mRNA_A-nodosum_M_contig11540.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig11540.1.1
Unique NamemRNA_A-nodosum_M_contig11540.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig11540.1.1 vs. uniprot
Match: A0A6H5JJG6_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG6_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.170e-17
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    7 YVVLAMNDGSHLCSCRMLQTLGLCCRHFWMSMHLSCKFRFHIGILNQ 147
            Y+VL M DGSHLCSCR LQ LGLCCRHFW +M LS +++FH+GILNQ
Sbjct:  647 YIVLGMTDGSHLCSCRTLQELGLCCRHFWAAMRLSRRYKFHVGILNQ 693
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BLAST of mRNA_A-nodosum_M_contig11540.1.1 vs. uniprot
Match: A0A6H5JBU5_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBU5_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.540e-17
Identity = 34/49 (69.39%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    1 MPYVVLAMNDGSHLCSCRMLQTLGLCCRHFWMSMHLSCKFRFHIGILNQ 147
            M Y+V +M DGSH+CSCR LQ LGLCCRHFW +M LS KF+FH+GILN+
Sbjct:  361 MRYIVCSMQDGSHICSCRTLQELGLCCRHFWQAMRLSPKFKFHVGILNR 409
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BLAST of mRNA_A-nodosum_M_contig11540.1.1 vs. uniprot
Match: A0A6H5K4E9_9PHAE (SWIM-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4E9_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.000e-12
Identity = 28/47 (59.57%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    7 YVVLAMNDGSHLCSCRMLQTLGLCCRHFWMSMHLSCKFRFHIGILNQ 147
            Y+VL  +DGSHLC CR LQTLGL CRH W ++  S +FRFH+G+L++
Sbjct:  164 YLVLLFSDGSHLCQCRTLQTLGLFCRHVWAAIMHSPRFRFHVGVLHE 210
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BLAST of mRNA_A-nodosum_M_contig11540.1.1 vs. uniprot
Match: A0A6H5K3E8_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3E8_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.070e-11
Identity = 27/47 (57.45%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    7 YVVLAMNDGSHLCSCRMLQTLGLCCRHFWMSMHLSCKFRFHIGILNQ 147
            Y++L  +DGS+LC CR LQTLGL CRH W +M  S +FRFH+G+L++
Sbjct:  388 YLILLFSDGSNLCQCRTLQTLGLFCRHVWAAMMHSPRFRFHVGLLHE 434
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BLAST of mRNA_A-nodosum_M_contig11540.1.1 vs. uniprot
Match: A0A6H5JUZ2_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUZ2_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 3.340e-10
Identity = 27/41 (65.85%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    7 YVVLAMNDGSHLCSCRMLQTLGLCCRHFWMSMHLSCKFRFH 129
            Y+VL  +DGSHLC CR LQTLGL CRH W +M  S +FRFH
Sbjct:  605 YLVLLFSDGSHLCQCRTLQTLGLFCRHVWAAMMHSPRFRFH 645
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BLAST of mRNA_A-nodosum_M_contig11540.1.1 vs. uniprot
Match: A0A6H5LMZ3_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LMZ3_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 6.250e-10
Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    7 YVVLAMNDGSHLCSCRMLQTLGLCCRHFWMSMHLSCKFRFHIGILNQ 147
            Y+VL  +DGS LC CR LQTLGL CRH   +M  S +FRFH+G+L++
Sbjct:  884 YLVLLFSDGSRLCQCRTLQTLGLFCRHVLAAMMHSPRFRFHVGLLHE 930
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BLAST of mRNA_A-nodosum_M_contig11540.1.1 vs. uniprot
Match: A0A6H5L2X8_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2X8_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.430e-9
Identity = 27/55 (49.09%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:    7 YVVLAMNDGSHLCSCRMLQTLGLCCRHFWMSM--------HLSCKFRFHIGILNQ 147
            Y+VL  +DGSHLC C  LQTLGL CRH W +M         +   FRFH+G+L++
Sbjct:  233 YLVLLFSDGSHLCQCLTLQTLGLFCRHVWAAMMHSPRFTFQIGLPFRFHVGLLHE 287
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BLAST of mRNA_A-nodosum_M_contig11540.1.1 vs. uniprot
Match: A0A015JEP7_RHIIW (SWIM-type domain-containing protein n=3 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A015JEP7_RHIIW)

HSP 1 Score: 53.9 bits (128), Expect = 3.970e-7
Identity = 21/47 (44.68%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:    7 YVVLAMNDGSHLCSCRMLQTLGLCCRHFWMSMHLSCKFRFHIGILNQ 147
            Y V+ M DGSH C+C +L + G+ CRHF+  +  S + +FHI ++NQ
Sbjct:   83 YFVILMADGSHSCTCNLLISFGIPCRHFYKVLRKSLQAKFHISLINQ 129
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BLAST of mRNA_A-nodosum_M_contig11540.1.1 vs. uniprot
Match: U9U182_RHIID (SWIM-type domain-containing protein n=2 Tax=Rhizophagus irregularis (strain DAOM 181602 / DAOM 197198 / MUCL 43194) TaxID=747089 RepID=U9U182_RHIID)

HSP 1 Score: 50.8 bits (120), Expect = 4.850e-6
Identity = 19/48 (39.58%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:    7 YVVLAMNDGSHLCSCRMLQTLGLCCRHFWMSMHLSCKFRFHIGILNQQ 150
            + V+ M DGSH C+C +L + G+ CRHF+  +  S + +FHI ++N++
Sbjct:   56 HFVILMADGSHSCTCNLLISFGIPCRHFYKVLRKSLQAKFHISLINRR 103
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BLAST of mRNA_A-nodosum_M_contig11540.1.1 vs. uniprot
Match: UPI001C187086 (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C187086)

HSP 1 Score: 47.8 bits (112), Expect = 2.470e-5
Identity = 18/46 (39.13%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:    7 YVVLAMNDGSHLCSCRMLQTLGLCCRHFWMSMHLSCKFRFHIGILN 144
            + V+ M DGSH C+C +L +  + CRHF+  +  S + +FHI ++N
Sbjct:   97 HFVILMADGSHSCTCNLLISFAIPCRHFYKVLRKSSQAKFHISLIN 142
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11540.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JJG6_9PHAE1.170e-1772.34SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JBU5_9PHAE1.540e-1769.39SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5K4E9_9PHAE1.000e-1259.57SWIM-type domain-containing protein (Fragment) n=1... [more]
A0A6H5K3E8_9PHAE1.070e-1157.45SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JUZ2_9PHAE3.340e-1065.85SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5LMZ3_9PHAE6.250e-1057.45SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L2X8_9PHAE1.430e-949.09SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A015JEP7_RHIIW3.970e-744.68SWIM-type domain-containing protein n=3 Tax=Rhizop... [more]
U9U182_RHIID4.850e-639.58SWIM-type domain-containing protein n=2 Tax=Rhizop... [more]
UPI001C1870862.470e-539.13Hypothetical protein n=1 Tax=Rhizophagus irregular... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig11540contigA-nodosum_M_contig11540:8953..9102 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LU83
Preferred nameFHY3
PFAMsFAR1,MULE,SWIM
Model size150
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0007154,GO:0007165,GO:0007602,GO:0007623,GO:0008150,GO:0009314,GO:0009416,GO:0009581,GO:0009582,GO:0009583,GO:0009585,GO:0009605,GO:0009628,GO:0009639,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010017,GO:0010018,GO:0010218,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0023052,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0042752,GO:0042753,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045893,GO:0045935,GO:0048511,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051606,GO:0051716,GO:0060255,GO:0065007,GO:0071214,GO:0071478,GO:0071482,GO:0071489,GO:0071490,GO:0080090,GO:0104004,GO:0140110,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Exons1
Evalue9.42e-13
EggNOG OGs2CMBY@1|root,2QPXR@2759|Eukaryota
DescriptionMULE transposase domain
Cds size150
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866558.7859874-CDS-A-nodosum_M_contig11540:8952..91021680866558.7859874-CDS-A-nodosum_M_contig11540:8952..9102Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11540 8953..9102 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig11540.1.1prot_A-nodosum_M_contig11540.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig11540 8953..9102 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig11540.1.1

>prot_A-nodosum_M_contig11540.1.1 ID=prot_A-nodosum_M_contig11540.1.1|Name=mRNA_A-nodosum_M_contig11540.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=50bp
MPYVVLAMNDGSHLCSCRMLQTLGLCCRHFWMSMHLSCKFRFHIGILNQQ
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mRNA from alignment at A-nodosum_M_contig11540:8953..9102+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig11540.1.1 ID=mRNA_A-nodosum_M_contig11540.1.1|Name=mRNA_A-nodosum_M_contig11540.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=150bp|location=Sequence derived from alignment at A-nodosum_M_contig11540:8953..9102+ (Ascophyllum nodosum dioecious)
ATGCCGTATGTAGTCCTCGCCATGAACGACGGCAGCCATCTTTGCTCGTG
TCGCATGCTGCAGACCCTCGGCCTTTGCTGCCGTCATTTTTGGATGTCGA
TGCACCTCAGCTGTAAGTTCAGGTTCCACATAGGGATACTTAACCAGCAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig11540:8953..9102+

>mRNA_A-nodosum_M_contig11540.1.1 ID=mRNA_A-nodosum_M_contig11540.1.1|Name=mRNA_A-nodosum_M_contig11540.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=150bp|location=Sequence derived from alignment at A-nodosum_M_contig11540:8953..9102+ (Ascophyllum nodosum dioecious)
ATGCCGTATGTAGTCCTCGCCATGAACGACGGCAGCCATCTTTGCTCGTG
TCGCATGCTGCAGACCCTCGGCCTTTGCTGCCGTCATTTTTGGATGTCGA
TGCACCTCAGCTGTAAGTTCAGGTTCCACATAGGGATACTTAACCAGCAG
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