mRNA_A-nodosum_M_contig11545.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig11545.1.1
Unique NamemRNA_A-nodosum_M_contig11545.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig11545.1.1 vs. uniprot
Match: A0A6H5K7J2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7J2_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 2.130e-17
Identity = 40/77 (51.95%), Postives = 54/77 (70.13%), Query Frame = 1 
Query:    1 HLHLDKAVYMRLPAGCGDMSGEVVLLQRAVYGLRQAGRQWSLRLSRVLRQKIVKHQSKADPCVFRKGVDGEVTLIDV 231
            H  LD+ V++RLPAGCGD S +VV+ +RA+YGL+Q+GRQW    +  + +   + Q KADPCVFRK VD  V +I V
Sbjct:   23 HATLDEEVFLRLPAGCGDKSHKVVMAERAIYGLKQSGRQWGYHAADTVVENGFE-QCKADPCVFRKMVDEVVVMIIV 98
[Close]
BLAST of mRNA_A-nodosum_M_contig11545.1.1 vs. uniprot
Match: A0A6H5JC05_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC05_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 2.140e-16
Identity = 36/72 (50.00%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:    1 HLHLDKAVYMRLPAGCGDMSGEVVLLQRAVYGLRQAGRQWSLRLSRVLRQKIVKHQSKADPCVFRKGVDGEV 216
            H  L + +Y+R P GCG MSG+VV ++RA+YGL+Q+GR+W    +  L +   + Q + DPCVFRK VDGEV
Sbjct:   52 HAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYE-QCRVDPCVFRKVVDGEV 122
[Close]
BLAST of mRNA_A-nodosum_M_contig11545.1.1 vs. uniprot
Match: A0A6H5KQ05_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ05_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.060e-15
Identity = 41/80 (51.25%), Postives = 54/80 (67.50%), Query Frame = 1 
Query:    1 HLHLDKAVYMRLPAGCGDMSGEVVLLQRAVYGLRQAGRQWSLRLSRVLRQKIVKHQSKADPCVFRKGVDGEVTLIDVFML 240
            H  LD+ V++RLPAGCGD S ++V  +RA+YGL+Q+GRQW    +  L +   + Q KADPCVFRK VD  V +I V  L
Sbjct:  147 HPTLDEEVFLRLPAGCGDKSHKIVKAERAIYGLKQSGRQWGYHAAGTLVESRFE-QCKADPCVFRKMVDEVVVMIIVIYL 225
[Close]
BLAST of mRNA_A-nodosum_M_contig11545.1.1 vs. uniprot
Match: A0A6H5JK49_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK49_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.090e-15
Identity = 37/72 (51.39%), Postives = 52/72 (72.22%), Query Frame = 1 
Query:    1 HLHLDKAVYMRLPAGCGDMSGEVVLLQRAVYGLRQAGRQWSLRLSRVLRQKIVKHQSKADPCVFRKGVDGEV 216
            H  L + +Y+RLP GCG MSG+VV ++RA+YGL+Q+GR+W   ++  L +   + Q + DPCVFRK VDGEV
Sbjct:  402 HAKLKEEIYLRLPEGCGSMSGKVVKVERALYGLKQSGREWGFEVADALIENGCE-QCRVDPCVFRKVVDGEV 472
[Close]
BLAST of mRNA_A-nodosum_M_contig11545.1.1 vs. uniprot
Match: A0A6H5JJ03_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ03_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.110e-15
Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = 1 
Query:    1 HLHLDKAVYMRLPAGCGDMSGEVVLLQRAVYGLRQAGRQWSLRLSRVLRQKIVKHQSKADPCVFRKGVDGEVTLIDV 231
            H  LD+ V++RLPAGCGD S ++V  +RA+YGL+Q+GRQW    +  L +   + Q KADPCVFRK VD  V +I V
Sbjct:  465 HATLDEEVFLRLPAGCGDKSHKIVKTERAIYGLKQSGRQWGYHAADTLVENGFE-QCKADPCVFRKMVDEVVVMITV 540
[Close]
BLAST of mRNA_A-nodosum_M_contig11545.1.1 vs. uniprot
Match: A0A6H5KMJ1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMJ1_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.470e-15
Identity = 41/77 (53.25%), Postives = 53/77 (68.83%), Query Frame = 1 
Query:    1 HLHLDKAVYMRLPAGCGDMSGEVVLLQRAVYGLRQAGRQWSLRLSRVLRQKIVKHQSKADPCVFRKGVDGEVTLIDV 231
            H  LD+ +++RLPAGCGD S +VV  +RAVYGL+Q+GRQW    +  L +   + Q KADPCVFRK VD  V +I V
Sbjct:  289 HATLDEEIFLRLPAGCGDKSHKVVKAERAVYGLKQSGRQWGYHAADTLVENGFE-QCKADPCVFRKMVDQVVVMIIV 364
[Close]
BLAST of mRNA_A-nodosum_M_contig11545.1.1 vs. uniprot
Match: A0A6H5K308_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K308_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.500e-15
Identity = 37/73 (50.68%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:    1 HLHLDKAVYMRLPAGCGDMSGEVVLLQRAVYGLRQAGRQWSLRLSRVLRQKIVKHQSKADPCVFRKGVDGEVT 219
            H  L + +Y+R P GCG MSG+VV ++RA+YGL+Q+GR+W    +  L +   + Q + DPCVFRK VDGEVT
Sbjct:  306 HAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYE-QCRVDPCVFRKVVDGEVT 377
[Close]
BLAST of mRNA_A-nodosum_M_contig11545.1.1 vs. uniprot
Match: A0A6H5KZ30_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ30_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 2.530e-15
Identity = 36/72 (50.00%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:    1 HLHLDKAVYMRLPAGCGDMSGEVVLLQRAVYGLRQAGRQWSLRLSRVLRQKIVKHQSKADPCVFRKGVDGEV 216
            H  L + +Y+R P GCG MSG+VV ++RA+YGL+Q+GR+W    +  L +   + Q + DPCVFRK VDGEV
Sbjct:  229 HAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALMENAYE-QCRFDPCVFRKVVDGEV 299
[Close]
BLAST of mRNA_A-nodosum_M_contig11545.1.1 vs. uniprot
Match: A0A6H5JCR5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCR5_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 2.850e-15
Identity = 36/72 (50.00%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:    1 HLHLDKAVYMRLPAGCGDMSGEVVLLQRAVYGLRQAGRQWSLRLSRVLRQKIVKHQSKADPCVFRKGVDGEV 216
            H  L + +Y+R P GCG MSG+VV ++RA+YGL+Q+GR+W    +  L +   + Q K DPCVFRK VDG+V
Sbjct:  734 HAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYE-QCKVDPCVFRKAVDGDV 804
[Close]
BLAST of mRNA_A-nodosum_M_contig11545.1.1 vs. uniprot
Match: A0A6H5JUE2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUE2_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 5.100e-15
Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 1 
Query:    1 HLHLDKAVYMRLPAGCGDMSGEVVLLQRAVYGLRQAGRQWSLRLSRVLRQKIVKHQSKADPCVFRKGVDGEV 216
            H  L + +Y+R P GCG MSG+VV ++RA+YGL Q+GR+W    +  L +   K Q + DPCVFRK VDGEV
Sbjct:  135 HAKLTEEIYLRFPEGCGSMSGKVVKVERALYGLMQSGREWGFEAADALIENGYK-QCRVDPCVFRKVVDGEV 205
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11545.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K7J2_9PHAE2.130e-1751.95Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JC05_9PHAE2.140e-1650.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQ05_9PHAE1.060e-1551.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JK49_9PHAE1.090e-1551.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JJ03_9PHAE1.110e-1551.95Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KMJ1_9PHAE1.470e-1553.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K308_9PHAE1.500e-1550.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZ30_9PHAE2.530e-1550.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JCR5_9PHAE2.850e-1550.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JUE2_9PHAE5.100e-1551.39Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig11545contigA-nodosum_M_contig11545:640..891 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog5286.M7WCH5
PFAMsDUF5314,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size252
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.39e-06
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3UY7N@5204|Basidiomycota,2YC45@29000|Pucciniomycotina
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size225
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866558.818481-CDS-A-nodosum_M_contig11545:639..8641680866558.818481-CDS-A-nodosum_M_contig11545:639..864Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11545 640..864 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866558.835018-UTR-A-nodosum_M_contig11545:864..8911680866558.835018-UTR-A-nodosum_M_contig11545:864..891Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11545 865..891 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig11545.1.1prot_A-nodosum_M_contig11545.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig11545 640..864 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig11545.1.1

>prot_A-nodosum_M_contig11545.1.1 ID=prot_A-nodosum_M_contig11545.1.1|Name=mRNA_A-nodosum_M_contig11545.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=75bp
MRLPAGCGDMSGEVVLLQRAVYGLRQAGRQWSLRLSRVLRQKIVKHQSKA
DPCVFRKGVDGEVTLIDVFMLTTY*
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mRNA from alignment at A-nodosum_M_contig11545:640..891-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig11545.1.1 ID=mRNA_A-nodosum_M_contig11545.1.1|Name=mRNA_A-nodosum_M_contig11545.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=252bp|location=Sequence derived from alignment at A-nodosum_M_contig11545:640..891- (Ascophyllum nodosum dioecious)
CACCTGCACTTGGACAAAGCTGTATACATGAGGCTTCCCGCCGGTTGCGG
GGACATGAGCGGTGAAGTCGTCCTGCTGCAGCGTGCTGTGTATGGACTTC
GACAGGCTGGTAGACAATGGAGTTTGCGGCTTAGTAGAGTGCTTCGGCAG
AAAATTGTCAAGCACCAGAGTAAGGCTGACCCGTGTGTGTTCCGTAAGGG
GGTGGATGGGGAGGTTACCCTCATCGATGTGTTCATGTTGACGACCTATT
AA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig11545:640..891-

>mRNA_A-nodosum_M_contig11545.1.1 ID=mRNA_A-nodosum_M_contig11545.1.1|Name=mRNA_A-nodosum_M_contig11545.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=225bp|location=Sequence derived from alignment at A-nodosum_M_contig11545:640..891- (Ascophyllum nodosum dioecious)
ATGAGGCTTCCCGCCGGTTGCGGGGACATGAGCGGTGAAGTCGTCCTGCT
GCAGCGTGCTGTGTATGGACTTCGACAGGCTGGTAGACAATGGAGTTTGC
GGCTTAGTAGAGTGCTTCGGCAGAAAATTGTCAAGCACCAGAGTAAGGCT
GACCCGTGTGTGTTCCGTAAGGGGGTGGATGGGGAGGTTACCCTCATCGA
TGTGTTCATGTTGACGACCTATTAA
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