKSETTKGIAEVLNFVKNQCGRPLKMLRCDGGGEFNNKDVTT 573          
BLAST of mRNA_A-nodosum_M_contig10060.2.1 vs. uniprot
Match: A0A8J6DA37_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6DA37_9ROSI)

HSP 1 Score: 78.6 bits (192), Expect = 3.670e-14
Identity = 40/102 (39.22%), Postives = 53/102 (51.96%), Query Frame = 1
Query:   94 GACETCFQAKAKRHAVPKKTDERARVRGQRFFVDVGGPMKHSSLGGNSYVVIFVDDCTRFKVVKFVKKKSDTTAALLSLIADYITPQKLSIKCVRTDNGGEF 399
            G CE C   K  R   P  T  RA  + +    DV GPM+  SL GN Y ++F+DDCTR+  V F+K KS+     +   A   T     IK +R+DNG E+
Sbjct:   21 GVCEVCQMGKQARLPFPTNTSWRASTKLELVHTDVCGPMRTESLSGNRYFILFIDDCTRYCWVYFLKHKSEVVQVFMKFKAAVETETGCKIKTIRSDNGTEY 122          
BLAST of mRNA_A-nodosum_M_contig10060.2.1 vs. uniprot
Match: A0A8J5YG39_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YG39_9ROSI)

HSP 1 Score: 75.9 bits (185), Expect = 3.330e-13
Identity = 45/134 (33.58%), Postives = 66/134 (49.25%), Query Frame = 1
Query:   13 HRMLSHPSED-----ITRKTAETMGIETTGQWGACETCFQAKAKRHAVPKKTDERARVRGQRFFVDVGGPMKHSSLGGNSYVVIFVDDCTRFKVVKFVKKKSDTTAALLSLIADYITPQKLSIKCVRTDNGGEF 399
            H+ LSH + +     +++K  E    +T    G  E C   K  R   P  T  RA  + +    DV GPM+  SL GN Y ++F+DDCT++  V F+K KS+     +   A   T     IK +R+DNG E+
Sbjct:  383 HQRLSHANFNSMARMVSKKMVENF-TKTVQNEGVYEVCQMGKQARLPFPTNTSWRASTKLELVHTDVCGPMRTESLSGNRYFILFIDDCTKYCWVYFLKHKSEVVQVFMKFKAVVETEIGCKIKTIRSDNGTEY 515          
BLAST of mRNA_A-nodosum_M_contig10060.2.1 vs. uniprot
Match: A0A8J5YZW8_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YZW8_9ROSI)

HSP 1 Score: 75.5 bits (184), Expect = 4.400e-13
Identity = 43/134 (32.09%), Postives = 65/134 (48.51%), Query Frame = 1
Query:   13 HRMLSHPS-----EDITRKTAETMGIETTGQWGACETCFQAKAKRHAVPKKTDERARVRGQRFFVDVGGPMKHSSLGGNSYVVIFVDDCTRFKVVKFVKKKSDTTAALLSLIADYITPQKLSIKCVRTDNGGEF 399
            H+ L H +     + ++++  E    +T      CE C   K  R   P  T  RA  + +    DV GPM+  SL GN Y ++F+DDCTR+  + F+K KS+     +   A   T     IK +R+DNG E+
Sbjct:  122 HQRLGHTNFKSMAQMVSKEMVENF-TKTVQSEDVCEVCQMGKQARLPFPTNTTWRASSKLELVHTDVCGPMRTESLSGNRYFILFIDDCTRYCWIYFLKHKSEVAQVFIKFKAAVETETGCKIKTIRSDNGTEY 254          
BLAST of mRNA_A-nodosum_M_contig10060.2.1 vs. uniprot
Match: A0A8J6D0F7_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6D0F7_9ROSI)

HSP 1 Score: 75.5 bits (184), Expect = 4.480e-13
Identity = 39/100 (39.00%), Postives = 53/100 (53.00%), Query Frame = 1
Query:  100 CETCFQAKAKRHAVPKKTDERARVRGQRFFVDVGGPMKHSSLGGNSYVVIFVDDCTRFKVVKFVKKKSDTTAALLSLIADYITPQKLSIKCVRTDNGGEF 399
            CE C   K  +   P     RA+ R Q  + D+ GPMK +SL G+ Y  +F+DDCTRF  V F+K+KSD         A         +KC+R+DNG E+
Sbjct:  454 CEVCQLDKQTKLPFPVNKAWRAQQRLQLVYTDICGPMKTTSLNGSRYFALFIDDCTRFCWVSFLKQKSDVVGFFCKFKALAKNQASCKLKCIRSDNGTEY 553          
BLAST of mRNA_A-nodosum_M_contig10060.2.1 vs. uniprot
Match: A0A8J6H6E3_TENMO (Integrase catalytic domain-containing protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6H6E3_TENMO)

HSP 1 Score: 74.3 bits (181), Expect = 5.810e-13
Identity = 44/135 (32.59%), Postives = 71/135 (52.59%), Query Frame = 1
Query:   10 VHRMLSHPS-EDITRKTAETM----GIETTGQWGACETCFQAKAKRHAVPKKTDERARVRGQRFFVDVGGPMKHSSLGGNSYVVIFVDDCTRFKVVKFVKKKSDTTAALLSLIADYITPQKLSIKCVRTDNGGEF 399
            +HR L H + +DI+    E +     +  T +   CE C Q K  R   P++++   +V       DV GPM+  SLGG  Y + F+DD +R+  V+F+K K++   A    IA     +   +KC+++DNGGE+
Sbjct:  100 LHRRLGHANTKDISSAVREHVVRGVRLANTPEKFNCEICLQGKMSRSPFPRRSNRLNKVL-DLVHTDVCGPMRTQSLGGAKYFIEFIDDASRWCEVRFLKSKAEVFKATTEYIALVENQKGKKVKCLQSDNGGEY 233          
BLAST of mRNA_A-nodosum_M_contig10060.2.1 vs. uniprot
Match: A0A8J6D2N4_9ROSI (Integrase catalytic domain-containing protein n=2 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6D2N4_9ROSI)

HSP 1 Score: 74.7 bits (182), Expect = 8.160e-13
Identity = 43/134 (32.09%), Postives = 65/134 (48.51%), Query Frame = 1
Query:   13 HRMLSHPS-----EDITRKTAETMGIETTGQWGACETCFQAKAKRHAVPKKTDERARVRGQRFFVDVGGPMKHSSLGGNSYVVIFVDDCTRFKVVKFVKKKSDTTAALLSLIADYITPQKLSIKCVRTDNGGEF 399
            H+ L H +     + ++++  E    +T      CE C   K  R   P  T  RA  + +    DV GPM+  SL GN Y ++F+DDCTR+  + F+K KS+     +   A   T     IK +R+DNG E+
Sbjct:  461 HQRLGHANFKSMAQMVSKEMVENF-TKTVQSEDVCEVCQMGKQARLPFPTNTTWRATSKLELVHSDVCGPMRTESLSGNRYFILFIDDCTRYCWIYFLKHKSEVAQVFIKFKAAVETETGCKIKTIRSDNGTEY 593          
BLAST of mRNA_A-nodosum_M_contig10060.2.1 vs. uniprot
Match: A0A8J5Y9W8_9ROSI (Integrase catalytic domain-containing protein n=2 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5Y9W8_9ROSI)

HSP 1 Score: 74.3 bits (181), Expect = 1.060e-12
Identity = 43/134 (32.09%), Postives = 65/134 (48.51%), Query Frame = 1
Query:   13 HRMLSHPS-----EDITRKTAETMGIETTGQWGACETCFQAKAKRHAVPKKTDERARVRGQRFFVDVGGPMKHSSLGGNSYVVIFVDDCTRFKVVKFVKKKSDTTAALLSLIADYITPQKLSIKCVRTDNGGEF 399
            H+ L H +     + ++++  E    +T      CE C   K  R   P  T  RA  + +    DV GPM+  SL GN Y ++F+DDCTR+  + F+K KS+     +   A   T     IK +R+DNG E+
Sbjct:  441 HQRLGHANFKSMAQMVSKEMVENF-TKTVQSEDVCEVCQMGKQARLPFPTDTTWRASSKLELVHSDVCGPMRTESLSGNRYFILFIDDCTRYCWIYFLKHKSEVAQVFIKFKAAVETETGCKIKTIRSDNGTEY 573          
BLAST of mRNA_A-nodosum_M_contig10060.2.1 vs. uniprot
Match: A0A8J6HVS3_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6HVS3_TENMO)

HSP 1 Score: 74.3 bits (181), Expect = 1.120e-12
Identity = 44/135 (32.59%), Postives = 71/135 (52.59%), Query Frame = 1
Query:   10 VHRMLSHPS-EDITRKTAETM----GIETTGQWGACETCFQAKAKRHAVPKKTDERARVRGQRFFVDVGGPMKHSSLGGNSYVVIFVDDCTRFKVVKFVKKKSDTTAALLSLIADYITPQKLSIKCVRTDNGGEF 399
            +HR L H + +DI+    E +     +  T +   CE C Q K  R   P++++   +V       DV GPM+  SLGG  Y + F+DD +R+  V+F+K K++   A    IA     +   +KC+++DNGGE+
Sbjct:  302 LHRRLGHANTKDISSAVREHVVRGVRLANTPEKFNCEICLQGKMSRSPFPRRSNRLNKVL-DLVHTDVCGPMRTQSLGGAKYFIEFIDDASRWCEVRFLKSKAEVFKATTEYIALVENQKGKKVKCLQSDNGGEY 435          
BLAST of mRNA_A-nodosum_M_contig10060.2.1 vs. uniprot
Match: A0A0J7KDP1_LASNI (Retrovirus-related gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KDP1_LASNI)

HSP 1 Score: 73.9 bits (180), Expect = 1.570e-12
Identity = 38/100 (38.00%), Postives = 54/100 (54.00%), Query Frame = 1
Query:  100 CETCFQAKAKRHAVPKKTDERARVRGQRFFVDVGGPMKHSSLGGNSYVVIFVDDCTRFKVVKFVKKKSDTTAALLSLIADYITPQKLSIKCVRTDNGGEF 399
            CE C +AK  R   P K+D    V       D+ GPM+  S+GG  Y++ F+DDC+R+  + F+K KSD   AL   +          IKC+++DNG EF
Sbjct:  454 CEACLEAKITRSPFPIKSDRTTAVL-DLVHTDLCGPMRIPSIGGAKYILHFIDDCSRWGQIYFLKSKSDVFQALKEYVVMIENQTGKKIKCIQSDNGKEF 552          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10060.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Y1K2V0_PHOPY4.260e-1532.86Uncharacterized protein n=1 Tax=Photinus pyralis T... [more]
A0A8J6DA37_9ROSI3.670e-1439.22Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J5YG39_9ROSI3.330e-1333.58Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J5YZW8_9ROSI4.400e-1332.09Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J6D0F7_9ROSI4.480e-1339.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J6H6E3_TENMO5.810e-1332.59Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J6D2N4_9ROSI8.160e-1332.09Integrase catalytic domain-containing protein n=2 ... [more]
A0A8J5Y9W8_9ROSI1.060e-1232.09Integrase catalytic domain-containing protein n=2 ... [more]
A0A8J6HVS3_TENMO1.120e-1232.59Uncharacterized protein n=1 Tax=Tenebrio molitor T... [more]
A0A0J7KDP1_LASNI1.570e-1238.00Retrovirus-related gag-pol polyprotein n=1 Tax=Las... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10060contigA-nodosum_M_contig10060:9011..9448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog159749.K0QZP2
PFAMsHelitron_like_N,PIF1
Model size438
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.55e-20
EggNOG OGsCOG0507@1|root,COG2801@1|root,KOG0017@2759|Eukaryota,KOG0987@2759|Eukaryota,2XG4E@2836|Bacillariophyta
DescriptionPIF1-like helicase
Cds size435
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866364.3257942-UTR-A-nodosum_M_contig10060:9010..90131680866364.3257942-UTR-A-nodosum_M_contig10060:9010..9013Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10060 9011..9013 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866364.3377101-CDS-A-nodosum_M_contig10060:9013..94481680866364.3377101-CDS-A-nodosum_M_contig10060:9013..9448Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10060 9014..9448 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10060.2.1prot_A-nodosum_M_contig10060.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10060 9014..9448 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10060.2.1

>prot_A-nodosum_M_contig10060.2.1 ID=prot_A-nodosum_M_contig10060.2.1|Name=mRNA_A-nodosum_M_contig10060.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=145bp
MEVHRMLSHPSEDITRKTAETMGIETTGQWGACETCFQAKAKRHAVPKKT
DERARVRGQRFFVDVGGPMKHSSLGGNSYVVIFVDDCTRFKVVKFVKKKS
DTTAALLSLIADYITPQKLSIKCVRTDNGGEFEEISARTEPAQYL
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mRNA from alignment at A-nodosum_M_contig10060:9011..9448+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10060.2.1 ID=mRNA_A-nodosum_M_contig10060.2.1|Name=mRNA_A-nodosum_M_contig10060.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=438bp|location=Sequence derived from alignment at A-nodosum_M_contig10060:9011..9448+ (Ascophyllum nodosum dioecious)
GTTATGGAGGTCCATCGAATGCTTTCGCACCCGAGCGAGGACATAACAAG AAAGACGGCCGAGACGATGGGGATCGAGACGACGGGCCAATGGGGAGCGT GTGAGACATGCTTCCAGGCTAAGGCAAAACGACATGCTGTGCCAAAGAAG ACGGACGAACGGGCGAGGGTGAGAGGACAGCGATTCTTCGTCGACGTGGG CGGGCCGATGAAGCACTCGAGTCTCGGCGGGAATAGCTACGTCGTCATTT TCGTGGACGACTGCACCCGCTTCAAGGTGGTAAAGTTCGTAAAGAAGAAG AGTGACACAACGGCCGCTCTCTTGTCTCTGATTGCGGATTATATTACACC GCAGAAGCTGTCGATCAAGTGCGTACGGACGGATAATGGTGGCGAGTTTG AGGAAATTTCAGCGCGGACTGAACCGGCGCAGTATCTC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10060:9011..9448+

>mRNA_A-nodosum_M_contig10060.2.1 ID=mRNA_A-nodosum_M_contig10060.2.1|Name=mRNA_A-nodosum_M_contig10060.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=435bp|location=Sequence derived from alignment at A-nodosum_M_contig10060:9011..9448+ (Ascophyllum nodosum dioecious)
ATGGAGGTCCATCGAATGCTTTCGCACCCGAGCGAGGACATAACAAGAAA
GACGGCCGAGACGATGGGGATCGAGACGACGGGCCAATGGGGAGCGTGTG
AGACATGCTTCCAGGCTAAGGCAAAACGACATGCTGTGCCAAAGAAGACG
GACGAACGGGCGAGGGTGAGAGGACAGCGATTCTTCGTCGACGTGGGCGG
GCCGATGAAGCACTCGAGTCTCGGCGGGAATAGCTACGTCGTCATTTTCG
TGGACGACTGCACCCGCTTCAAGGTGGTAAAGTTCGTAAAGAAGAAGAGT
GACACAACGGCCGCTCTCTTGTCTCTGATTGCGGATTATATTACACCGCA
GAAGCTGTCGATCAAGTGCGTACGGACGGATAATGGTGGCGAGTTTGAGG
AAATTTCAGCGCGGACTGAACCGGCGCAGTATCTC
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