mRNA_A-nodosum_M_contig1145.12.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1145.12.1
Unique NamemRNA_A-nodosum_M_contig1145.12.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1145.12.1 vs. uniprot
Match: A0A6H5JH51_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JH51_9PHAE)

HSP 1 Score: 571 bits (1471), Expect = 9.540e-194
Identity = 311/517 (60.15%), Postives = 385/517 (74.47%), Query Frame = 3 
Query:  249 ELPEIIMFWGRNKRRGGNLVVCPAHS-MDQLIEAYLVCEVVE------QSIKVGKELLAT-RLGALMAVELGEGSPAEQAAIASIISDYSFHDASVGVVSLLASIYYFSYLARNDVNVLTLLAVAVVAGLNQEATWPWVFKLILGCSRIKDPIVRVAQCRRVHHHQGQLSGQAVLAIGLAVFGVYLEVVPTEDGHTPILFRILLNGFQSLMVVVLIINMVQALEPMETSNLLPRDRLRKWAKVFLDDGLYDKVWYLTLIVGLVWAG-VIAAVVTQLSYEDENLEWDVFTTCLVVMALSLCAVNPGMALLSLWGLIWLVPVGLSLVFRSTFDLMTILINRVNVSVRRMMREARCHLRESLKGAFSVRDTLILLLQVLPITPLMLVFIPIPLLCLLAWLLHLCLRCFLRVADLLVLPISNFQIYGLLSDYGAVSWKMSRLTMDVEPSSMRTLLKRKVGMLRKD--GRLGERVETGVLPCTPYAQLNHTSAPRLGCIAVEVDCRNGNRLRTGKEDLDKML 1766
            +LPEII+FWGRN RRGGNL+VCP  S MD+LI+AYLVCEVV+      +S+   +E + T R G LM VELGE S AEQ A+ ++ISDYSFHDAS+G++SL+ASIYYF  LARN VNVLTLLAVAVVAGLNQEATWPWVFK IL C+R+KDPIVRV+QCR V HHQGQLSGQ  LAIGLA FGVYLEV PT DG TP+LFRILLNGFQ+ MV VL++NMVQA+EPM+ S + P+DRLR WA+ +LDD ++D  WYLTL+VG++W+G V   +   +S+E E L + +   CL+V+ LS+ AVNPGMALL  WG IWLVPVGL+ V RS FD   +LIN+V+++ RRM  E   H R+S +G FSVRD L  LLQVLP+TPL LV +PIPLL    W +HL +R  LRVAD L  P  +F+++ +LSDYG+V+WKM RL+MDVE  SMRTLL  ++  L +     LGER  +GV+P  PY  L+ TSA RLGCIAV++         TG+E+  K L
Sbjct:  154 KLPEIILFWGRNMRRGGNLIVCPGESSMDRLIQAYLVCEVVQDSKLFDKSVTSFRERVTTERKGGLMGVELGETSTAEQDALENLISDYSFHDASIGIISLVASIYYFFVLARNHVNVLTLLAVAVVAGLNQEATWPWVFKHILLCARMKDPIVRVSQCRLVRHHQGQLSGQGFLAIGLAAFGVYLEVFPTTDGDTPLLFRILLNGFQAAMVAVLVVNMVQAVEPMDMSRVSPKDRLRPWARKYLDDNVFDTKWYLTLLVGVLWSGGVTVTIFVGVSHEFEGLGYTIPVICLIVLGLSIAAVNPGMALLGAWGFIWLVPVGLAFVCRSAFDTALMLINKVSLTWRRMANEVVSHARDSARGEFSVRDILKFLLQVLPLTPLFLVSLPIPLLYFFVWFIHLSMRVLLRVADALSAPALDFRLHPILSDYGSVTWKMDRLSMDVENRSMRTLLMARIDKLMESTSATLGERSRSGVIPSRPYWHLSKTSANRLGCIAVKIG--------TGEEENSKTL 662
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1145.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JH51_9PHAE9.540e-19460.15Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1145contigA-nodosum_M_contig1145:59296..62344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1947
Hectar predicted targeting categoryother localisation
Exons3
Cds size1599
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866550.4262657-UTR-A-nodosum_M_contig1145:59295..595611680866550.4262657-UTR-A-nodosum_M_contig1145:59295..59561Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1145 59296..59561 +
1680866550.4756699-UTR-A-nodosum_M_contig1145:62262..623441680866550.4756699-UTR-A-nodosum_M_contig1145:62262..62344Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1145 62263..62344 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866550.435258-CDS-A-nodosum_M_contig1145:59561..596831680866550.435258-CDS-A-nodosum_M_contig1145:59561..59683Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1145 59562..59683 +
1680866550.4470627-CDS-A-nodosum_M_contig1145:60332..605671680866550.4470627-CDS-A-nodosum_M_contig1145:60332..60567Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1145 60333..60567 +
1680866550.461267-CDS-A-nodosum_M_contig1145:61020..622621680866550.461267-CDS-A-nodosum_M_contig1145:61020..62262Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1145 61021..62262 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1145.12.1prot_A-nodosum_M_contig1145.12.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1145 59562..62262 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1145.12.1

>prot_A-nodosum_M_contig1145.12.1 ID=prot_A-nodosum_M_contig1145.12.1|Name=mRNA_A-nodosum_M_contig1145.12.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=533bp
MFWGRNKRRGGNLVVCPAHSMDQLIEAYLVCEVVEQSIKVGKELLATRLG
ALMAVELGEGSPAEQAAIASIISDYSFHDASVGVVSLLASIYYFSYLARN
DVNVLTLLAVAVVAGLNQEATWPWVFKLILGCSRIKDPIVRVAQCRRVHH
HQGQLSGQAVLAIGLAVFGVYLEVVPTEDGHTPILFRILLNGFQSLMVVV
LIINMVQALEPMETSNLLPRDRLRKWAKVFLDDGLYDKVWYLTLIVGLVW
AGVIAAVVTQLSYEDENLEWDVFTTCLVVMALSLCAVNPGMALLSLWGLI
WLVPVGLSLVFRSTFDLMTILINRVNVSVRRMMREARCHLRESLKGAFSV
RDTLILLLQVLPITPLMLVFIPIPLLCLLAWLLHLCLRCFLRVADLLVLP
ISNFQIYGLLSDYGAVSWKMSRLTMDVEPSSMRTLLKRKVGMLRKDGRLG
ERVETGVLPCTPYAQLNHTSAPRLGCIAVEVDCRNGNRLRTGKEDLDKML
KERAEVEEDAEVVAEPDRDASQRVAPSTDSKV*
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mRNA from alignment at A-nodosum_M_contig1145:59296..62344+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1145.12.1 ID=mRNA_A-nodosum_M_contig1145.12.1|Name=mRNA_A-nodosum_M_contig1145.12.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3049bp|location=Sequence derived from alignment at A-nodosum_M_contig1145:59296..62344+ (Ascophyllum nodosum dioecious)
AGGACAATAACAGCTACTCCCTGCGACAGAAGGCCGTCGTCCTGAAGCGA
GCTGCCGCAGCGGCGGACAGTCCCCCCGAAGAACCCGCCGCCCTGGCAGA
AAACACGCCTTCTTTAGCGACGGCCGAAGCCCCCGCCGTCTCTCCTGGCG
ATAGCCACCTGGCCGAGCTGCCTCTGTCCGCGACTGCGCAGGCACCGGCG
TCGGCTGGAGGGAGTGCCCGGGAGGCTGGGGACGGGATCGGGCGGCGTGA
ACTCCCCGAGATCATAATGTTCTGGGGCAGGAACAAGCGTCGCGGCGGGA
ACCTGGTGGTGTGTCCCGCGCACTCCATGGACCAACTCATCGAGGCGTAC
CTCGTGTGCGAGGTGGTGGAGCAAAGCATCAAAGTCGGGTGGGTCAGAGA
CGGGGGAGGGGGATGTTCGCTCGGCGTTTCCGTACGGTGCCGTCGTTGGA
GCACCGGATTCGTGGCGGCGCGCGGGGTGCACCCTGGTTCGATCTCGCTC
TGATGTTGCGCGGGGGCCTGCGGCTCGAGCAGCGGAGGCTTTTGAAAGTG
TATGCTGTGCCCGTCTGGAGATGAAGGAATGCGTGCATCGCGTTTTTTTT
TTTTCCGGCCTTTCGCGAACACCGCACGCCACCGCTCCGCATTGCGTACC
GTAGATTCGACAGCACGCATGAGGCACGAAATTCCCAAGAAGGGTGCGAC
AGAGAGTGAGCGGAGAAACCGCGATTTTTATCCCCTCTCCCCCCTAAGAC
AAACCAAAAGCAAATAGCGCCTTTCTCAACTCAAAACCTCATATTTCAAT
AAAGTGAATCACAAAAACACGCACACATGGCCACGCGCGCACTCTCAGCT
TAGGGCTTCTGGCGACGCGCTTGGGGGCGCTTATGGACTTATGGCGGTTG
AGCTCCCCCGCCCCCCCCCCCCAAATTAATATATAAATAAATAACGCTCT
CTTTTCAACTCAAAACATTGTATTTCAATTAATAATGCACCACACACACA
CATACACATACACACACGGGCACGCGCGCACTATCAGGAAAGAGCTTCTT
GCGACGCGCTTGGGGGCGCTTATGGCGGTTGAGCTTGGCGAGGGCAGCCC
CGCCGAGCAGGCCGCGATCGCAAGCATCATCTCGGACTACAGCTTCCACG
ACGCGTCCGTGGGCGTCGTGTCGCTCCTGGCGAGCATCTACTACTTCAGC
TACCTGGCGAGGAACGACGTGAACGTGCTGACGCTGCTCGCGGTGGCTGT
GGTGGCGGGGCTCAATCAGGAGGTGAGGTGGGCTGCGTTTGTGCGAACTT
TCCGTTTTTCGAGAGCAGCACTGCAACCTCTTAAGTGTGAGTTTTGCACG
ATTTGGGTTCATTGTATATATTTGTACTGTGTTTGGGGAGCCGGCGTCGG
GGAAAGGGGTGACGTGCTCGCTCCGTCCCTCCAGCTGCTAGCCCAGTCCA
GTCCAGTCCAGTCCAATCGAGCCCCGTCTGGATTTTTTTTTGTGGGGGTT
ACACGAGATTATGCTGCGGTTGGCAGGAGGGGTTTGTGGGGCGGGGGGCG
TGTGAAACTTGAAACGGCGGAATGGAGGTAAATTGTTCATAGTGTTGTTG
TATTAATGTCGTCCTCACCTCCAGTCAAATCCCGACCTCGTTTTTGTTTT
ATTTTTGGTGGGGAATTCGTTGTTTTGTTTGTTGCGTACTGTTTTTTCCA
TCGCCTGCTTCTCCCTCCCTCTTAGGCTACCTGGCCATGGGTGTTCAAGC
TCATCCTCGGGTGCTCTCGCATCAAGGATCCCATCGTGAGGGTCGCACAG
TGCCGTCGCGTGCACCACCACCAGGGCCAGCTCTCCGGTCAGGCGGTCCT
CGCGATCGGGCTGGCAGTCTTTGGCGTGTACCTCGAGGTGGTGCCTACTG
AGGACGGACACACTCCGATCCTGTTCCGTATTCTCCTGAACGGTTTCCAG
AGCTTGATGGTGGTGGTGCTGATCATCAACATGGTCCAGGCTTTGGAGCC
GATGGAAACTTCCAACCTTCTGCCGCGCGACCGCCTCAGGAAATGGGCTA
AGGTCTTCCTCGATGACGGCTTGTACGACAAGGTGTGGTACCTGACCCTC
ATCGTGGGCCTCGTCTGGGCGGGGGTGATCGCCGCGGTGGTGACCCAGCT
GTCGTACGAAGATGAAAACCTAGAGTGGGACGTGTTCACCACGTGCCTGG
TGGTGATGGCCCTCAGCCTGTGCGCCGTGAACCCGGGCATGGCGCTGCTG
AGTCTGTGGGGACTTATCTGGCTGGTCCCCGTGGGACTCTCCCTCGTATT
CCGCTCTACGTTTGACTTGATGACGATACTCATCAACCGGGTGAACGTGT
CGGTGCGTCGCATGATGAGGGAGGCCCGGTGCCATCTGCGCGAGAGCTTA
AAGGGGGCGTTCAGCGTCCGGGACACGCTGATCCTGCTGCTCCAGGTGCT
TCCGATAACCCCGCTGATGCTGGTGTTCATCCCCATCCCCTTGCTATGCC
TACTGGCGTGGCTACTCCATCTTTGCCTCCGGTGTTTCCTCAGAGTGGCC
GACCTCCTTGTGCTCCCCATCAGCAACTTCCAGATATACGGTCTCCTCAG
CGACTACGGCGCCGTGAGCTGGAAGATGTCGCGGCTCACGATGGATGTCG
AGCCGAGCAGCATGCGGACCCTCCTGAAGCGGAAGGTGGGGATGCTCCGG
AAGGACGGGAGGCTTGGGGAGCGGGTCGAAACCGGTGTTCTCCCGTGCAC
GCCGTACGCGCAACTCAACCACACCTCGGCACCCAGGCTCGGGTGTATTG
CCGTCGAGGTGGACTGTCGAAACGGAAACCGATTGAGGACGGGGAAGGAA
GATCTGGACAAGATGCTGAAGGAGAGGGCGGAGGTCGAGGAAGACGCCGA
AGTTGTCGCCGAACCCGACCGTGACGCCTCGCAGCGCGTTGCCCCCTCAA
CGGACAGTAAGGTTTAATCTAAGGCTTGACTGAACATCACGCAGTCTGCG
TGCGTATCTTTTTGTTTGCAGCGCTTTGTACGTGGGGCATGCGTCTGTA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1145:59296..62344+

>mRNA_A-nodosum_M_contig1145.12.1 ID=mRNA_A-nodosum_M_contig1145.12.1|Name=mRNA_A-nodosum_M_contig1145.12.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1599bp|location=Sequence derived from alignment at A-nodosum_M_contig1145:59296..62344+ (Ascophyllum nodosum dioecious)
ATGTTCTGGGGCAGGAACAAGCGTCGCGGCGGGAACCTGGTGGTGTGTCC
CGCGCACTCCATGGACCAACTCATCGAGGCGTACCTCGTGTGCGAGGTGG
TGGAGCAAAGCATCAAAGTCGGGAAAGAGCTTCTTGCGACGCGCTTGGGG
GCGCTTATGGCGGTTGAGCTTGGCGAGGGCAGCCCCGCCGAGCAGGCCGC
GATCGCAAGCATCATCTCGGACTACAGCTTCCACGACGCGTCCGTGGGCG
TCGTGTCGCTCCTGGCGAGCATCTACTACTTCAGCTACCTGGCGAGGAAC
GACGTGAACGTGCTGACGCTGCTCGCGGTGGCTGTGGTGGCGGGGCTCAA
TCAGGAGGCTACCTGGCCATGGGTGTTCAAGCTCATCCTCGGGTGCTCTC
GCATCAAGGATCCCATCGTGAGGGTCGCACAGTGCCGTCGCGTGCACCAC
CACCAGGGCCAGCTCTCCGGTCAGGCGGTCCTCGCGATCGGGCTGGCAGT
CTTTGGCGTGTACCTCGAGGTGGTGCCTACTGAGGACGGACACACTCCGA
TCCTGTTCCGTATTCTCCTGAACGGTTTCCAGAGCTTGATGGTGGTGGTG
CTGATCATCAACATGGTCCAGGCTTTGGAGCCGATGGAAACTTCCAACCT
TCTGCCGCGCGACCGCCTCAGGAAATGGGCTAAGGTCTTCCTCGATGACG
GCTTGTACGACAAGGTGTGGTACCTGACCCTCATCGTGGGCCTCGTCTGG
GCGGGGGTGATCGCCGCGGTGGTGACCCAGCTGTCGTACGAAGATGAAAA
CCTAGAGTGGGACGTGTTCACCACGTGCCTGGTGGTGATGGCCCTCAGCC
TGTGCGCCGTGAACCCGGGCATGGCGCTGCTGAGTCTGTGGGGACTTATC
TGGCTGGTCCCCGTGGGACTCTCCCTCGTATTCCGCTCTACGTTTGACTT
GATGACGATACTCATCAACCGGGTGAACGTGTCGGTGCGTCGCATGATGA
GGGAGGCCCGGTGCCATCTGCGCGAGAGCTTAAAGGGGGCGTTCAGCGTC
CGGGACACGCTGATCCTGCTGCTCCAGGTGCTTCCGATAACCCCGCTGAT
GCTGGTGTTCATCCCCATCCCCTTGCTATGCCTACTGGCGTGGCTACTCC
ATCTTTGCCTCCGGTGTTTCCTCAGAGTGGCCGACCTCCTTGTGCTCCCC
ATCAGCAACTTCCAGATATACGGTCTCCTCAGCGACTACGGCGCCGTGAG
CTGGAAGATGTCGCGGCTCACGATGGATGTCGAGCCGAGCAGCATGCGGA
CCCTCCTGAAGCGGAAGGTGGGGATGCTCCGGAAGGACGGGAGGCTTGGG
GAGCGGGTCGAAACCGGTGTTCTCCCGTGCACGCCGTACGCGCAACTCAA
CCACACCTCGGCACCCAGGCTCGGGTGTATTGCCGTCGAGGTGGACTGTC
GAAACGGAAACCGATTGAGGACGGGGAAGGAAGATCTGGACAAGATGCTG
AAGGAGAGGGCGGAGGTCGAGGAAGACGCCGAAGTTGTCGCCGAACCCGA
CCGTGACGCCTCGCAGCGCGTTGCCCCCTCAACGGACAGTAAGGTTTAA
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