mRNA_A-nodosum_M_contig1148.20.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1148.20.1
Unique NamemRNA_A-nodosum_M_contig1148.20.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1148.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1148contigA-nodosum_M_contig1148:146193..149750 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size550
Hectar predicted targeting categoryother localisation
Exons5
Cds size549
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866551.3003814-CDS-A-nodosum_M_contig1148:146192..1463631680866551.3003814-CDS-A-nodosum_M_contig1148:146192..146363Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1148 146193..146363 +
1680866551.3097444-CDS-A-nodosum_M_contig1148:147213..1473141680866551.3097444-CDS-A-nodosum_M_contig1148:147213..147314Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1148 147214..147314 +
1680866551.3250473-CDS-A-nodosum_M_contig1148:148147..1482291680866551.3250473-CDS-A-nodosum_M_contig1148:148147..148229Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1148 148148..148229 +
1680866551.336037-CDS-A-nodosum_M_contig1148:148712..1487671680866551.336037-CDS-A-nodosum_M_contig1148:148712..148767Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1148 148713..148767 +
1680866551.348903-CDS-A-nodosum_M_contig1148:149609..1497491680866551.348903-CDS-A-nodosum_M_contig1148:149609..149749Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1148 149610..149749 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1148.20.1prot_A-nodosum_M_contig1148.20.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1148 146193..149749 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1148.20.1

>prot_A-nodosum_M_contig1148.20.1 ID=prot_A-nodosum_M_contig1148.20.1|Name=mRNA_A-nodosum_M_contig1148.20.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=183bp
PQQAGPHHTTEQPTLAQGQEAMSSAGVGMAGGGGNPFSIESPGLTAGTEV
ATGAAEQVDRSSVSGSEDRPLGAGKDTRDEFPANAANAAKKSHKSSFKLN
PAAPEWRPASFGRTALMEGVPNGRGFPNGQQRAEPDVAAFASLGADAWGS
TSTGATAVAAAPVRPQAGPQQPQVAPQQAGPHH
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mRNA from alignment at A-nodosum_M_contig1148:146193..149750+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1148.20.1 ID=mRNA_A-nodosum_M_contig1148.20.1|Name=mRNA_A-nodosum_M_contig1148.20.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3558bp|location=Sequence derived from alignment at A-nodosum_M_contig1148:146193..149750+ (Ascophyllum nodosum dioecious)
CCACAACAAGCCGGGCCGCATCACACCACCGAGCAGCCCACCCTTGCCCA
AGGGCAAGAAGCGATGTCCTCCGCGGGGGTCGGGATGGCTGGGGGCGGCG
GCAATCCCTTCAGCATTGAATCGCCCGGGTTGACTGCGGGAACGGAGGTT
GCAACCGGAGCGGCCGAGCAGGTGTGTGTATGTGTTGTGTGTCGTCATCC
CATTTATTCTGGACGTCAGGTTTGTGGACGTACCAGCCGGGGTCACACAG
GATTTCTCCATCTTCCTTCTGTGCTTGCCTTCATTTTTCTCGCGAGAAGG
ATTCAGCCGTTCCATTCCCTCGTCGACCGTGAAGTCGAACTTTGTGTACT
AACGAATTAATCGTTCTCCACTTGTTGGGCATTTGTTTGTTTTTTTGTGA
CGAAAATTCCCACTTCGTGTGACCACACCGAGATTCGAACTCACGTCCCA
ACGTCAGAAGGTTTCGAGGCTACCAACTGAACCACCGGGGCGACCGGCAG
TACAAGCGTGTATCCACCCATCTATTGTCTCGCATGAAATAAGTGTTGCT
GCTCTTGTAGGGTTGGCTATGGAGTCGAGGGACGATGGAGGATCCTCATG
TGTGTGTACATACCCGCCGTGAGCCGTCTCCTTCGGAATCCGCTAGTTTG
TCTGGTCCGCCGCATTTTTAACGCCGTTGGACATTGTGTTTTTGTTTGGG
CAATGACCAAAAACGGGAGCTCCCGATGCTTTTTGGCCAAAAACGGATGT
ACCCTGAAAACAATAGCGGCAAAGAGTGTTGGCCGTATCTGATTGGTCGT
GTCAATCCCGCTTGTGGTCACAAAGAGGTACGAAGGCCAACGGGTCACAT
CATGGTGACAACCCGCTACTCAGACCAACAGGGATCCAAATCGCGACAAA
AAATTGTGCGGCTCTACAAGCAATGGCACCGACCAATATCAAAACAGTCC
ATCAAACCTCCTTACTCGATATCGAGAGTGATCTTGTTGGCATCCTTCTC
CTCCATGTGTCCCCTTCTCAGGTTGACCGTTCGTCGGTTTCCGGCTCCGA
GGACCGGCCACTCGGGGCCGGCAAGGACACGAGGGACGAGTTCCCCGCGA
ACGCCGCCAACGCCGCCAAAAAGTGAGACCCTTGCGAGCTTAGTGGGCGG
GGGAGATGTGTGACACGCCGGTTCTCCCACCGGGGAAAGAGAGGGAGGGG
GAATCAAGGGCAAAGCAATGAGATGAAATGTACTCGCTCGGGAGTATTTG
ATTGCAATGCAAAAACGGCGGCAATATGACATTTCCAAAGTCGCACACAC
ATGCGCGCGCGAGGCGCATTTAATTTCGTCAAACACCACCACCGCACCGC
AGTATTAATAGGCGGAAAACCGCTCTTGCTAGCTAGCTGTCTTGTGATTG
TACTGTGTGCAATACAAACATTGTACTGTGTGCAATACAAACACAAACGG
TTCTCTGATTTTTTTTGAGCACAGATTCCGTTCTACCCGTGAAAACTTCC
TCTCCACGCCTCTCCCTAATGCAACGCCATGCAACGCTATGTAACGCCTC
GACGGTGCAAACCTTAATTTTATCCCGTCGCTGGTACGTCTGGCCGTCGC
TTGTCTGCTACTACAGTAACTCGAGGTGTATATTCGTTCGATAATAGACA
CACGTGGATGACCCGTATCATTGTAAGGAGAAAAGTCTTAACGAAGCTCG
ATCCGTTGACGCTTTATACTATTAATATAAGGATATCTTTGCGCCCTCTA
TACCCCGAAAATTCCCAACATGTTTCACTTGAAAGCGACGCCTATCGATG
TAGATTCAGTATTAGTATTAAGCCCTGCATAGCCTGCGCTCTCTCATCTA
TGACCTTGCTGCAGTGCGACGGTGTGTGCCTCGATGTGCGTCCGACTCCC
CCCGACCGATCGCTACCTTATAACGCTTTTCGCCACTCAAACATGGGTCA
CACAGGTCACACAAGTCATCGTTCAAGCTCAATCCGGCGGCTCCCGAATG
GAGACCCGCCTCATTTGGCCGGACGGCCTTGATGGAGGTACCAAAAGCGC
ATACCGATACCATAGAGCGCCGTAATACTTCTACGAAGTTAATGAAATGA
AAGTACACGGACTTCCTGTTAATAACTACTAtTAATAATATTAATATTAA
TATGGTGAAATCCAGGGCCAGAAACTCCCAACTTGATCGTATTAATATTA
TATATTGATAGAAACTCTGGCGCCCTACTGTATTTTTTATTTTTCTGTTT
TTTCCCCCCGTTTTTTGTTTTTTAAAGAAATGGGGGAGGTAAAGAAATGG
CACATGGCACCGAGCTATTCTAGTCCAGTCTAGTCTAGCCTAGTCTTTAT
GGTATACAGTGGGAAGCGCCTGAGGATTGAGCGCCGCTGGTTTTAAAAGT
TTCCCAGTGCTTATATCGCGTCTACTATTAATACAAAATTAGTGAAGTAT
TAATAGTACATGTCGTTCCTCTGATATCATATTTTGCGCCCTTGCTTGCT
ATGGATGTGTGCCGTGACAGGGTGTTCCAAACGGGCGAGGGTTTCCGAAC
GGACAGCAGCGGGCGGAACCAGACGGTGAGCAAGCACCACCTTCTTGGGG
GGGAAGGTGGAGAAAGCGGGGGCAAATGGAAGGAGGCGTTTTTTCCACTT
CTTGTTTCCCCCTTGTATTCTTCCTTTTCGGTTCCTTCTGTGACGAGGAA
AACGCTGTGTTATCTTTTTGTAGTTCATTGGCAAAAAACTTGAAAAACAA
ACAAACAAAAACATCGGAAGCACCTTGGTTGATGACGTCAGCTTTATTTT
ATCTTACACGTGGATTTTGTATTCGTTTTATTTTGATTCTTGGAATTCTC
ACCCAAGCTAATGTCAAAATCCAGCCCGGTGGTCACAATTTAGAAAAACA
TCACCTCACCTGGATGGAAAACGTACAGTATGAATATAGAAGTCATACTT
TTCTTTCCATACAGAAAGGAAAGGGAACGGTAGTGGACCAGTACATAATG
CTCGGAAAAAGaAAAAAGTGACATCTTCCAAGAAACAAAAAATAAGCAAG
AACAAAAGAGGACGTGGGAAGGCACTATTTAGCTACCATGGTATTTAGCT
GTTTAGCTATTTAGCTATTTAGCTAACTACGTGTGGCTGCCGAGGTGATA
TCAATAGCGTGCATAGCGAAGAACGAATGAACGAATGAACGAATGAACGA
ATGAACGAATGAACGAAGGGCACTATAATATAATAGTTTCTTGTGTGGAG
CAAGATGAGTGCTGTCGTGAAAATCGCTCTTTAAATCAGGGTCCGTGTTA
ACGGCTAATCTTTCGTTAAGGGGTGTCACTTTTCGACGGAGGGAGATGGA
ACAATATTTCATACGACATCCTGCTGTTGCGGCACCGCTCTCTTCCCTTA
TTTCCATGATGGTACAGTAGCAGCCTTCGCATCGCTCGGAGCCGACGCAT
GGGGCAGCACCTCCACAGGCGCAACGGCGGTCGCTGCAGCTCCCGTCCGC
CCGCAGGCCGGACCGCAGCAGCCTCAAGTGGCGCCACAACAAGCCGGGCC
GCATCACG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1148:146193..149750+

>mRNA_A-nodosum_M_contig1148.20.1 ID=mRNA_A-nodosum_M_contig1148.20.1|Name=mRNA_A-nodosum_M_contig1148.20.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=549bp|location=Sequence derived from alignment at A-nodosum_M_contig1148:146193..149750+ (Ascophyllum nodosum dioecious)
CCACAACAAGCCGGGCCGCATCACACCACCGAGCAGCCCACCCTTGCCCA
AGGGCAAGAAGCGATGTCCTCCGCGGGGGTCGGGATGGCTGGGGGCGGCG
GCAATCCCTTCAGCATTGAATCGCCCGGGTTGACTGCGGGAACGGAGGTT
GCAACCGGAGCGGCCGAGCAGGTTGACCGTTCGTCGGTTTCCGGCTCCGA
GGACCGGCCACTCGGGGCCGGCAAGGACACGAGGGACGAGTTCCCCGCGA
ACGCCGCCAACGCCGCCAAAAAGTCACACAAGTCATCGTTCAAGCTCAAT
CCGGCGGCTCCCGAATGGAGACCCGCCTCATTTGGCCGGACGGCCTTGAT
GGAGGGTGTTCCAAACGGGCGAGGGTTTCCGAACGGACAGCAGCGGGCGG
AACCAGACGTAGCAGCCTTCGCATCGCTCGGAGCCGACGCATGGGGCAGC
ACCTCCACAGGCGCAACGGCGGTCGCTGCAGCTCCCGTCCGCCCGCAGGC
CGGACCGCAGCAGCCTCAAGTGGCGCCACAACAAGCCGGGCCGCATCAC
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