mRNA_A-nodosum_M_contig1151.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1151.5.1
Unique NamemRNA_A-nodosum_M_contig1151.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1151.5.1 vs. uniprot
Match: A0A6H5L6A1_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6A1_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 2.020e-10
Identity = 34/63 (53.97%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:    4 VEVFGAFGLTISESKTETMCM-----------PIPRAPIVFNATGQQYRQTTSFTYLGGTVTE 159
            VEVFG FGLT+SE KTET+ M           PIP  P+   A GQ+Y QTT F YLGG V E
Sbjct:  250 VEVFGEFGLTVSEKKTETLLMRAKDKPTTTSQPIPPPPLTIEAAGQKYAQTTEFRYLGGLVNE 312
[Close]
BLAST of mRNA_A-nodosum_M_contig1151.5.1 vs. uniprot
Match: A0A6H5KVC3_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVC3_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 3.320e-10
Identity = 33/63 (52.38%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:    4 VEVFGAFGLTISESKTETMCM-----------PIPRAPIVFNATGQQYRQTTSFTYLGGTVTE 159
            VEVFG FGLT+SE KTET+ M           P P  P+   A GQ+Y QTT F YLGG V E
Sbjct:   97 VEVFGEFGLTVSEKKTETLLMREKDKPTTTSHPTPPPPLTIEAAGQKYAQTTEFRYLGGLVNE 159
[Close]
BLAST of mRNA_A-nodosum_M_contig1151.5.1 vs. uniprot
Match: A0A6H5KEZ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ9_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 3.360e-10
Identity = 32/63 (50.79%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:    4 VEVFGAFGLTISESKTETMCM-----------PIPRAPIVFNATGQQYRQTTSFTYLGGTVTE 159
            V+VFG FGLT+SE KTET+ M           P P  P+   A GQ+Y QTT F YLGG V E
Sbjct:   25 VDVFGEFGLTVSEKKTETLLMRAKDKPNTTSQPTPPPPLTIEAAGQKYAQTTEFRYLGGLVNE 87
[Close]
BLAST of mRNA_A-nodosum_M_contig1151.5.1 vs. uniprot
Match: A0A6H5K038_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K038_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 3.360e-10
Identity = 33/63 (52.38%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:    4 VEVFGAFGLTISESKTETMCM-----------PIPRAPIVFNATGQQYRQTTSFTYLGGTVTE 159
            VEVFG FGLT+SE KTET+ M           P P  P+   A GQ+Y QTT F YLGG V E
Sbjct:   25 VEVFGEFGLTVSEKKTETLLMRAKDKPTTTSQPAPPPPLTIEAAGQKYAQTTEFRYLGGLVNE 87
[Close]
BLAST of mRNA_A-nodosum_M_contig1151.5.1 vs. uniprot
Match: A0A6H5JAH7_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAH7_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 5.990e-10
Identity = 33/63 (52.38%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:    4 VEVFGAFGLTISESKTETMCM-----------PIPRAPIVFNATGQQYRQTTSFTYLGGTVTE 159
            VEVFG FGLT+SE KTET+ M           P P  P+   A GQ+Y QTT F YLGG V E
Sbjct:   25 VEVFGEFGLTVSEKKTETLLMRAKDKPTTTSQPAPPPPLTIEAAGQKYAQTTEFRYLGGLVNE 87
[Close]
BLAST of mRNA_A-nodosum_M_contig1151.5.1 vs. uniprot
Match: A0A6H5JZJ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZJ9_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 7.550e-10
Identity = 33/63 (52.38%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:    4 VEVFGAFGLTISESKTETMCM-----------PIPRAPIVFNATGQQYRQTTSFTYLGGTVTE 159
            VEVFG FGLT+SE KTET+ M           P P  P+   A GQ+Y QTT F YLGG V E
Sbjct:  139 VEVFGEFGLTVSEKKTETLLMRAKYKPTTTSQPAPPPPLTIEAAGQKYAQTTEFRYLGGLVNE 201
[Close]
BLAST of mRNA_A-nodosum_M_contig1151.5.1 vs. uniprot
Match: A0A6H5JFG6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG6_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 9.500e-10
Identity = 33/63 (52.38%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:    4 VEVFGAFGLTISESKTETMCM-----------PIPRAPIVFNATGQQYRQTTSFTYLGGTVTE 159
            VEVFG FGLT+SE KTET+ M           P P  P+   A GQ+Y QTT F YLGG V E
Sbjct:  279 VEVFGEFGLTVSEKKTETLLMRAKDKPTTTSQPAPPPPLTIEAAGQKYAQTTEFRYLGGLVNE 341
[Close]
BLAST of mRNA_A-nodosum_M_contig1151.5.1 vs. uniprot
Match: A0A6H5JT43_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT43_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 9.650e-10
Identity = 33/63 (52.38%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:    4 VEVFGAFGLTISESKTETMCM-----------PIPRAPIVFNATGQQYRQTTSFTYLGGTVTE 159
            VEVFG FGLT+SE KTET+ M           P P  P+   A GQ+Y QTT F YLGG V E
Sbjct:  151 VEVFGEFGLTVSEKKTETLLMRAKDKPTTTSQPAPPPPLTIEAAGQKYAQTTEFRYLGGLVNE 213
[Close]
BLAST of mRNA_A-nodosum_M_contig1151.5.1 vs. uniprot
Match: A0A6H5JWQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWQ3_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 9.660e-10
Identity = 33/63 (52.38%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:    4 VEVFGAFGLTISESKTETMCM-----------PIPRAPIVFNATGQQYRQTTSFTYLGGTVTE 159
            VEVFG FGLT+SE KTET+ M           P P  P+   A GQ+Y QTT F YLGG V E
Sbjct:  278 VEVFGEFGLTVSEKKTETLLMRATDKPTTTSQPAPPPPLTIEAAGQKYAQTTEFRYLGGLVNE 340
[Close]
BLAST of mRNA_A-nodosum_M_contig1151.5.1 vs. uniprot
Match: A0A6H5K2V9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2V9_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 9.700e-10
Identity = 33/63 (52.38%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:    4 VEVFGAFGLTISESKTETMCM-----------PIPRAPIVFNATGQQYRQTTSFTYLGGTVTE 159
            VEVFG FGLT+SE KTET+ M           P P  P+   A GQ+Y QTT F YLGG V E
Sbjct:  172 VEVFGEFGLTVSEKKTETLLMRAKDKPTTTSQPAPPPPLTIEAAGQKYAQTTEFRYLGGLVNE 234
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1151.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6A1_9PHAE2.020e-1053.97Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KVC3_9PHAE3.320e-1052.38Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KEZ9_9PHAE3.360e-1050.79Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K038_9PHAE3.360e-1052.38Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JAH7_9PHAE5.990e-1052.38Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JZJ9_9PHAE7.550e-1052.38Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JFG6_9PHAE9.500e-1052.38Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JT43_9PHAE9.650e-1052.38Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JWQ3_9PHAE9.660e-1052.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2V9_9PHAE9.700e-1052.38Reverse transcriptase domain-containing protein n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1151contigA-nodosum_M_contig1151:41607..41774 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size160
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size159
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866556.3301294-CDS-A-nodosum_M_contig1151:41606..416811680866556.3301294-CDS-A-nodosum_M_contig1151:41606..41681Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1151 41607..41681 -
1680866556.3412125-CDS-A-nodosum_M_contig1151:41690..417741680866556.3412125-CDS-A-nodosum_M_contig1151:41690..41774Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1151 41691..41774 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1151.5.1prot_A-nodosum_M_contig1151.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1151 41607..41774 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1151.5.1

>prot_A-nodosum_M_contig1151.5.1 ID=prot_A-nodosum_M_contig1151.5.1|Name=mRNA_A-nodosum_M_contig1151.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=53bp
FVEVFGAFGLTISESKTETMCMPIPRAPIVFNATGQQYRQTTSFTYLGGT
VTE
back to top

mRNA from alignment at A-nodosum_M_contig1151:41607..41774-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1151.5.1 ID=mRNA_A-nodosum_M_contig1151.5.1|Name=mRNA_A-nodosum_M_contig1151.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=168bp|location=Sequence derived from alignment at A-nodosum_M_contig1151:41607..41774- (Ascophyllum nodosum dioecious)
TTCGTCGAAGTCTTCGGCGCATTTGGTCTGACCATCTCAGAGAGCAAGAC
GGAGACCATGTGCATGCCGATCCCGCGCGCACCGGCAACGAAGATAGTCT
TCAACGCCACGGGGCAACAGTACCGTCAGACAACCTCCTTCACCTACTTG
GGAGGCACAGTGACTGAA
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1151:41607..41774-

>mRNA_A-nodosum_M_contig1151.5.1 ID=mRNA_A-nodosum_M_contig1151.5.1|Name=mRNA_A-nodosum_M_contig1151.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=159bp|location=Sequence derived from alignment at A-nodosum_M_contig1151:41607..41774- (Ascophyllum nodosum dioecious)
TTCGTCGAAGTCTTCGGCGCATTTGGTCTGACCATCTCAGAGAGCAAGAC
GGAGACCATGTGCATGCCGATCCCGCGCGCACCGATAGTCTTCAACGCCA
CGGGGCAACAGTACCGTCAGACAACCTCCTTCACCTACTTGGGAGGCACA
GTGACTGAA
back to top