mRNA_A-nodosum_M_contig1142.7.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1142.7.1 vs. uniprot
Match: A0A6H5KBW3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW3_9PHAE) HSP 1 Score: 430 bits (1105), Expect = 2.260e-136 Identity = 229/483 (47.41%), Postives = 286/483 (59.21%), Query Frame = 2
Query: 140 MTRMIAVLLTCFAPSVLAASPPGSSLRRSQEDTEATVVAP---RRLSTSDLAPAEDEDGYYAHLGCYMDK-KDDRVLGMKLVRDDVTAELCHEYCNVNGAFYMATQFGNECFCSREGDLDFDRHDVGVCDKPCAGDDSERCGGYYAFDLYELVWPDTPTDLEYMDCYADDAEERVMSNMYISDDMTSAICRDHCKDKNALYYATQYGHECWCGTSDVFADYEKYGKGTCHMRCAGDTSAACGGRYAFSLYRL-IDESPEPAXXXXXXXXXXXXXXXXSTAEVGSVNYANSKYPFDG----TTFSGDGTYYGETSDGNCAIRSPIPRMYDGMIPVALNAAQYGGSELCGACIEGEGSGNGAGSNPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECPGSTTPSFIFEGSHEYYWKIQPRGTKTPVMELTVDGASGSKTDDNFFEVPG-APYPLYGAQRVKTTTMMGKTATQEVSL 1558
MTR+ A LL C P +SL S E A R LS S Y HLGCY+D + + LV D +T ELC++ C+ GAF+M TQ GNEC CSRE DLD+ + GVCD+PCAGD +E CGG DLY+L D P EY C++D E RVM +M + + MT+ +CRDHC+ +A+YYATQYG+EC+CG S DYE +G GTCHM CAGD+ +ACGG +AFSL++ D P+PA + S++ A SK P G TTF GDGTYY S GNC P +Y GM PVALNAAQYG S +CG+C+EGEG+G G G NPI G+FK ++MDKCPEC GDLDF DGRWDI W+FV CPG + E + YYWKIQPRGT TPV LT+ G + ++TDDN FE+ + P Y Q V TTT+ G E+S+
Sbjct: 65 MTRLAAALLVCATPV--------ASLETSLRGAEVAAAAGGARRGLSGSSYES-------YEHLGCYVDNGMVNSSPHLPLVLDAMTNELCYDRCHELGAFFMGTQKGNECRCSREEDLDYFSFESGVCDEPCAGDSTETCGGDLTLDLYKLTPADEPDHEEYEGCWSDLGESRVMQDMLVDESMTTDMCRDHCESSDAVYYATQYGNECFCGYSSDPEDYETHGPGTCHMHCAGDSGSACGGYWAFSLFKFGADGMPDPAVPDVSEPPSEPAPEPVVSTPAPSMSEAESKTPISGGVYGTTFEGDGTYYTGISAGNCGFFDDFPSIYSGMTPVALNAAQYGDSLMCGSCVEGEGTGGGGGDNPI-GTFKGFIMDKCPECHEGDLDFGTGLDGRWDIEWRFVACPGEEVSFKVVEMT-PYYWKIQPRGTATPVESLTIGGRAAARTDDNHFELEHPSGNPWYEPQMVVTTTVGGVVEETEMSV 530
BLAST of mRNA_A-nodosum_M_contig1142.7.1 vs. uniprot
Match: D8LGP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP4_ECTSI) HSP 1 Score: 414 bits (1063), Expect = 1.110e-130 Identity = 234/513 (45.61%), Postives = 295/513 (57.50%), Query Frame = 2
Query: 140 MTRMIAVLLTCFAPSVLAASPPGSSLRRSQEDTEATVVAPRRLSTSDLAPAEDEDGYYAHLGCYMDKKDDRVLG-MKLVRDDVTAELCHEYCNVNGAFYMATQFGNECFCSREGDLDFDRHDVGVCDKPCAGDDSERCGGYYAFDLYELVWPDTPTDLEYMDCYADDAEERVMSNMYISDDMTSAICRDHCKDKNALYYATQYGHECWCGTSDVFADYEKYGKGTCHMRCAGDTSAACGGRYAFSLYRL-IDESPEPAXXXXXXXXXXXXXXXXS------------------------------------TAEVGSVNYANSKYPFDGTTFSGDGTYYGETSDGNCAIRSPIPRMYDGMIPVALNAAQYGGSELCGACIEGEGSGNGAGSNPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECPGSTTPSFIFEGSHEYYWKIQPRGTKTPVMELTVDGASGSKTDDNFFEV--PGAPYPLYGAQRVKTTTMMGKTATQEVSL 1558
MTR+ A LL C P +SL S E + RR + A Y H+GCY+D + LV + +T E+C++ C+ G+F+M TQ GNEC CSRE DL + D GVCD PCAGD E CGG DLY+L TP EY+ C++D E RVM +M + + MT+ +CRDHC+ +A+YYATQYG+EC+CG S DYE +G GTCHM C GD+ +ACGG +AFSLY+ D PEP XXXXXXXXXXX ++ G + + +Y G TF+G+GTYY TS GNC P +YDGM PVALN QYG S +CGAC+EGEG+G G+GS+P+ G+FK ++MDKCPEC+ GDLDF DGRWDI WKFVECP SF E EYYWKIQPRGT TPV LT+ G + ++TDDN FE+ P P Y Q V TTT+ G E+S+
Sbjct: 1 MTRLAAALLVCATPV--------ASLETSLRGAEVSAGGARRGLSGSSYEA------YEHVGCYVDNGMVNARPHLPLVMETMTNEMCYDRCHELGSFFMGTQKGNECRCSREEDLAYSAFDFGVCDIPCAGDSDETCGGQLTIDLYKLTAAQTPDHEEYVGCWSDANESRVMEDMLVDEGMTTDMCRDHCESSDAVYYATQYGNECFCGYSSDPEDYETHGLGTCHMHCGGDSGSACGGYWAFSLYQFGADGMPEPDVPESTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSSGGGGGDVSGGEY---GITFNGEGTYYTGTSAGNCGFFDDFPSIYDGMTPVALNEPQYGDSLMCGACVEGEGTGGGSGSDPV-GTFKGFIMDKCPECSEGDLDFGTGKDGRWDIKWKFVECPAGEEVSFKVEQKTEYYWKIQPRGTATPVESLTIGGRAAARTDDNHFELEHPSGD-PWYEPQMVVTTTVGGVVEETEMSV 494
BLAST of mRNA_A-nodosum_M_contig1142.7.1 vs. uniprot
Match: D8LRN1_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D8LRN1_ECTSI) HSP 1 Score: 242 bits (617), Expect = 4.300e-69 Identity = 113/193 (58.55%), Postives = 137/193 (70.98%), Query Frame = 2
Query: 980 NYANSKYPFDGTTFSGDGTYYGETSDGNCAIRSPIPRMYDGMIPVALNAAQYGGSELCGACIEGEGSGNGAGSNPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECPGSTTPSFIFEGSHEYYWKIQPRGTKTPVMELTVDGASGSKTDDNFFEVPGAPYPLYGAQRVKTTTMMGKTATQEVSL 1558
+Y+ +Y G +SG+GTYYG T+ G C+ +P MYDGMIPVALNA QYG S +CGAC+EG SG+G+G+NPI +FKA++ DKCPEC GDLDFS SGDGRWDI WKFV CPG T SF+ ++ YYWK+QPRGT TPV+ LTVDG S +T DN FEV GAQ V TTT+ G T T EVS+
Sbjct: 98 SYSGGQY---GEEYSGEGTYYGHTTAGMCSFFDDVPEMYDGMIPVALNAEQYGDSLMCGACVEGTASGSGSGNNPIPSTFKAFITDKCPECQKGDLDFSMSGDGRWDIEWKFVACPGEET-SFVSPSANPYYWKVQPRGTTTPVVSLTVDGQSAMRTTDNHFEVHNDGAAWSGAQTVVTTTVSGVTETAEVSV 286
BLAST of mRNA_A-nodosum_M_contig1142.7.1 vs. uniprot
Match: D8LHU1_ECTSI (Putative lipoprotein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHU1_ECTSI) HSP 1 Score: 237 bits (605), Expect = 2.530e-68 Identity = 109/188 (57.98%), Postives = 135/188 (71.81%), Query Frame = 2
Query: 1001 PFDGTTFSGDGTYYGET--SDGNCAIRSPIPRMYDGMIPVALNAAQYGGSELCGACIEGEGSGNGAGSNPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECPGSTTPSFIFEGSHEYYWKIQPRGTKTPVMELTVDGASGSKTDDNFFEVPGAPYPLYGAQRVKTTTMMGKTATQEVSL 1558
P+D FSGD TYYG T DGNCAIRSP+P MYDGMIPVALN QY S +CGACIEGEG G G G +P+ G+FKAYV D+CPEC GDLDF+ GDGRWDISW FV C G + +F+FEGS+E+YWKIQPRG ++PV L ++G +++DNFF + G P+ G Q V T T++ K Q V++
Sbjct: 36 PYD-EQFSGDATYYGVTPDGDGNCAIRSPLPEMYDGMIPVALNDEQYADSYMCGACIEGEGFGEGEGRDPVEGAFKAYVTDRCPECLFGDLDFAADGDGRWDISWHFVPCEGGSDQTFLFEGSNEFYWKIQPRGGRSPVERLWINGDEAERSEDNFFILEGGPFD--GEQEVHTKTVLNKRRRQSVAM 220
BLAST of mRNA_A-nodosum_M_contig1142.7.1 vs. uniprot
Match: D7FRE8_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE8_ECTSI) HSP 1 Score: 254 bits (648), Expect = 6.830e-66 Identity = 116/216 (53.70%), Postives = 153/216 (70.83%), Query Frame = 2
Query: 269 STSDLAPAED--EDGYYAHLGCYMDKKDDRVLGMK-LVRDDVTAELCHEYCNVNGAFYMATQFGNECFCSREGDLDFDRH-DVGVCDKPCAGDDSERCGGYYAFDLYELVWPDTPTDLEYMDCYADDAEERVMSNMYISDDMTSAICRDHCKDKNALYYATQYGHECWCGTSDVFADYEKYGKGTCHMRCAGDTSAACGGRYAFSLYRLIDESPEP 904
S+ D + +E G Y H+GC+ D + DRVL L+ D+TAELC+E C+ GA YMATQ+G EC+CSR+G LD+DRH D GVCD PC GD+SE CGG ++F+LY L W P D EY+ CY D+ +RV+S+M SDDMT+A+CR+HC DK+A YY TQ+ ECWCGTSD ADYE++G+G CHM C+GD + ACGG A+SL++ + P
Sbjct: 1129 SSDDFSESEPGGRPGAYEHVGCFQDSQSDRVLQRSGLISGDMTAELCYETCSTKGAAYMATQWGVECWCSRDGSLDYDRHGDTGVCDYPCRGDESETCGGVHSFNLYRLSWAPAPEDEEYVGCYTDNKGDRVLSDMISSDDMTAAVCREHCADKDAPYYGTQFSSECWCGTSDDDADYERHGEGVCHMACSGDGTVACGGYDAYSLFKYDNGGEAP 1344
BLAST of mRNA_A-nodosum_M_contig1142.7.1 vs. uniprot
Match: A0A6H5JJ37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ37_9PHAE) HSP 1 Score: 233 bits (594), Expect = 2.080e-59 Identity = 105/194 (54.12%), Postives = 140/194 (72.16%), Query Frame = 2
Query: 308 YYAHLGC--YMDKKDDRVLGMKLVRDDVTAELCHEYCNVNGAFYMATQFGNECFCSREGDLDFDRH-DVGVCDKPCAGDDSERCGGYYAFDLYELVWPDTPTDLEYMDCYADDAEERVMSNMYISDDMTSAICRDHCKDKNALYYATQYGHECWCGTSDVFADYEKYGKGTCHMRCAGDTSAACGGRYAFSLYR 880
Y+A L C ++ K+ + L+ D+TAELC+E C+ GA YMATQ+G EC+CSR+G LD+DRH D GVCD PC GD+SE CGG ++F+LY L W P D EY+ CYAD +RV+ +M SD+MT+ +CR+HC DK+A YY TQ+ ECWCGTSD ADYE++G+G CHM C+GD + ACGG A+SL++
Sbjct: 797 YFAGLACLPHLAKQPLHHVRSGLISSDMTAELCYETCSAKGAAYMATQWGVECWCSRDGSLDYDRHGDTGVCDYPCIGDESETCGGVHSFNLYRLSWAPAPEDEEYVGCYADSKGDRVLFDMISSDNMTAGVCREHCADKDAPYYGTQFSSECWCGTSDDEADYERHGEGVCHMACSGDGTVACGGYDAYSLFK 990
BLAST of mRNA_A-nodosum_M_contig1142.7.1 vs. uniprot
Match: F2Z7J0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis andersonii TaxID=408198 RepID=F2Z7J0_9FLOR) HSP 1 Score: 211 bits (538), Expect = 3.630e-58 Identity = 95/162 (58.64%), Postives = 119/162 (73.46%), Query Frame = 2
Query: 1016 TFSGDGTYYGETSDGNCAIRSPIPRMYDGMIPVALNAAQYGGSELCGACIEGEGSGNGAGSNPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECPGSTTPSFIFEGSHEYYWKIQPRGTKTPVMELTVDGASGSKTDDNFFEVP---GAPYPL 1492
TF GDGTYYG T+ GNCAIRSP+P MY GM+PVA+N AQY S+ CGAC+ G G G+G+NP+ G+FKAYV D+CPEC GD+D SKSGDGRW + W+F+ CPG F+FEGS+ +Y K+QPRG KTPV +V+G G+KT DNF+ + G YPL
Sbjct: 23 TFFGDGTYYGYTTRGNCAIRSPLPGMYSGMVPVAINNAQYEESKSCGACLLVTGYGQGSGANPVVGTFKAYVHDRCPECKYGDIDLSKSGDGRWKVQWRFIPCPGEWV-FFLFEGSNRFYLKLQPRGLKTPVTYFSVNGQQGTKTQDNFYILQNGGGFRYPL 183
BLAST of mRNA_A-nodosum_M_contig1142.7.1 vs. uniprot
Match: A0A2V3ISL2_9FLOR (Expansin-YoaJ n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISL2_9FLOR) HSP 1 Score: 211 bits (536), Expect = 7.260e-58 Identity = 102/187 (54.55%), Postives = 126/187 (67.38%), Query Frame = 2
Query: 1019 FSGDGTYYGETSDGNCAIRSPIPRMYDGMIPVALNAAQYGGSELCGACIEGEGSGNGAGSNPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECPGSTTPSFIFEGSHEYYWKIQPRGTKTPVMELTVDGASGSKTDDNFFEVPGAPYPLYGAQRVKTTTMMGKTATQEVSL*RIALSR 1579
F G+GTYYG T+ GNCAIRSP+P MY+GM+PVA+N AQY S CGAC++ G G G+G+NPI G+FKAYV D+CPEC GD+D SK GDGRW + WKF+ CPG F+FEGS+ YY K+QPRG KTPV L+V G G+KT DNF+ V G R T M +T E ++A SR
Sbjct: 29 FHGEGTYYGYTTRGNCAIRSPMPSMYNGMLPVAINNAQYENSASCGACLQVTGYGQGSGANPIRGTFKAYVHDRCPECKYGDIDLSKGGDGRWRVHWKFIPCPGEFV-FFLFEGSNRYYLKLQPRGLKTPVSALSVGGQWGTKTQDNFYIVQNG-----GGFRFPITVQM-RTVLNEWITVQLAYSR 208
BLAST of mRNA_A-nodosum_M_contig1142.7.1 vs. uniprot
Match: D8LED7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED7_ECTSI) HSP 1 Score: 206 bits (523), Expect = 3.950e-51 Identity = 92/202 (45.54%), Postives = 137/202 (67.82%), Query Frame = 2
Query: 302 DGYYAHLGCYMDKKDDRVLGMKLVRDDVTAELCHEYCNVNGAFYMATQFGNECFCSREGDLDFDRHDVGVCDKPCAGDDSERCGGYYAFDLYELVWPDTPTDLEYMDCYADDAEERVMSN-MYISDDMTSAICRDHCKDKNALYYATQYGHECWCGTSDVFADYEKYGKGTCHMRCAGDTSAACGGRYAFSLYRLIDESPEP 904
D Y+++GC+ D K+DRV +T +C EYC A YMATQ+G EC+CS + ++++DRH GVCD C GD ++ CGG+ AFDLY++ P PT EY+ C+ADD E+R++ + + + DMT A+CR +C++++A +YATQYG ECWCG S+ DY+++G+G+C C+GD + ACGG AF+L++ D EP
Sbjct: 430 DEGYSYVGCFADSKEDRVFEYMKTSSTMTTAVCLEYCLDRRATYMATQYGYECWCSVDAEVEYDRHSDGVCDHACGGDAADICGGFDAFDLYKITEPTEPTGDEYVGCFADDREDRLLGDEIKLQPDMTQAVCRTYCEERDAYFYATQYGDECWCGMSNDEEDYKRHGRGSCLAGCSGDPTVACGGFDAFNLFKF-DGIAEP 630
BLAST of mRNA_A-nodosum_M_contig1142.7.1 vs. uniprot
Match: A0A1X6NJE1_PORUM (Uncharacterized protein (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NJE1_PORUM) HSP 1 Score: 188 bits (477), Expect = 9.140e-51 Identity = 88/172 (51.16%), Postives = 114/172 (66.28%), Query Frame = 2
Query: 1010 GTTFSGDGTYYGETSDGNCAIRSPIPRMYDGMIPVALNAAQYGGSELCGACIEGEGSGNGAGSNPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECP-GSTTPSFIFEGSHEYYWKIQPRGTKTPVMELTVDGASGSKTDDNFFEVPGAPYPLYGAQRVKTTT 1522
G T +G+GTY+G T+ GNCA+ P+P Y G++ VA++ A Y GS CGAC+ GSG+GAG+NPITG+F AYVMD+CPECA GDLD + GDGRW +SW V CP P F+ EGS+ +Y K+Q RG P ++V GA+ ++T DNFF V A PL V TT
Sbjct: 45 GQTGAGEGTYFGPTTRGNCAL-DPLPAQYGGLVGVAVSTADYAGSAACGACLRVTGSGDGAGANPITGTFSAYVMDRCPECAAGDLDLATPGDGRWAVSWTVVPCPTAGGAPEFLLEGSNPHYLKVQVRGLPAPAASVSVGGAACARTQDNFFIVATAGPPLEPPLTVTGTT 215 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1142.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1142.7.1 >prot_A-nodosum_M_contig1142.7.1 ID=prot_A-nodosum_M_contig1142.7.1|Name=mRNA_A-nodosum_M_contig1142.7.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=474bp MTRMIAVLLTCFAPSVLAASPPGSSLRRSQEDTEATVVAPRRLSTSDLAPback to top mRNA from alignment at A-nodosum_M_contig1142:222917..236178- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1142.7.1 ID=mRNA_A-nodosum_M_contig1142.7.1|Name=mRNA_A-nodosum_M_contig1142.7.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=13262bp|location=Sequence derived from alignment at A-nodosum_M_contig1142:222917..236178- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1142:222917..236178- >mRNA_A-nodosum_M_contig1142.7.1 ID=mRNA_A-nodosum_M_contig1142.7.1|Name=mRNA_A-nodosum_M_contig1142.7.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1422bp|location=Sequence derived from alignment at A-nodosum_M_contig1142:222917..236178- (Ascophyllum nodosum dioecious)back to top |