prot_A-nodosum_M_contig1144.9.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1144.9.1
Unique Nameprot_A-nodosum_M_contig1144.9.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length175
Homology
BLAST of mRNA_A-nodosum_M_contig1144.9.1 vs. uniprot
Match: A0A6H5KA78_9PHAE (TRASH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA78_9PHAE)

HSP 1 Score: 294 bits (753), Expect = 5.040e-100
Identity = 155/174 (89.08%), Postives = 163/174 (93.68%), Query Frame = 0
Query:    1 MVRIEVCYFCSSKIYPGHGIVFVRNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMAVDTTFDFEKRRNRPVKYDRETMGKTLLAMKKVKEVQAKREQRFFENRHRGAKTKEKAKIKADIKENIELLAPAATQDREKTLTTITDKAKQQKASAAASKARVTMETED 174
            MVRIE+CYFCSS+IYPGHGIVF RNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEM+VDTTFDFEKRRNRPVKYDRE MGKTLLAMKKVKEVQAKRE+RFFENRH+GA  KEKA IKA+IK+NIELLAPAA  DREKTLT I+DKAKQ KASAAASKAR  METED
Sbjct:    1 MVRIEICYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKAAIKAEIKDNIELLAPAAAVDREKTLTAISDKAKQ-KASAAASKARTLMETED 173          
BLAST of mRNA_A-nodosum_M_contig1144.9.1 vs. uniprot
Match: A0A835Z8F8_9STRA (RL30, ribosomal protein 30 60S large ribosomal subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8F8_9STRA)

HSP 1 Score: 226 bits (577), Expect = 4.190e-73
Identity = 113/167 (67.66%), Postives = 140/167 (83.83%), Query Frame = 0
Query:    1 MVRIEVCYFCSSKIYPGHGIVFVRNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMAVDTTFDFEKRRNRPVKYDRETMGKTLLAMKKVKEVQAKREQRFFENRHRGAKTKEKAKIKADIKENIELLAPAATQDREKTLTTITDKAKQQKASAAASKAR 167
            MVR+EVCYFCS  +YPGHG+ FVRND+KVF+FCRSKCHKNF +KRNPRK KWTKA+R+AAGKEM VDTTFDFEKRRNRPVKYDRE MGKTLLAMKKV EVQA+RE+RFF+ RH+    +EKA I+ ++++NIELL PAA  DREK L  + +  +Q+++  A ++A+
Sbjct:    1 MVRVEVCYFCSGPMYPGHGVQFVRNDAKVFKFCRSKCHKNFIKKRNPRKMKWTKAYRKAAGKEMTVDTTFDFEKRRNRPVKYDRELMGKTLLAMKKVTEVQAQREKRFFDVRHKDKAAREKAAIRTEVEQNIELLVPAAA-DREKALANVKEVIRQKESKNALTRAK 166          
BLAST of mRNA_A-nodosum_M_contig1144.9.1 vs. uniprot
Match: A0A4D9CSX3_9STRA (TRASH domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CSX3_9STRA)

HSP 1 Score: 203 bits (516), Expect = 9.580e-64
Identity = 98/154 (63.64%), Postives = 126/154 (81.82%), Query Frame = 0
Query:    2 VRIEVCYFCSSKIYPGHGIVFVRNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMAVDTTFDFEKRRNRPVKYDRETMGKTLLAMKKVKEVQAKREQRFFENRHRGAKTKEKAKIKADIKENIELLAPAATQDREKTLTTITDKAK 155
            +RI  CYFCS  +YPGHG  FVRND+KVF FCRSKCH+NF +KRNPRK++WTKA+R+AAGKEM VD TFDFEKRRNRPVKYDR+ +GKT+ AM+K++ +Q++RE+ F++ R R AK KEKA ++ ++KEN+ELLAPAA   REK L  + +K K
Sbjct:    1 MRILKCYFCSGPMYPGHGTTFVRNDAKVFNFCRSKCHRNFNKKRNPRKARWTKAYRKAAGKEMVVDATFDFEKRRNRPVKYDRDLVGKTVQAMQKIRTIQSRREEVFYQTRMREAKMKEKAALQVEVKENVELLAPAAA-SREKVLLNVREKVK 153          
BLAST of mRNA_A-nodosum_M_contig1144.9.1 vs. uniprot
Match: D7FZ76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ76_ECTSI)

HSP 1 Score: 201 bits (511), Expect = 1.020e-63
Identity = 118/174 (67.82%), Postives = 125/174 (71.84%), Query Frame = 0
Query:    1 MVRIEVCYFCSSKIYPGHGIVFVRNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMAVDTTFDFEKRRNRPVKYDRETMGKTLLAMKKVKEVQAKREQRFFENRHRGAKTKEKAKIKADIKENIELLAPAATQDREKTLTTITDKAKQQKASAAASKARVTMETED 174
            MVRIE+CYFCSS+IYPGHGIVF RNDSK                                      DTTFDFEKRRNRPVKYDRE MGKTLLAMKKVKEVQAKRE+RFFENRH+GA  KEKA IKA+IK+NIELLAPAA  DREKTLT I+DKAKQ KASAAASKAR  METED
Sbjct:    1 MVRIEICYFCSSRIYPGHGIVFARNDSK--------------------------------------DTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKAAIKAEIKDNIELLAPAAAVDREKTLTAISDKAKQ-KASAAASKARALMETED 135          
BLAST of mRNA_A-nodosum_M_contig1144.9.1 vs. uniprot
Match: A0A448YUA5_9STRA (TRASH domain-containing protein n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448YUA5_9STRA)

HSP 1 Score: 202 bits (513), Expect = 1.860e-63
Identity = 99/155 (63.87%), Postives = 127/155 (81.94%), Query Frame = 0
Query:    2 VRIEVCYFCSSKIYPGHGIVFVRNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMAVDTTFDFEKRRNRPVKYDRETMGKTLLAMKKVKEVQAKREQRFFENRHRGAKTKEKAKIKADIKENIELLAPAATQDREKTLTTITDKAKQ 156
            +RIE CYFCSS  YPGHGI FVRNDSK FRFCRSKCH+NF +KRNPRK  WTKA+R+  GKEMAVD+TFDFEKRRNRPVKYDR+ MGKT+LAM++V+ ++  REQRFF+NR + +K ++K + + +I+++IELLAPA   +RE+ +  + D AKQ
Sbjct:    1 MRIEKCYFCSSPCYPGHGITFVRNDSKQFRFCRSKCHRNFNKKRNPRKVAWTKAYRKTRGKEMAVDSTFDFEKRRNRPVKYDRDLMGKTILAMRRVESIKKAREQRFFDNRVKDSKAEKKQQARVEIEKSIELLAPAVA-NREQVMRNVIDSAKQ 154          
BLAST of mRNA_A-nodosum_M_contig1144.9.1 vs. uniprot
Match: A0A6U3SB39_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SB39_9STRA)

HSP 1 Score: 201 bits (512), Expect = 3.300e-63
Identity = 99/159 (62.26%), Postives = 131/159 (82.39%), Query Frame = 0
Query:    2 VRIEVCYFCSSKIYPGHGIVFVRNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMAVDTTFDFEKRRNRPVKYDRETMGKTLLAMKKVKEVQAKREQRFFENRHRGAKTKEKAKIKADIKENIELLAPAATQDREKTLTTITDKAKQQKAS 160
            +RIE CYFCSS  YPGHG+VFVRNDSK FRFCRSKCH+NF +KRNPRK  WTKA+R+  GKE+A+D+TF+FEKRRNRPVKYDR  MGKT+LAM++V+ ++ KRE+RFF NR + AK ++KA+ + +I++ IELLAPA   +RE+ +  + DKA+++ AS
Sbjct:    1 MRIEKCYFCSSPCYPGHGMVFVRNDSKQFRFCRSKCHRNFNKKRNPRKVAWTKAYRKTRGKELAIDSTFEFEKRRNRPVKYDRNLMGKTILAMQRVQAIKEKREERFFANRMKDAKKEQKAQARVEIEKGIELLAPAVA-NREEVMRNVVDKARERIAS 158          
BLAST of mRNA_A-nodosum_M_contig1144.9.1 vs. uniprot
Match: W7T7Z2_9STRA (Ribosome biogenesis protein rlp24 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T7Z2_9STRA)

HSP 1 Score: 203 bits (517), Expect = 7.350e-63
Identity = 98/155 (63.23%), Postives = 127/155 (81.94%), Query Frame = 0
Query:    2 VRIEVCYFCSSKIYPGHGIVFVRNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMAVDTTFDFEKRRNRPVKYDRETMGKTLLAMKKVKEVQAKREQRFFENRHRGAKTKEKAKIKADIKENIELLAPAATQDREKTLTTITDKAKQ 156
            +RI  CYFCS  +YPGHG  FVRND+KVF FCRSKCH+NF +KRNPRK++WTKA+R+AAGKEM VD TFDFEKRRNRPVKYDR+ +GKT+ AM+K++ +Q++RE+ F++ R R AK KEKA ++ ++KEN+ELLAPAA   REK L  + +K K+
Sbjct:   77 MRILKCYFCSGPMYPGHGTTFVRNDAKVFNFCRSKCHRNFNKKRNPRKTRWTKAYRKAAGKEMVVDATFDFEKRRNRPVKYDRDLVGKTVQAMQKIRTIQSRREEVFYQTRMREAKMKEKAALQVEVKENVELLAPAAA-SREKALLNVREKVKE 230          
BLAST of mRNA_A-nodosum_M_contig1144.9.1 vs. uniprot
Match: A0A1E7FH63_9STRA (60S ribosomal protein L24 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FH63_9STRA)

HSP 1 Score: 200 bits (509), Expect = 1.010e-62
Identity = 99/154 (64.29%), Postives = 125/154 (81.17%), Query Frame = 0
Query:    2 VRIEVCYFCSSKIYPGHGIVFVRNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMAVDTTFDFEKRRNRPVKYDRETMGKTLLAMKKVKEVQAKREQRFFENRHRGAKTKEKAKIKADIKENIELLAPAATQDREKTLTTITDKAK 155
            +RIE CYFCSS  YPGHG+ FVRNDSK FRFCRSKCH+NF +KRNPRK  WTKA+R+  GKEMAVD+TFDFEKRRNRPVKYDR+ MGKT+LAMK+V+ ++  RE+RFFENR   AK ++K + + +I+++IELLAPA   +RE+ +  + D AK
Sbjct:    1 MRIEKCYFCSSPCYPGHGMTFVRNDSKQFRFCRSKCHRNFNKKRNPRKVAWTKAYRKTRGKEMAVDSTFDFEKRRNRPVKYDRDLMGKTILAMKRVETIKKAREERFFENRMSDAKAEKKKQARVEIEKSIELLAPAVA-NREQVMRNVIDSAK 153          
BLAST of mRNA_A-nodosum_M_contig1144.9.1 vs. uniprot
Match: A0A7S2DM88_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DM88_9STRA)

HSP 1 Score: 199 bits (507), Expect = 1.620e-62
Identity = 105/167 (62.87%), Postives = 129/167 (77.25%), Query Frame = 0
Query:    1 MVRIEVCYFCSSKIYPGHGIVFVRNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMAVDTTFDFEKRRNRPVKYDRETMGKTLLAMKKVKEVQAKREQRFFENRHRGAKTKEKAKIKADIKENIELLAPAATQDREKTLTTITD----KAKQQKASAAA 163
            MVR+E CYFCS  +YPGHGI FVRND+KVF+FCRSKCHKNF RKRNPRK+ WTKAFRRA  KEM VD+T DFEKRRNRPVKYDRE +G TL AM++VKE+  +RE+ F+  R + +KT ++   K ++KEN+E+LAPAA Q +EK L  I D    KA  Q+ +AAA
Sbjct:    8 MVRVETCYFCSGPLYPGHGIQFVRNDAKVFKFCRSKCHKNFIRKRNPRKTAWTKAFRRARKKEMTVDSTLDFEKRRNRPVKYDRELVGTTLRAMQRVKEIHTRREEIFYAKRMKESKTIQRQAAKVELKENMEILAPAAAQ-KEKVLLNIADHARVKAAAQRRTAAA 173          
BLAST of mRNA_A-nodosum_M_contig1144.9.1 vs. uniprot
Match: A0A7S0PX55_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0PX55_9STRA)

HSP 1 Score: 196 bits (498), Expect = 4.150e-61
Identity = 93/154 (60.39%), Postives = 125/154 (81.17%), Query Frame = 0
Query:    2 VRIEVCYFCSSKIYPGHGIVFVRNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMAVDTTFDFEKRRNRPVKYDRETMGKTLLAMKKVKEVQAKREQRFFENRHRGAKTKEKAKIKADIKENIELLAPAATQDREKTLTTITDKAK 155
            +R+E CYFCSS  YPGHG++FVRNDSK FRFCRSKCH+NF +KRNPRK  WTKA+R+  GKEMA+D+TF+FEKRRNRPVKYDR+ MGKT+LAM++V+ ++  RE+RFF NR + AK ++K + + +I+++IELLAPA    RE+ +  + D A+
Sbjct:    1 MRVEKCYFCSSPCYPGHGMMFVRNDSKTFRFCRSKCHRNFNKKRNPRKVAWTKAYRKTRGKEMAIDSTFEFEKRRNRPVKYDRDLMGKTILAMQRVQNIKENREERFFANRMKDAKAEKKQQARVEIEKSIELLAPAVA-SREQVMKNVVDSAR 153          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1144.9.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KA78_9PHAE5.040e-10089.08TRASH domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835Z8F8_9STRA4.190e-7367.66RL30, ribosomal protein 30 60S large ribosomal sub... [more]
A0A4D9CSX3_9STRA9.580e-6463.64TRASH domain-containing protein n=2 Tax=Monodopsid... [more]
D7FZ76_ECTSI1.020e-6367.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A448YUA5_9STRA1.860e-6363.87TRASH domain-containing protein n=2 Tax=Pseudo-nit... [more]
A0A6U3SB39_9STRA3.300e-6362.26Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
W7T7Z2_9STRA7.350e-6363.23Ribosome biogenesis protein rlp24 n=1 Tax=Nannochl... [more]
A0A1E7FH63_9STRA1.010e-6264.2960S ribosomal protein L24 n=1 Tax=Fragilariopsis c... [more]
A0A7S2DM88_9STRA1.620e-6262.87Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S0PX55_9STRA4.150e-6160.39Hypothetical protein n=1 Tax=Asterionellopsis glac... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011017TRASH domainSMARTSM007464TRASHcoord: 7..45
e-value: 3.1E-11
score: 53.3
IPR000988Ribosomal protein L24e-relatedPFAMPF01246Ribosomal_L24ecoord: 3..66
e-value: 1.5E-32
score: 111.6
IPR000988Ribosomal protein L24e-relatedPANTHERPTHR1079260S RIBOSOMAL PROTEIN L24coord: 3..138
IPR000988Ribosomal protein L24e-relatedCDDcd00472Ribosomal_L24e_L24coord: 2..55
e-value: 2.28152E-28
score: 98.0282
IPR038630Ribosomal protein L24e/L24 superfamilyGENE3D2.30.170.20Ribosomal protein L24ecoord: 2..68
e-value: 2.0E-32
score: 113.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 151..174
NoneNo IPR availablePANTHERPTHR10792:SF8RIBOSOME BIOGENESIS PROTEIN RLP24-RELATEDcoord: 3..138
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 5..57
IPR023442Ribosomal protein L24e, conserved sitePROSITEPS01073RIBOSOMAL_L24Ecoord: 9..26

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1144contigA-nodosum_M_contig1144:104494..116090 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1144.9.1mRNA_A-nodosum_M_contig1144.9.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1144 104445..116090 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1144.9.1 ID=prot_A-nodosum_M_contig1144.9.1|Name=mRNA_A-nodosum_M_contig1144.9.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=175bp
MVRIEVCYFCSSKIYPGHGIVFVRNDSKVFRFCRSKCHKNFTRKRNPRKS
KWTKAFRRAAGKEMAVDTTFDFEKRRNRPVKYDRETMGKTLLAMKKVKEV
QAKREQRFFENRHRGAKTKEKAKIKADIKENIELLAPAATQDREKTLTTI
TDKAKQQKASAAASKARVTMETED*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011017TRASH_dom
IPR000988Ribosomal_L24e-rel
IPR038630L24e/L24_sf
IPR023442Ribosomal_L24e_CS