mRNA_A-nodosum_M_contig1142.8.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1142.8.1 vs. uniprot
Match: A0A6H5KBT2_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBT2_9PHAE) HSP 1 Score: 83.2 bits (204), Expect = 3.110e-16 Identity = 48/129 (37.21%), Postives = 68/129 (52.71%), Query Frame = 2
Query: 2 EKKTVTMHMR----PPTMKAEA----VAVEAAGQRYSQVDTFVYLGSTISSVGDVGPEIKRRTGYAWNCFLKYSRAVYDNPYIAVADKVRFLKAEVLEVML-----WTLSPGDFDKLREAHRGMLLRCL 349
EKKT T+ MR P T A + +EAAGQ+Y+Q F YLG ++ GD+ EI R+ AW C +Y R ++D P K+R L+AE +E +L W+ G + LR H +LLR +
Sbjct: 316 EKKTETLLMRAKDKPTTTSQPAPPPPLTIEAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLRAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVI 444
BLAST of mRNA_A-nodosum_M_contig1142.8.1 vs. uniprot
Match: A0A183SI55_SCHSO (Uncharacterized protein n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A183SI55_SCHSO) HSP 1 Score: 60.8 bits (146), Expect = 2.360e-8 Identity = 37/119 (31.09%), Postives = 56/119 (47.06%), Query Frame = 2
Query: 8 KTVTMHMRPPTMKAEAVAVEAAGQRYSQVDTFVYLGSTISSVGDVGPEIKRRTGYAWNCFLKYSRAVYDNPYIAVADKVRFLKAEVLEVML-----WTLSPGDFDKLREAHRGMLLRCL 349
KTV MH PP+ + A + G + V+TF YLGST+S + E+ +R A F + +V++ I + K++ KA L+ +L WT+ KL H L R L
Sbjct: 442 KTVVMHQTPPSTEYNAPRIHVNGGQLKNVETFAYLGSTLSRNTRIDDEVVQRISKASQTFGQLQASVWNRHGIHLNTKLKMYKAVALKTLLYEAETWTVYSNQARKLNHIHLSCLRRIL 560
BLAST of mRNA_A-nodosum_M_contig1142.8.1 vs. uniprot
Match: A0A183TGW2_SCHSO (Uncharacterized protein n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A183TGW2_SCHSO) HSP 1 Score: 59.3 bits (142), Expect = 4.000e-8 Identity = 37/119 (31.09%), Postives = 54/119 (45.38%), Query Frame = 2
Query: 8 KTVTMHMRPPTMKAEAVAVEAAGQRYSQVDTFVYLGSTISSVGDVGPEIKRRTGYAWNCFLKYSRAVYDNPYIAVADKVRFLKAEVLEVML-----WTLSPGDFDKLREAHRGMLLRCL 349
KTV MH PP+ + A + G + V+TF YLGST+S E+ +R A F + +V++ + K++ KA VL +L WT+ KL H L R L
Sbjct: 19 KTVVMHQPPPSAEYNAPQININGAQLKNVETFAYLGSTMSRNARTDVEVAQRISKASQAFGRLQASVWNRHGFHLNTKLKMYKAVVLTTLLYGVEAWTVYSNQARKLNHFHLSCLRRIL 137
BLAST of mRNA_A-nodosum_M_contig1142.8.1 vs. uniprot
Match: A0A183TFG9_SCHSO (Reverse transcriptase domain-containing protein n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A183TFG9_SCHSO) HSP 1 Score: 58.2 bits (139), Expect = 1.590e-7 Identity = 34/111 (30.63%), Postives = 54/111 (48.65%), Query Frame = 2
Query: 8 KTVTMHMRPPTMKAEAVAVEAAGQRYSQVDTFVYLGSTISSVGDVGPEIKRRTGYAWNCFLKYSRAVYDNPYIAVADKVRFLKAEVLEVML-----WTLSPGDFDKLREAH 325
K V MH PP+ + A + G + V+TFVYLGST+S + E+ +R A F + +V++ I + +++ KA VL +L WT+ +KL H
Sbjct: 184 KMVVMHQPPPSAEYNAPRINVNGAQLKNVETFVYLGSTLSRKTRIDDEVTQRISKASQAFGRLQASVWNRHGIHLNTQLKINKAVVLTTLLYKAETWTVYSNQTNKLNHFH 294
BLAST of mRNA_A-nodosum_M_contig1142.8.1 vs. uniprot
Match: A0A183SM67_SCHSO (Uncharacterized protein n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A183SM67_SCHSO) HSP 1 Score: 56.2 bits (134), Expect = 2.390e-7 Identity = 35/119 (29.41%), Postives = 52/119 (43.70%), Query Frame = 2
Query: 8 KTVTMHMRPPTMKAEAVAVEAAGQRYSQVDTFVYLGSTISSVGDVGPEIKRRTGYAWNCFLKYSRAVYDNPYIAVADKVRFLKAEVLEVML-----WTLSPGDFDKLREAHRGMLLRCL 349
KTV MH PP+ K A + G + V+TF YLGST+S + E+ +R F + + ++ I + K++ KA VL +L WT+ H L R L
Sbjct: 23 KTVVMHQPPPSAKYNAPRINVNGDQLKNVETFAYLGSTLSRNMIINDEVTQRISKPRQAFGRLQTSTWNRHGIHLNTKLKMYKAVVLTTLLYGGETWTVYSNQARNRNHFHLSCLRRIL 141
BLAST of mRNA_A-nodosum_M_contig1142.8.1 vs. uniprot
Match: A0A183TEZ8_SCHSO (Reverse transcriptase domain-containing protein n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A183TEZ8_SCHSO) HSP 1 Score: 57.0 bits (136), Expect = 4.770e-7 Identity = 38/119 (31.93%), Postives = 53/119 (44.54%), Query Frame = 2
Query: 8 KTVTMHMRPPTMKAEAVAVEAAGQRYSQVDTFVYLGSTISSVGDVGPEIKRRTGYAWNCFLKYSRAVYDNPYIAVADKVRFLKAEVLEVML-----WTLSPGDFDKLREAHRGMLLRCL 349
K V MH P T + A + G + V+TF YLGST+S + E +R A F + +V++ I + K++ KA VL +L WTL KL H L R L
Sbjct: 139 KMVVMHQPPFTAEYNAPRINVNGAQLKNVETFAYLGSTLSRNAKIDDEFAQRISKASQAFGRLQASVWNRHSIHLNTKLKMYKAVVLTTLLYGAETWTLYSNLAMKLNHFHLSCLRRIL 257
BLAST of mRNA_A-nodosum_M_contig1142.8.1 vs. uniprot
Match: A0A7M3Q5D8_SPIER (Hypothetical protein n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3Q5D8_SPIER) HSP 1 Score: 54.7 bits (130), Expect = 6.380e-7 Identity = 37/122 (30.33%), Postives = 55/122 (45.08%), Query Frame = 2
Query: 5 KKTVTMHMRPP--TMKAEAVAVEAAGQRYSQVDTFVYLGSTISSVGDVGPEIKRRTGYAWNCFLKYSRAVYDNPYIAVADKVRFLKAEVLEVML-----WTLSPGDFDKLREAHRGMLLRCL 349
KK V MH PP T + A + G + VD+F YLGST+S + E+ RR A F + V + + ++ K++ KA +L +L WT+ +L H L R L
Sbjct: 22 KKMVVMHQPPPNATPLSNAPQISMNGTQQQVVDSFPYLGSTLSRSTKIDDEVARRISKASQTFSRPQSTVLNRHGLQLSTKLKVYKAVILPTLLYGAETWTVYTKQARRLNHFHLSFLRRIL 143
BLAST of mRNA_A-nodosum_M_contig1142.8.1 vs. uniprot
Match: A0A8K0K052_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0K052_LADFU) HSP 1 Score: 54.3 bits (129), Expect = 9.910e-7 Identity = 31/90 (34.44%), Postives = 44/90 (48.89%), Query Frame = 2
Query: 14 VTMHMRPPTMKAEAVAVEAAGQRYSQVDTFVYLGSTISSVGDVGPEIKRRTGYAWNCFLKYSRAVYDNPYIAVADKVRFLKAEVLEVMLW 283
+ M P AV A + +VD F YLGS ++S GD+ EI R A + F K + V+ N ++ KV KA VL V+L+
Sbjct: 24 LVMKCHAPLSPQIETAVSLASSQIEEVDQFSYLGSLVTSKGDMDTEINHRFQCAAHAFYKLRKRVFKNKDLSAKTKVAVFKAVVLSVLLY 113
BLAST of mRNA_A-nodosum_M_contig1142.8.1 vs. uniprot
Match: A0A183TCJ5_SCHSO (Uncharacterized protein n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A183TCJ5_SCHSO) HSP 1 Score: 54.7 bits (130), Expect = 1.460e-6 Identity = 35/119 (29.41%), Postives = 54/119 (45.38%), Query Frame = 2
Query: 8 KTVTMHMRPPTMKAEAVAVEAAGQRYSQVDTFVYLGSTISSVGDVGPEIKRRTGYAWNCFLKYSRAVYDNPYIAVADKVRFLKAEVLEVML-----WTLSPGDFDKLREAHRGMLLRCL 349
KTV M RPP+ + A + G V+TF YLGST+S + E+ +R F + +V+++ I + K++ +A VL +L W+ KL H L R L
Sbjct: 28 KTVVMRQRPPSAEYNAPRINVNGAHLKNVETFAYLGSTLSRNTRIDDEVAQRILKISQAFGRLQASVWNSHGIHLKTKLKMYEAVVLTTLLYGAETWSTYSNQDRKLNHFHLSYLRRIL 146
BLAST of mRNA_A-nodosum_M_contig1142.8.1 vs. uniprot
Match: A0A183TLP1_SCHSO (Reverse transcriptase domain-containing protein n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A183TLP1_SCHSO) HSP 1 Score: 53.5 bits (127), Expect = 2.820e-6 Identity = 33/104 (31.73%), Postives = 49/104 (47.12%), Query Frame = 2
Query: 8 KTVTMHMRPPTMKAEAVAVEAAGQRYSQVDTFVYLGSTISSVGDVGPEIKRRTGYAWNCFLKYSRAVYDNPYIAVADKVRFLKAEVLEVMLWTLSPGDFDKLRE 319
KTV MH PPT K A + G ++ V+TF YLG T+S + E+ +R A F + + + I V K++ K VL ++ + G D L E
Sbjct: 51 KTVVMHQPPPTAKYNAPRINVNGAQFKNVETFAYLGGTMSRNTRIDDELAQRICKASQAFSRLQAFMCNRHGIHVNTKLKMYKVVVLATLIRS---GGLDHLLE 151 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1142.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1142.8.1 >prot_A-nodosum_M_contig1142.8.1 ID=prot_A-nodosum_M_contig1142.8.1|Name=mRNA_A-nodosum_M_contig1142.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=112bp MHMRPPTMKAEAVAVEAAGQRYSQVDTFVYLGSTISSVGDVGPEIKRRTGback to top mRNA from alignment at A-nodosum_M_contig1142:252860..253229- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1142.8.1 ID=mRNA_A-nodosum_M_contig1142.8.1|Name=mRNA_A-nodosum_M_contig1142.8.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=370bp|location=Sequence derived from alignment at A-nodosum_M_contig1142:252860..253229- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1142:252860..253229- >mRNA_A-nodosum_M_contig1142.8.1 ID=mRNA_A-nodosum_M_contig1142.8.1|Name=mRNA_A-nodosum_M_contig1142.8.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at A-nodosum_M_contig1142:252860..253229- (Ascophyllum nodosum dioecious)back to top |