mRNA_A-nodosum_M_contig1005.11.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1005.11.1
Unique NamemRNA_A-nodosum_M_contig1005.11.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1005.11.1 vs. uniprot
Match: D8LMY3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMY3_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 2.360e-22
Identity = 55/85 (64.71%), Postives = 75/85 (88.24%), Query Frame = 2 
Query:  344 QEMADRLSELEGLAGARSDSGTLLREHQEEMLVKMREIRQALASESGELESVKAANEEMAKLRELIKRKDYRILHLTRALDAAST 598
            +EM ++LS+LEGLAG  +D  TLL++HQ+EML K+REIR A+A+E+GEL+SVK AN E+AKLRE+IKR+DYRILHL+RAL+A ++
Sbjct:    6 KEMTEQLSKLEGLAGG-NDGHTLLQQHQKEMLAKLREIRAAMATETGELDSVKEANAEVAKLREVIKRRDYRILHLSRALEAGAS 89
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1005.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMY3_ECTSI2.360e-2264.71Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1005contigA-nodosum_M_contig1005:90771..98594 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1455
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_004110.1
Cds size294
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1005.11.1prot_A-nodosum_M_contig1005.11.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1005 94588..97740 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866361.1918743-UTR-A-nodosum_M_contig1005:90770..907961680866361.1918743-UTR-A-nodosum_M_contig1005:90770..90796Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1005 90771..90796 +
1680866361.2025666-UTR-A-nodosum_M_contig1005:91091..911441680866361.2025666-UTR-A-nodosum_M_contig1005:91091..91144Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1005 91092..91144 +
1680866361.7986708-UTR-A-nodosum_M_contig1005:94359..945871680866361.7986708-UTR-A-nodosum_M_contig1005:94359..94587Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1005 94360..94587 +
1680866361.8458786-UTR-A-nodosum_M_contig1005:97740..985941680866361.8458786-UTR-A-nodosum_M_contig1005:97740..98594Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1005 97741..98594 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866361.8103828-CDS-A-nodosum_M_contig1005:94587..946261680866361.8103828-CDS-A-nodosum_M_contig1005:94587..94626Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1005 94588..94626 +
1680866361.8236663-CDS-A-nodosum_M_contig1005:96943..969831680866361.8236663-CDS-A-nodosum_M_contig1005:96943..96983Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1005 96944..96983 +
1680866361.83405-CDS-A-nodosum_M_contig1005:97525..977401680866361.83405-CDS-A-nodosum_M_contig1005:97525..97740Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1005 97526..97740 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1005.11.1

>prot_A-nodosum_M_contig1005.11.1 ID=prot_A-nodosum_M_contig1005.11.1|Name=mRNA_A-nodosum_M_contig1005.11.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=98bp
MARNSTEGGAWWQEMADRLSELEGLAGARSDSGTLLREHQEEMLVKMREI
RQALASESGELESVKAANEEMAKLRELIKRKDYRILHLTRALDAAST*
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mRNA from alignment at A-nodosum_M_contig1005:90771..98594+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1005.11.1 ID=mRNA_A-nodosum_M_contig1005.11.1|Name=mRNA_A-nodosum_M_contig1005.11.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=7824bp|location=Sequence derived from alignment at A-nodosum_M_contig1005:90771..98594+ (Ascophyllum nodosum dioecious)
AAACCTTAGATAAAGGAGACCGACGGGTGAGAAGGGAAGGGGCACAAGCA
AAAGAAAGTTCGGAATCGCCTACGAACATAGTGGGTGTTTTTCGCTCCTT
CGATATGAAAAGTTCCAATTCCACGTTTGACTGACCTCGCGGAGAGCGTG
AAACACAAAAGGAAATGCAAAGTACATTGTACTTCTTTTTACGAGTCCTA
CTTGTACGTCGTCGCGAGACTGTCAGACGCAAATAGTCTAAATTTCCCCT
GACCTGAGACAGAGCCGAGAAAGATGCTTTCCACCTCACTACAATCCCCC
CATTTGGCGTCTTCCCGGTAGCGCGACTGGCTGGAGGTGCGAAGCAATCA
GAGGCTATGGACCCCAGAATCAAAGTGAGTATATCGAAGTATGTCATACA
TCGCGCCCTCACTGGGGTGGGGGTAGCAAGCACGATCTCACGATCTCCGT
AATATGTACCTGGTATAGTCTATGCTTTCGTCCCGAGGACGAATACATCA
ACAGCCAATCGTACTTTGTGAGACAATATTCCCTGACCAGGCTAATGATG
GCATGACTCCGGGTGACGGCACAAAGAGGTCATAGACTTCGCACTCGTCT
TTTCCCTTTGCCTTTTTCCGCGTAGTTCTGAAATCTTTATCATCTGTAAC
GTCCCCGGACGGATGGATCGTCGTCAAACCTCACGTTTTTGAGACGTGTT
TATGGTCTAACACTAATTTTGTGCTTGTAAACGTGTTTTCACATTCACCT
ATCGGGCCTCAACTATACTATTACCCAGTAATACAGTACCTGGTATACGC
TATGGTTGCCAATCCGGTACGTGGTCTTCTGGGCGAGAAAAGATCAGAGG
AACATCTACAAAGCTCCAACCAGAGGGCATTAAAACTACAGTCAAAACAA
AAACGACAAAAAGAAAGGAACGAAATACAAAAATGTAAATACCAAAAATG
ATATACCAGGTAATAGATAGGACGCAGAGACGCGCAGGGAACCCATAAAT
ACAACGGATGCTTGGCGCAGTGTATAGAATACCTACTACTCTTTGGTGTA
CGGCAACGTTTTGTGTGGTGGGAATTTGTCGAAAATTTAAAAGGCGAGAA
AATAAAAAAAAGGAGGGGGGGGGGAGGAAAAAAGAAAGGAGAAGGAAGCC
CCAGAAAACATTGGATGCGTCAATGAATTTCCTTGTTCACGGTTGTACCG
TATGTTAAACGCGTGTCGTGCGTTCGATCATGACTTAGCGACTTTTTCTT
TTTGGTGACTTCTCTGTTTCGTCGAGGTTTATATTGGATATAGATTATAC
TTTGCTAGGGGAAGTATTATTGTCACGATTCTCGAGTTATTAATGGTACG
CATTATACCCTTCTACAGTATCATGCTTTACAGGAGGATGTGACTCCTTC
GTATTTAGTCTTCTGATGATCATCATCGTCTCTTGGGGTTATACTTTGGT
CTTCATGTGTCTCCCCTATATGCTCATTAAGAATGATATGTTCATCATAT
CATTTCCCGAAGTCTCTTAAATCTTCCTGTGGCGAGTGTCGTTGACGTCG
AGGTTAACCCTGAGATGCCACGGAACAGGAGCAAGGCTGACCCCGAGGGC
AATGGCCCTTTTCCCCATCATGATGAAATCGGGTCTGGCGAACCCACAGT
TGTTGTTGTTGTTTTCTCACATTAACTGATCCGCTACGAATCCAGCCGTG
GTCACAAGATAGACGGAACCAAACCAAATCAAACCGGGAATCGGAGATAA
GCATGGAAAGCAGACAGAAGAGAACGGACAAGGAAGTAGCCAGCAAAGGG
CATCGTCGCGATAAAATAGAAAACATAAACAAAAACACACAGACAGTAAA
AACAAACTAGAGGCAACCGCATAAAAACGCAGGGAAGGTAGCCCTATAAG
CGGTGGGATACAACCCAGGCATGAAGACAAGGGCAAGGGCAACGGATGCA
ACACACAGCGAAAAAAAAACACAGATGGAGAGAAGGAGACAACAATCAAA
GGATATAAAAGAATGAGGTGTACAGGCATAAGGAGCATCGCGATGGGTTA
ACTACCCAAAAATGAAAGAGGAGCAGAACCCATACCGGGCTCACCCATAT
CGCAGGAGGAAGACAAATTAAAAACAAAACACAAAAAGGACACAAAGTCG
CACACGTTGTTGTTTATCTCACATTAACTGGTCCGCTACGAATCCAGCTG
TGGTCACAAGATAGAGGAAGTTACACCAAAACAAATTGGGGACGAACACG
GTCGGAAAAGAAAAGAAAAGAAAAGAAAGCAGACAGAAGGAAGCGGGCGT
AGAAGTAGCCTGCAGAGGACATCATCGGCAGGAAGGGATTCAGGAGGAGA
AAAACCAAGGAACAAAAACAAAACAAACCAGGGCAACCACATATAATATG
CGTAGGGCAAGAAAGGCAACCATATACATATATAAGTGGTGCAAAACAGC
CCAGATAGGAAGACAAAGCAAGGACAAGGACAACGAGTTCGCCACACAGA
GGAATAAAATGAAGGAGGAGGGAAAGGGGTACAGCAATCAAATCAAATAA
GGAAAGAGGTAAACAGCCACAGGGAGGGGCATCATGAGTACCGGACTCCC
CTACGGTATATCACAGGGAGAAAAACACCTAGAAACAACAGCAACGAGGC
AAAACAAAAAAAAATCGCACACGTAATTACTGTACAACTTCACTAACCTC
GCGCTGGCGTTGCACGTTGGATTGACGAAGGTCTGCGCGTCGCCAGGCTG
TCGAGTGCTTCCGCTCCCCTCTCGACCCCCCGGTACCGCTTGCCCATGTT
CTTGCAGTCCAATGTCCATCTTGACAACAACTCCGAATGCGAATCGGACG
AAGGCCTCGAATTGTTCTGGAAAACGACGTGCCGGTCGACCTCCTCGCTT
GGGTCCTTGCACCGCCAGCCGCCCAAACATGACTCGCTTTGAAAGCCTTG
AGTCGCCTTGTCGTACAAGGGCCCCGGCGAGTGGAGGAACTATATCGAAT
GTTGGAAGAAAAATCGGACGAATGAACAAAAACTTCGATAAGATGACAAG
CCGCTTCGACCCATGGTTAGACAAGCTTATTGAGAAGACGAGAGAGACAA
ATCAGCGTTTAGCAGACCTGCAGTATCAAGCTCAGCAGCCACGTCTCGCC
ACGGAGGCAGACGTAGAACCAGACACGAACACTCGCAAGCAGATCGAGCA
AAGCACAAGAATAGCTCTTCTACCAGGGTCGATAACGGCCCGACGAGTTT
GACCAGCTTCGGCAGGATAGCCGAACCTCTTATGTTGGCTCCCGAAAAAT
GCATAGGTGACGCCTCGGTCAACAAAGGCGCTGAAGCGCCAAAGCCGCAT
TTTCCACTCGTGAAGGTGCGCATGATATCATCCGCCGCTGGTAGCTTAAT
GCCCGCCGGCAAAGCCTCGACAACGAGGAAGGCCATCTTTCCCCTACCGC
CTCGTTCTTGGAGCCTCGGTAAAAAGACCAAAAAGAGAACCGGCCGGACA
AACTTCAACCAGCTTGCTCCTCCCCGTTGGAGGAAGGCCATTGAAAAAAA
ATTAAGGCAAACTCTGGTGTTTGATCCTGGCGGTTACAGGTCGTCTACGC
GCCTGCCCATTTCTGGGAGGGCGACGTTTGGGACGCTGCGACGGTATCCG
AGGCTGAAGCATTTTTGTTGAACGGAGGACAACTTCTTTTTTCAAGAGAA
GGACGAGCGATTTGGTACGCCGTACGTTATTACGGAAGATCGCTACTTCC
CCGAAGCCAGAACGACAACTGGATCGGGTAACGGCACGAGGTTGTGGAAA
CTGCGAGGGGTGAACGGATGGCGAGGAACTCCACGGAGGGAGGAGCTTGG
TGGCAAGTACGATCGGGAGTCGAAAGGATCCGCTTTTTCCTGCATACGAA
GTCATGAGCAGCAGGGGACAAAATATAAATTCCCCAAGCATTTACAGAAA
AAAATGTTTTGGTGAGATGAAGAACGGCGGTGGTTTTAAAAACGAGAGCT
TGTTTCATCTTTATTTTTGAACCGCTGGGTGGATTTAATCTGCCGATGAC
TCAAACGAAAGCCCTTGCTGGTGCGATCACAGAGATGCATTGTTCGATAG
TGGGCAAGATGTCAAGCAACAGTTATAAAATGTACCTGATGTCGATTCTG
GTGAACAGCTCTGTTCGCCGTAATTGTGGAAAAATCCGAGAAAATCCTCT
CACAGTCCCACAAAGTGACGGATCGAGCTGAAAATGGGACGAGTCCTTTC
TTTTGACAGATCCTTTCGTTTGAGCCATTGAGGAATCGAACCCGCCCAGC
GGTTTAAACAAAACGAAAATATAAGCTCCCGTTCTTGAAAAAAACGCCGT
TCTTCATCTCCCCTAAACATTAATAAATGTGGTATTATGCTGGTTTTAAA
GGGGGTGGTGTTTTTGCGCGATTGTATCTGGCGCCTGAGTCCAGCAGCCA
TCTGTAGTTTTATCATTTTCGCTTTAACTTGTACTTCTATACCAGTTACA
TGGACGAATCGAGTAGTATTCAAAAATAAAATGCACCTCCGCAAACTCGT
GCATATCAGTTAGTTATTCGCATGCGAGTGCTCGTTCGGGGAGGTTATTA
TCGCTCCTGAAAACTAGCGCATAGCTCCCGTTATTCGCCTGCGAGAGTTC
GACTCGAGGGTATTATCGATTTTGATTGCACGACTGCTTTGAGTAGTCTA
ATCTGCCTAAATACTGCACTCTGACTACGTGAGAATAAAATTGTAGTGCG
TCGAGGTACTTGTTTTGTATTGCTTAAACCTTGTATGGTTCTTCGAAAAA
CAATGTCCCAACATTGTTCGCGGCGTGTATTGTGACACTTGAAACAGTTT
CCCCTTTCGTCTGAGATCGTATGAAAAAACAGTACTGTAAGCTTTGGTGC
CGAAGGCGCAGACTTATACAGTACATTAGTCCATTGTACTGAAACGTGAA
TTTCTTACAGCACTGGAATGGGGCTCGTTGAAGCCAGTTGATAGCCGTAG
ATAGCTTGAATGATTGTTGTCGGAAAATGAATGCCACCAATGCTTGACTG
ATCATTTTTTCCTATACAGTGGCAAAAGAATGCTAAACGTAATGTATACT
CGTAGCTGACGACGTATATTGTTGTTTGTACGTCTCTATTATCATGTTTC
GAAATTCGACGAAAGGCTCATTTTCGGCTGATCTTAAAAATTCATCGATG
AAAATATACCATCAAGAGAATGATAGCTTGTGGATCGTAAAAGGGTTCTG
CCTTTCTAAAGCAGTAGGGCCCTCTTTAGTACTGACCTTTTGTTCGCCCT
CTTTGTTCGTAACAGGACTTACCCTGCAAGGTAGGTTTATTCAGCTTGGA
ATTTCATCTTTGAGAACGCTTTTATTGCGGAAGAAAAATTTCCTTTCGCG
CTTTGATTTCTATCGCGTACTGTCGGTACGCACTTGCGACGTGGATTCCT
CAATTGCGATAGCCGAATCTTTAGGCTATTCGAAGTCGTTGAGTAGTTTG
TTTTTTATCCTGCTGACATGAAGTCTGACTGATATCTGACTTTTTGAGCA
ACTCTTTTTCTTCTAATTTTCGACGGTATTATTACTATCTAGTAAAATCG
ATGGGAGGGTATTCGAGTATATAGATTGTACTATGTCAGGGGAATTATTA
TTGTCATGATTCTCCAGGGAGTTCTTACGCAGTATACCCTTCAACAGGGT
CACGCTATAGTGAAGGATGTGATGCCCCTATGATTTAGTCTTCTGACGAT
TACCTTCTTTTTCTGACGATTACCATCTTCTCTTGAGGTTATACTTCCGT
CCCAATCTGTCTCCCCTTTGCTACGTTAATAATGATATATTCTTCATAAC
ATCTCCCAAAGTCCCTTAATCCTCCCTGTGGCGACGGAGTTTTATCAGTT
TACCCCTCGAACAACATGCATCTGGCTGCATCTTTAGAGAGGCGTTCTCC
TACTAACTTGCAATGTCGTTGCTGTTTCACATCCAACCTCTCCTCCATCC
ACCTACTTGCGCCGAATTCTTCACGGCTTCCCTCTGCGGCCTCTGTCGCC
TGTGGCGTGCCTGATACCACCTTTGCTTACCTCGATTTGTTGTTACGACT
GTTTTGACGCTGACGACGGTTTCGACGCTGACGACGGTTTCGACGCTGAC
GACGGTTTCATCCGACAATGAAGGAGATGGCCGACCGACTCTCGGAGCTC
GAGGGACTTGCAGGCAAGATACGACGTATTGTAACATTCTAACATGATGA
CGGCATAGAGCCTGTAAACTATTTCTTGGTAGCTCTACTTTATCGTCTTT
GGCGTAGCACGATTTTCTTATTTTTCCACAAGTAGGAGCAAGCGCACTCA
GTTATACGTGTTATTATTTTCTCGTTCTTAATTGCCTATGGAACGGGTTA
AGGACAAGGTGTGTCTTACTTTTGGCATTCACTGAGTGTTGGGACCCATC
ATCCCGCCCAAGCATGTCTCCACTGTTCGAACCACGTAACATTTCTATAG
AGCTATCTACCCTTCAAACGCTGGCGTTCCTGCCTAATGACATTGCCTAC
CGCTACTGTTACAATAGCCTCTTGACAGCAGCGAAAACTTTCGTCGCGTG
TCGCGTGATCTGCGATCTCAAATATCTCCAGATTCGAGCAACTTTATTAT
TATTATTATTGTATTACATTTGCCATTGTCATTATTATTATTATCAACAT
CTTATTTTATTTTTTTATCCCCCTTCCCCCCTCCCACCTCCTCTATGGAA
TGCAGGAGCGCGATCAGACAGCGGGACGTTGCTTCGAGAGCACCAAGAAG
AAATGCTCGTCAAGATGCGGGAGATTCGACAGGCACTGGCGTCGGAGAGC
GGCGAACTCGAGTCCGTGAAGGCGGCGAACGAAGAGATGGCCAAGCTGAG
GGAGCTCATAAAAAGGAAAGACTACCGCATCCTGCACCTCACGAGGGCGT
TGGATGCCGCCAGCACCTAGATGCGTCACCACTGTCATCGGGCATACGAG
TCAGCACGGCAAACGAGCTGATGCCGCTTGAACCCTTGTCTCTTTCCGAT
CCAAATCGCCCAACGCAGCGCCTCATTTTTTTAGGGTGAATGTTCGGGGG
TATCATTTCCTTCGCGGTAGCTCATTCAGCGTCCAGGAACAACCAACGGT
AATTTCGCTTCTTCGTATGATAGCAATAGCTCAAAAGACCGTAAAGACAG
CGATTTGTTTGCCTTACGGCGACATCGCTGAAAAAGTACGTCAATCAAAT
ACCTGTAAATTCTTGGGAGTTTGTAAGGAAAAATGTCCGCCCTTGGAGAG
GAAGAGCTCACTCACTGTAAGTGTTTCTGAACCTTCGACTAATATAAAGC
GGTTGTATGCACGCTTTGAGCGACCCAGTGGAGTTCCACGTGACTGTGGG
AGGTGATCTCATCGTATACATTGAGGAATCCTCAATTTGAGGATCAGAGA
TGCCCAAATCTACGAATGCGTCGAAGATCTGGGAACTAGGACAGAGCGCT
GGCAATATTTTGAGCCAGAAACCACACATGAAGGCATTTTTACTCCTTGG
TTTTTATCAAGGGGAAGAAATCCTAAAGAAGCTCAATCGCCGAAGAGCAG
AGCGTCAGTTGAAACCTCTACAAGGTGGCAATCTCCTCAGCTCAGGCATG
GTATGAAATGGCATAAGAAATCTCATTGCCTCTTCCCATGTGGTGTTTTT
GACCTGTTCGAGCAATAATAATGTGTCATTTCTGCAATTTTTCTTCGCAG
ATGGGTTCTATAACTCCATCGATGGCGTGAACAAGGGGGACCCCGACGTA
CATGAACCGTTGTAGCCTTTGGAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1005:90771..98594+

>mRNA_A-nodosum_M_contig1005.11.1 ID=mRNA_A-nodosum_M_contig1005.11.1|Name=mRNA_A-nodosum_M_contig1005.11.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at A-nodosum_M_contig1005:90771..98594+ (Ascophyllum nodosum dioecious)
ATGGCGAGGAACTCCACGGAGGGAGGAGCTTGGTGGCAAGAGATGGCCGA
CCGACTCTCGGAGCTCGAGGGACTTGCAGGAGCGCGATCAGACAGCGGGA
CGTTGCTTCGAGAGCACCAAGAAGAAATGCTCGTCAAGATGCGGGAGATT
CGACAGGCACTGGCGTCGGAGAGCGGCGAACTCGAGTCCGTGAAGGCGGC
GAACGAAGAGATGGCCAAGCTGAGGGAGCTCATAAAAAGGAAAGACTACC
GCATCCTGCACCTCACGAGGGCGTTGGATGCCGCCAGCACCTAG
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