prot_A-nodosum_M_contig11545.1.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig11545.1.1
Unique Nameprot_A-nodosum_M_contig11545.1.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length75
Homology
BLAST of mRNA_A-nodosum_M_contig11545.1.1 vs. uniprot
Match: A0A6H5K7J2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7J2_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 4.440e-14
Identity = 36/68 (52.94%), Postives = 48/68 (70.59%), Query Frame = 0
Query:    1 MRLPAGCGDMSGEVVLLQRAVYGLRQAGRQWSLRLSRVLRQKIVKHQSKADPCVFRKGVDGEVTLIDV 68
            +RLPAGCGD S +VV+ +RA+YGL+Q+GRQW    +  + +   + Q KADPCVFRK VD  V +I V
Sbjct:   32 LRLPAGCGDKSHKVVMAERAIYGLKQSGRQWGYHAADTVVENGFE-QCKADPCVFRKMVDEVVVMIIV 98          
BLAST of mRNA_A-nodosum_M_contig11545.1.1 vs. uniprot
Match: A0A6H5JC05_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC05_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 1.540e-13
Identity = 33/63 (52.38%), Postives = 45/63 (71.43%), Query Frame = 0
Query:    1 MRLPAGCGDMSGEVVLLQRAVYGLRQAGRQWSLRLSRVLRQKIVKHQSKADPCVFRKGVDGEV 63
            +R P GCG MSG+VV ++RA+YGL+Q+GR+W    +  L +   + Q + DPCVFRK VDGEV
Sbjct:   61 LRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYE-QCRVDPCVFRKVVDGEV 122          
BLAST of mRNA_A-nodosum_M_contig11545.1.1 vs. uniprot
Match: A0A6H5JK49_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK49_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 3.890e-13
Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = 0
Query:    1 MRLPAGCGDMSGEVVLLQRAVYGLRQAGRQWSLRLSRVLRQKIVKHQSKADPCVFRKGVDGEV 63
            +RLP GCG MSG+VV ++RA+YGL+Q+GR+W   ++  L +   + Q + DPCVFRK VDGEV
Sbjct:  411 LRLPEGCGSMSGKVVKVERALYGLKQSGREWGFEVADALIENGCE-QCRVDPCVFRKVVDGEV 472          
BLAST of mRNA_A-nodosum_M_contig11545.1.1 vs. uniprot
Match: A0A6H5KQ05_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ05_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 5.250e-13
Identity = 37/71 (52.11%), Postives = 48/71 (67.61%), Query Frame = 0
Query:    1 MRLPAGCGDMSGEVVLLQRAVYGLRQAGRQWSLRLSRVLRQKIVKHQSKADPCVFRKGVDGEVTLIDVFML 71
            +RLPAGCGD S ++V  +RA+YGL+Q+GRQW    +  L +   + Q KADPCVFRK VD  V +I V  L
Sbjct:  156 LRLPAGCGDKSHKIVKAERAIYGLKQSGRQWGYHAAGTLVESRFE-QCKADPCVFRKMVDEVVVMIIVIYL 225          
BLAST of mRNA_A-nodosum_M_contig11545.1.1 vs. uniprot
Match: A0A6H5K308_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K308_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 5.330e-13
Identity = 34/64 (53.12%), Postives = 46/64 (71.88%), Query Frame = 0
Query:    1 MRLPAGCGDMSGEVVLLQRAVYGLRQAGRQWSLRLSRVLRQKIVKHQSKADPCVFRKGVDGEVT 64
            +R P GCG MSG+VV ++RA+YGL+Q+GR+W    +  L +   + Q + DPCVFRK VDGEVT
Sbjct:  315 LRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYE-QCRVDPCVFRKVVDGEVT 377          
BLAST of mRNA_A-nodosum_M_contig11545.1.1 vs. uniprot
Match: A0A6H5KZ30_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ30_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 9.550e-13
Identity = 33/63 (52.38%), Postives = 45/63 (71.43%), Query Frame = 0
Query:    1 MRLPAGCGDMSGEVVLLQRAVYGLRQAGRQWSLRLSRVLRQKIVKHQSKADPCVFRKGVDGEV 63
            +R P GCG MSG+VV ++RA+YGL+Q+GR+W    +  L +   + Q + DPCVFRK VDGEV
Sbjct:  238 LRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALMENAYE-QCRFDPCVFRKVVDGEV 299          
BLAST of mRNA_A-nodosum_M_contig11545.1.1 vs. uniprot
Match: A0A6H5KMJ1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMJ1_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 9.850e-13
Identity = 38/68 (55.88%), Postives = 47/68 (69.12%), Query Frame = 0
Query:    1 MRLPAGCGDMSGEVVLLQRAVYGLRQAGRQWSLRLSRVLRQKIVKHQSKADPCVFRKGVDGEVTLIDV 68
            +RLPAGCGD S +VV  +RAVYGL+Q+GRQW    +  L +   + Q KADPCVFRK VD  V +I V
Sbjct:  298 LRLPAGCGDKSHKVVKAERAVYGLKQSGRQWGYHAADTLVENGFE-QCKADPCVFRKMVDQVVVMIIV 364          
BLAST of mRNA_A-nodosum_M_contig11545.1.1 vs. uniprot
Match: A0A6H5JJ03_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ03_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.010e-12
Identity = 36/68 (52.94%), Postives = 47/68 (69.12%), Query Frame = 0
Query:    1 MRLPAGCGDMSGEVVLLQRAVYGLRQAGRQWSLRLSRVLRQKIVKHQSKADPCVFRKGVDGEVTLIDV 68
            +RLPAGCGD S ++V  +RA+YGL+Q+GRQW    +  L +   + Q KADPCVFRK VD  V +I V
Sbjct:  474 LRLPAGCGDKSHKIVKTERAIYGLKQSGRQWGYHAADTLVENGFE-QCKADPCVFRKMVDEVVVMITV 540          
BLAST of mRNA_A-nodosum_M_contig11545.1.1 vs. uniprot
Match: A0A6H5JCR5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCR5_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.010e-12
Identity = 33/63 (52.38%), Postives = 45/63 (71.43%), Query Frame = 0
Query:    1 MRLPAGCGDMSGEVVLLQRAVYGLRQAGRQWSLRLSRVLRQKIVKHQSKADPCVFRKGVDGEV 63
            +R P GCG MSG+VV ++RA+YGL+Q+GR+W    +  L +   + Q K DPCVFRK VDG+V
Sbjct:  743 LRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYE-QCKVDPCVFRKAVDGDV 804          
BLAST of mRNA_A-nodosum_M_contig11545.1.1 vs. uniprot
Match: A0A6H5KLY3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLY3_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.490e-12
Identity = 36/68 (52.94%), Postives = 47/68 (69.12%), Query Frame = 0
Query:    1 MRLPAGCGDMSGEVVLLQRAVYGLRQAGRQWSLRLSRVLRQKIVKHQSKADPCVFRKGVDGEVTLIDV 68
            +RLPAGCGD S ++V  +RA+YGL+Q+GRQW    +  L +   + Q KADPCVFRK VD  V +I V
Sbjct:   32 LRLPAGCGDKSHKIVKAERAIYGLKQSGRQWGYHAADTLVENGFE-QCKADPCVFRKMVDEVVVMIIV 98          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11545.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K7J2_9PHAE4.440e-1452.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JC05_9PHAE1.540e-1352.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JK49_9PHAE3.890e-1353.97Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQ05_9PHAE5.250e-1352.11Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K308_9PHAE5.330e-1353.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZ30_9PHAE9.550e-1352.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KMJ1_9PHAE9.850e-1355.88Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JJ03_9PHAE1.010e-1252.94Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JCR5_9PHAE1.010e-1252.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KLY3_9PHAE1.490e-1252.94Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig11545contigA-nodosum_M_contig11545:640..864 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig11545.1.1mRNA_A-nodosum_M_contig11545.1.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig11545 640..891 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig11545.1.1 ID=prot_A-nodosum_M_contig11545.1.1|Name=mRNA_A-nodosum_M_contig11545.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=75bp
MRLPAGCGDMSGEVVLLQRAVYGLRQAGRQWSLRLSRVLRQKIVKHQSKA
DPCVFRKGVDGEVTLIDVFMLTTY*
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