mRNA_A-nodosum_M_contig1147.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1147.4.1
Unique NamemRNA_A-nodosum_M_contig1147.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1147.4.1 vs. uniprot
Match: A0A6H5KNI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 5.950e-9
Identity = 52/155 (33.55%), Postives = 72/155 (46.45%), Query Frame = 1 
Query:    1 WYVCTKQLQLVSLELCVTCRKLETSCIVVTTDTPPHLWRRQDVENYARDRG-----HSRLPALRVSAIIW--------KRSGAELLKGSEQLEMTPTELVATSCNDRDRLDAAWSPPSRQQLQRLPLMPE-ALNGVVWPASLLQLTFGAHFNLSI 423
            WYV T +LQLVSLE+C  CR+++T  + V   TPP LW          +R       SR+P ++   + W        +RS  E+  GS       T   A S        A W     Q+L+R+    +  +N   WPASL QL+FG  FN +I
Sbjct:   28 WYVSTLELQLVSLEVCGACRRVQTLHVRVKPQTPPSLWFPSQNHTTTNNRSPKVCISSRVPVVQAFGLTWALPMGVLQQRSATEVRSGSG-CRRANTHSSAASLES-----AVWP----QRLKRMVFESDMTVNTASWPASLQQLSFGCGFNQAI 172
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1147.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KNI6_9PHAE5.950e-933.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1147contigA-nodosum_M_contig1147:156902..157905 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size740
Hectar predicted targeting categoryother localisation
Exons2
Cds size738
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866551.1838398-CDS-A-nodosum_M_contig1147:156903..1569631680866551.1838398-CDS-A-nodosum_M_contig1147:156903..156963Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1147 156904..156963 -
1680866551.1941333-CDS-A-nodosum_M_contig1147:157227..1579051680866551.1941333-CDS-A-nodosum_M_contig1147:157227..157905Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1147 157228..157905 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1147.4.1prot_A-nodosum_M_contig1147.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1147 156904..157905 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1147.4.1

>prot_A-nodosum_M_contig1147.4.1 ID=prot_A-nodosum_M_contig1147.4.1|Name=mRNA_A-nodosum_M_contig1147.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=246bp
WYVCTKQLQLVSLELCVTCRKLETSCIVVTTDTPPHLWRRQDVENYARDR
GHSRLPALRVSAIIWKRSGAELLKGSEQLEMTPTELVATSCNDRDRLDAA
WSPPSRQQLQRLPLMPEALNGVVWPASLLQLTFGAHFNLSIESVAWPGSL
EYLKFGDAFNQPIAQVVWPPVLRQVVLGRDFNMPIESVVWPNSLQHLSFG
YKFNQAVARVVWPTSLLQLTFGAHFNFSTESVVWPVSLKYLEFGDA
back to top

mRNA from alignment at A-nodosum_M_contig1147:156902..157905-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1147.4.1 ID=mRNA_A-nodosum_M_contig1147.4.1|Name=mRNA_A-nodosum_M_contig1147.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1004bp|location=Sequence derived from alignment at A-nodosum_M_contig1147:156902..157905- (Ascophyllum nodosum dioecious)
TGGTATGTGTGTACCAAGCAATTACAGCTCGTGTCTCTGGAGCTCTGCGT
CACCTGCCGTAAGCTTGAGACATCGTGCATCGTTGTAACAACGGACACAC
CACCTCACCTCTGGCGACGGCAAGACGTCGAAAACTACGCAAGAGATCGG
GGGCACTCGCGTTTACCGGCGTTGAGAGTTAGCGCCATCATTTGGAAGAG
GTCGGGTGCCGAGCTACTAAAGGGAAGTGAGCAGCTGGAGATGACACCTA
CGGAACTGGTGGCGACATCATGTAATGATAGGGATCGATTAGACGCGGCG
TGGTCGCCGCCCTCTAGACAACAGCTACAGCGACTACCACTCATGCCCGA
GGCCCTAAACGGCGTCGTGTGGCCGGCCTCGCTCCTGCAACTGACATTTG
GGGCGCATTTCAACCTCTCAATCGAAAGCGTCGCATGGCCAGGCTCACTA
GAGTATTTGAAGTTTGGAGACGCTTTTAATCAGCCCATCGCTCAGGTCGT
GTGGCCACCCGTCTTGCGCCAAGTGGTATTAGGGAGAGACTTCAACATGC
CGATTGAGTCCGTCGTATGGCCAAACTCTTTGCAGCACTTGTCATTCGGG
TATAAGTTTAACCAGGCGGTTGCCAGAGTAGTGTGGCCGACCTCGCTCCT
GCAACTGACATTTGGGGCGCATTTTAACCTCTCAATCGAAAGCGTCGCAT
GGCCAGGCTCACTAGAGTATTTGAAGTTTGGAGACGCTTTTAATCAGCCC
ATCGCTCAGGTCGTGTGGCCACCCGTCTTGCGCCAAGTGGTATTAGGGAG
AGACTTCAACATGCCGATTGAGTCCGTCGTATGGCCAAACTCTTTGCACC
ACTTGTCATTCGGGTATAAGTTTAACCAGGCGGTTGCCAGAGTAGTGTGG
CCGACCTCGCTCCTGCAACTGACATTTGGGGCGCATTTTAACTTCTCAAC
CGAAAGCGTCGTGTGGCCAGTCTCACTAAAGTATTTGGAATTTGGAGATG
CTTT
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1147:156902..157905-

>mRNA_A-nodosum_M_contig1147.4.1 ID=mRNA_A-nodosum_M_contig1147.4.1|Name=mRNA_A-nodosum_M_contig1147.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=738bp|location=Sequence derived from alignment at A-nodosum_M_contig1147:156902..157905- (Ascophyllum nodosum dioecious)
TGGTATGTGTGTACCAAGCAATTACAGCTCGTGTCTCTGGAGCTCTGCGT
CACCTGCCGTAAGCTTGAGACATCGTGCATCGTTGTAACAACGGACACAC
CACCTCACCTCTGGCGACGGCAAGACGTCGAAAACTACGCAAGAGATCGG
GGGCACTCGCGTTTACCGGCGTTGAGAGTTAGCGCCATCATTTGGAAGAG
GTCGGGTGCCGAGCTACTAAAGGGAAGTGAGCAGCTGGAGATGACACCTA
CGGAACTGGTGGCGACATCATGTAATGATAGGGATCGATTAGACGCGGCG
TGGTCGCCGCCCTCTAGACAACAGCTACAGCGACTACCACTCATGCCCGA
GGCCCTAAACGGCGTCGTGTGGCCGGCCTCGCTCCTGCAACTGACATTTG
GGGCGCATTTCAACCTCTCAATCGAAAGCGTCGCATGGCCAGGCTCACTA
GAGTATTTGAAGTTTGGAGACGCTTTTAATCAGCCCATCGCTCAGGTCGT
GTGGCCACCCGTCTTGCGCCAAGTGGTATTAGGGAGAGACTTCAACATGC
CGATTGAGTCCGTCGTATGGCCAAACTCTTTGCAGCACTTGTCATTCGGG
TATAAGTTTAACCAGGCGGTTGCCAGAGTAGTGTGGCCGACCTCGCTCCT
GCAACTGACATTTGGGGCGCATTTTAACTTCTCAACCGAAAGCGTCGTGT
GGCCAGTCTCACTAAAGTATTTGGAATTTGGAGATGCT
back to top