mRNA_A-nodosum_M_contig1005.10.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1005.10.1
Unique NamemRNA_A-nodosum_M_contig1005.10.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1005.10.1 vs. uniprot
Match: D8LMY2_ECTSI (CSN8_PSD8_EIF3K domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMY2_ECTSI)

HSP 1 Score: 236 bits (603), Expect = 2.440e-72
Identity = 123/206 (59.71%), Postives = 151/206 (73.30%), Query Frame = 1 
Query:    1 AEDLRQNVQELVAKNDIPGAVVQCEELEILTAATPFGEKDEEWMKIHLTLLLVLDDVNNGRHLWRRLPASAKAGGGELSDLWGVGKCLWKRDIQGAQAALRGREWSPPIAGYVSLLRDRLWERQLDIISRGFNSLPLERVATLMGSSVDEAEKECAKEGWEVQAGT---VKPKPRA-KTETILSTTPDYLNKMARHITFLERQNQG 606
            ++ +R+ ++ LVAK D   AVV+CEELEILTA+TPFG++ ++   +HL LLL LDDVNN RHLWRRLPA+AKA GGE + LW VGK LWKRD+  AQAALR REWS P+A YV+L+  R+ ERQL II + F  LPLE VA ++  SV++AEK C KEGWEV A     VKP  R    +TI + TPDYL KMA HI FLERQ+QG
Sbjct:    8 SDTIRKKIEALVAKKDFRAAVVKCEELEILTASTPFGQQHQDAANVHLALLLALDDVNNARHLWRRLPAAAKAAGGETAALWEVGKSLWKRDMSFAQAALRDREWSAPLAPYVALIETRVRERQLAIIPKAFTVLPLESVAGMLACSVEDAEKACLKEGWEVDATAEKAVKPSVRLIPDDTIPAATPDYLQKMANHIAFLERQSQG 213
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BLAST of mRNA_A-nodosum_M_contig1005.10.1 vs. uniprot
Match: A0A6P8Y321_THRPL (COP9 signalosome complex subunit 8 n=1 Tax=Thrips palmi TaxID=161013 RepID=A0A6P8Y321_THRPL)

HSP 1 Score: 107 bits (266), Expect = 1.960e-23
Identity = 62/182 (34.07%), Postives = 103/182 (56.59%), Query Frame = 1 
Query:   61 VVQCEELEILTAATPFGEKDEEWMKIHLTLLLVLDDVNNGRHLWRRLPASAKAGGGELSDLWGVGKCLWKRDIQGAQAALRGREWSPPIAGYVSLLRDRLWERQLDIISRGFNSLPLERVATLMGSSVDEAEKECAKEGWEVQAGT-----VKPKPRAKTETILSTTPDYLNKMARHITFLE 591
            V  C ELE     +P GE   +     L + L   D+ N + LW+R+PASAK+   ELS +W VG+C+WKRD   A AAL+   WS  +   ++ L++ L  R +D+I+  ++S+ L  +A + G +  EAE+   + GW + A T     V+P P ++   +++++   LNK+  +++FLE
Sbjct:    7 VSTCAELERQELTSPTGEASPQEYAQLLAIYLCQSDLCNAKFLWKRIPASAKSSNEELSLIWKVGQCMWKRDYPAAYAALQA-PWSDNVRHIMTTLQEELRSRAIDLIANAYSSIALSDLAAMAGINDREAERISNERGWIIDAETEMVHPVRPPPSSQ---VITSSEGQLNKLTDYVSFLE 184
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BLAST of mRNA_A-nodosum_M_contig1005.10.1 vs. uniprot
Match: A0A7S2FNN9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FNN9_9STRA)

HSP 1 Score: 103 bits (258), Expect = 3.910e-22
Identity = 62/188 (32.98%), Postives = 93/188 (49.47%), Query Frame = 1 
Query:   34 VAKNDIPGAVVQCEELEILTAATPFGEKDEEWMKIHLTLLLVLDDVNNGRHLWRRLPASAKAGGGELSDLWGVGKCLWKRDIQGAQAALRGREWSPPIAGYVSLLRDRLWERQLDIISRGFNSLPLERVATLMGSSVDEAEKECAKEGWEVQAGTVKPKPRAKTETILSTTP-DYLNKMARHITFLER 594
            V   +   A   CEELE+ T +TP  +        H+ + ++L+D++N RHLWRR+    KAGG EL   W VGK LWKR+I  A AAL+ R WS  +A   + L + + E +  ++ + + ++ +   A  +G     A   C    W   AG V   P A      S      +  +A H+TFLE+
Sbjct:    9 VISGNYAAAARLCEELELETCSTPNTDAAPARYARHIMVYMILNDLDNARHLWRRIDEGIKAGGSELEATWEVGKLLWKREISAAYAALQ-RTWSAELAPLATALLEAVREHEFALLGKAYTNVGVSTAAAALGMDEAGALAFCTARNWTADAGGVMLTPVAPAPAEPSFEGLQQMQYLAEHVTFLEK 195
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BLAST of mRNA_A-nodosum_M_contig1005.10.1 vs. uniprot
Match: A0A6J1T3B4_FRAOC (COP9 signalosome complex subunit 8 n=1 Tax=Frankliniella occidentalis TaxID=133901 RepID=A0A6J1T3B4_FRAOC)

HSP 1 Score: 96.3 bits (238), Expect = 1.480e-19
Identity = 59/179 (32.96%), Postives = 95/179 (53.07%), Query Frame = 1 
Query:   70 CEELEILTAATPFGEKDEEWMKIHLTLLLVLDDVNNGRHLWRRLPASAKAGGGELSDLWGVGKCLWKRDIQGAQAALRGREWSPPIAGYVSLLRDRLWERQLDIISRGFNSLPLERVATLMGSSVDEAEKECAKEGWEVQAGT-----VKPKPRAKTETILSTTPDYLNKMARHITFLE 591
            C ELE L   +P GE   +     L + L   D+ N + LW+R+P S K    ELS +W VG+C+WKRD   A +AL+   WS  +   +  L+D L  R +D+I+  ++S+ +  ++ + G +  EAE+     GW + A T     V+P P +   T   ++   LNK+  +++FLE
Sbjct:   10 CAELERLELISPTGEATAQEYAQLLAIYLCQSDLCNAKFLWKRIPTSLKNSHDELSLIWKVGQCMWKRDYPAAYSALQV-SWSDNVRHIMLALQDELRTRAVDLIANAYSSITVSDLSAMAGINDREAERLSNARGWIIDAETEMVHPVRPPPSSHVTT---SSEGQLNKLTDYVSFLE 184
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BLAST of mRNA_A-nodosum_M_contig1005.10.1 vs. uniprot
Match: A0A7S2XW30_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XW30_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 3.240e-17
Identity = 66/186 (35.48%), Postives = 94/186 (50.54%), Query Frame = 1 
Query:    7 DLRQNVQELVAKNDIPGAVVQCEELEILT---AATPFGEK--DEEWMKIHLTLLLVLDDVNN---GRHLWRRLPASAKAGGGELSDLWGVGKCLWKRDIQGAQAALRGREWS-PPIAGYVSLLRDRLWERQLDIISRGFNSLPLERVATLMGSSVDEAEKECAKEGWEVQ--AGTVKPKPRAKTET 531
            D ++   ELV+      A+   ++LE+L    + +P GE    EE              +NN    + LWRR P+S K+   +L  LW VG  L +R I  A  AL GR+W  P +A  V  L+  + ERQ+ + SR + SLPL  +A  +G+    A + C  +GWE    AGTVKP+P A T T
Sbjct:    6 DSKRRYLELVSTTKFKEALPVLQDLELLRLEQSLSPGGEDMWGEEXXXXXXXXXXXXXXLNNLAEAKLLWRRSPSSFKSQEADLPALWAVGALLIQRHISQAYIALDGRQWRRPAVAALVPHLKAAIKERQMQLFSRAYRSLPLAAMAEALGTDQSAALRACRAKGWECDESAGTVKPRPPAATTT 191
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BLAST of mRNA_A-nodosum_M_contig1005.10.1 vs. uniprot
Match: A0A7S2SPW3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPW3_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.370e-16
Identity = 65/197 (32.99%), Postives = 98/197 (49.75%), Query Frame = 1 
Query:   22 VQELVAKNDIPGAVVQCEELEILTAATPFGEKDEEWMKI-HLTLLLVLDDVNNGRHLWRRLPASAKAGGGELSDLWGVGKCLWKR-DIQGAQAALRGREWSPPIAGYVSLLRDRLWERQLDIISRGFNSLPLERVATLMGSSVD-EAEKECAKEGWEV-QAGTVKPKPRAKTETILSTTPDYLNKMARHITFLERQN 600
            ++E +   D   A    EE+E+  A  P  +     +    L L L+L+D++N RHLWRR+  S K  G EL  +  V   LW+R DI GA   LRG EWS  +    + LRD L +RQL +  + + S+ L      +G + D +    C  +GW V +AG ++   R      L    + L  ++ H+T LERQ+
Sbjct:   36 LEEKLRAGDFQAARPIIEEIELRDADAPSTDPRIPIVYAKQLFLYLILNDMHNARHLWRRIDDSCKTDGSELVKVHAVASLLWQRSDIPGAFNLLRG-EWSETLKPLATALRDGLQKRQLSLFEKAYTSVTLSTATAALGFTSDADTAAACTAQGWHVDEAGVIRVTKRPAAVKELQGF-EQLEMLSHHVTLLERQS 230
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BLAST of mRNA_A-nodosum_M_contig1005.10.1 vs. uniprot
Match: A0A3R7J8J7_9STRA (COP9 signalosome complex subunit 8 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J8J7_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.500e-16
Identity = 57/182 (31.32%), Postives = 96/182 (52.75%), Query Frame = 1 
Query:   73 EELEILTAATPFGEKD----EEWMKIHLTLLLVLDDVNNGRHLWRRLPASAKAGGGELSDLWGVGKCLWKRDIQGAQAALRGREWSPPIAGYVSLLRDRLWERQLDIISRGFNSLPLERVATLMG-SSVDEAEKECAKEGWEVQAGT--VKPKPRAKTETILSTTPDY--LNKMARHITFLE 591
            EELE++ AA            ++   +L ++L+  ++N+ R LW+R+   AK    EL  +WG+GK LW R++ GA AA+  REWSP +   +  LR    E   +++SR ++++ +  VA  +G +  ++A + C    WEV A    + PKP A      ST  D   L+ +++ +  LE
Sbjct:   40 EELELVAAAATSAPDPAALTSDFYASYLLIVLLSQNLNDARFLWKRISPEAKHNSEELQAVWGIGKALWDRNLAGAYAAM-DREWSPSLQELIEALRTSTRESTAELLSRAYSTISVNDVALALGFNRPEDACQYCVSLNWEVSAADQLILPKPLANVRRGPSTVVDLNQLDTLSKSVLHLE 220
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BLAST of mRNA_A-nodosum_M_contig1005.10.1 vs. uniprot
Match: UPI001C202F05 (COP9 signalosome complex subunit 8 n=1 Tax=Aricia agestis TaxID=91739 RepID=UPI001C202F05)

HSP 1 Score: 84.0 bits (206), Expect = 3.370e-15
Identity = 47/183 (25.68%), Postives = 89/183 (48.63%), Query Frame = 1 
Query:   49 IPGAVVQCEELEILTAATPFGEKDEEWMKIHLTLLLVLDDVNNGRHLWRRLPASAKAGGGELSDLWGVGKCLWKRDIQGAQAALRGREWSPPIAGYVSLLRDRLWERQLDIISRGFNSLPLERVATLMGSSVDEAEKECAKEGWEVQAG--TVKPKPRAKTETILSTTPDYLNKMARHITFLE 591
            IP     C +LE      P G          L + L  +D+ + + LW+R+P +      E++ +W +G+ LWK+D  G   AL+G  W+ P+A  +  L +++     ++I R ++S+ L+ V  + G + D   +      W +     T++P P++    + +++ D L K+   +TFLE
Sbjct:    2 IPNYDQFCADLEKQELEAPNGIPSPTVYAQLLAIYLYQNDLCDAKFLWKRIPQNVSTSNPEIAAIWAIGQKLWKKDFPGTYQALKGYNWTEPVAPIIEALEEKVRASVFNLIGRSYSSISLDTVVLMTGLNKDAVLQITRDLKWTLNEDGVTLQPTPKSLPAPLQTSSEDQLFKLTDFVTFLE 184
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BLAST of mRNA_A-nodosum_M_contig1005.10.1 vs. uniprot
Match: A0A7S2GZT5_9STRA (COP9 signalosome complex subunit 8 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GZT5_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 4.340e-14
Identity = 60/194 (30.93%), Postives = 96/194 (49.48%), Query Frame = 1 
Query:   28 ELVAKNDIPGAVVQCEELEILT--AATPFGEKDEEWMKIHLTLLLVLDDVNNGRHLWRRLPASAKAGGGELSDLWGVGKCLWKRD-IQGAQAALRGREWSPPIAGYVSLLRDRLWERQLDIISRGFNSLPLERVATLMGSSVDEAEKECAKEGWEVQAGTVKPKPRAKTETILSTTPD---YLNKMARHITFLE 591
            E +A+ D   A+  CEELE  T  A     +    + +  LTL L+ +D++N RHLWRR+    K    ELS +W +   LW R+ I     +LR + WSP IA  +    + + +RQ +++S+ +  + L    T +    DE  + C K GW+        +P   T  +   + D   +L+ +A+HIT LE
Sbjct:   17 EKIAERDFATALRNCEELEFETIGAQATDAQAHARYCR-QLTLYLITNDMDNARHLWRRIGNDFKGVESELSAIWSIASNLWHRNNIPMVFKSLR-QTWSPEIAPLMQKFIETIRDRQFELLSKAYMKVTLAATITELSLPEDEVVEYCVKRGWKFDPTIRVFEP--STPPVKDVSFDGIQHLDYLAKHITSLE 206
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BLAST of mRNA_A-nodosum_M_contig1005.10.1 vs. uniprot
Match: A0A2D4BXT1_PYTIN (COP9 signalosome complex subunit, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXT1_PYTIN)

HSP 1 Score: 78.2 bits (191), Expect = 9.360e-13
Identity = 45/162 (27.78%), Postives = 85/162 (52.47%), Query Frame = 1 
Query:  121 EEWMKIHLTLLLVLDDVNNGRHLWRRLPASAKAGGGELSDLWGVGKCLWKRDIQGAQAALRGREWSPPIAGYVSLLRDRLWERQLDIISRGFNSLPLERVATLMGSSVDEA-EKECAKEGWEVQAGT--VKPKPRAKTETILSTTPDYLNKMARHITFLERQ 597
            E++   +L ++L+  ++N+ R LW+R+P+  K     L  +W +GK LWKRD   + AA+  R+W   +   ++LLR+   E   +++   ++++PL+  A  +G   + A    C    W+V   T  + PKP  ++   LS+    L  ++ ++  LE Q
Sbjct:   71 EQFYASYLVIVLLAQNLNDARFLWKRIPSETKQLSDLLPSVWSIGKALWKRDFAASYAAMN-RDWPEGVRELIALLRESTRESAAELLGVAYSTIPLKEAAVALGFDDESALVAYCKSLEWDVSLETKLLHPKPLPRSAPELSSL-QQLESISNYVLHLEEQ 230
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1005.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D8LMY2_ECTSI2.440e-7259.71CSN8_PSD8_EIF3K domain-containing protein n=2 Tax=... [more]
A0A6P8Y321_THRPL1.960e-2334.07COP9 signalosome complex subunit 8 n=1 Tax=Thrips ... [more]
A0A7S2FNN9_9STRA3.910e-2232.98Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6J1T3B4_FRAOC1.480e-1932.96COP9 signalosome complex subunit 8 n=1 Tax=Frankli... [more]
A0A7S2XW30_9STRA3.240e-1735.48Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2SPW3_9STRA1.370e-1632.99Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A3R7J8J7_9STRA1.500e-1631.32COP9 signalosome complex subunit 8 n=3 Tax=Phytoph... [more]
UPI001C202F053.370e-1525.68COP9 signalosome complex subunit 8 n=1 Tax=Aricia ... [more]
A0A7S2GZT5_9STRA4.340e-1430.93COP9 signalosome complex subunit 8 n=1 Tax=Dictyoc... [more]
A0A2D4BXT1_PYTIN9.360e-1327.78COP9 signalosome complex subunit, putative n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1005contigA-nodosum_M_contig1005:87173..90503 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LMY2
Preferred nameCOPS8
PFAMsCSN8_PSD8_EIF3K
Model size1407
Max annot lvl2759|Eukaryota
KEGG koko:K08244,ko:K10655,ko:K12181
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000338,GO:0000715,GO:0001101,GO:0001654,GO:0001745,GO:0001932,GO:0001934,GO:0002009,GO:0002165,GO:0003006,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006974,GO:0006996,GO:0007154,GO:0007165,GO:0007250,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007399,GO:0007423,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0008150,GO:0008152,GO:0008180,GO:0008233,GO:0008237,GO:0008285,GO:0009314,GO:0009416,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009753,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010387,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0016043,GO:0016787,GO:0019220,GO:0019222,GO:0019538,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0030154,GO:0030162,GO:0030182,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031647,GO:0031974,GO:0031981,GO:0032147,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033554,GO:0033674,GO:0034622,GO:0034641,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0035556,GO:0036211,GO:0038061,GO:0042127,GO:0042221,GO:0042325,GO:0042327,GO:0042461,GO:0042742,GO:0043085,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043549,GO:0043687,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045859,GO:0045860,GO:0045937,GO:0046483,GO:0046530,GO:0048468,GO:0048471,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048563,GO:0048569,GO:0048583,GO:0048584,GO:0048592,GO:0048609,GO:0048666,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048749,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051276,GO:0051338,GO:0051347,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0060429,GO:0060562,GO:0060625,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090596,GO:0098542,GO:0140096,GO:1901222,GO:1901224,GO:1901360,GO:1901564,GO:1901700,GO:1902531,GO:1902533,GO:1903320
Exons5
Evalue3.6e-60
EggNOG OGsKOG4414@1|root,KOG4414@2759|Eukaryota
Ec32 ortholog descriptionCOP9 signalosome, subunit CSN8
Ec32 orthologEc-02_004100.1
EC2.3.2.27,2.7.9.4
DescriptionCOP9 signalosome assembly
Cds size480
COG categoryS
BRITEko00000,ko01000,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1005.10.1prot_A-nodosum_M_contig1005.10.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1005 87971..89862 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866361.0963917-UTR-A-nodosum_M_contig1005:87172..879701680866361.0963917-UTR-A-nodosum_M_contig1005:87172..87970Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1005 87173..87970 -
1680866361.149764-UTR-A-nodosum_M_contig1005:89862..899011680866361.149764-UTR-A-nodosum_M_contig1005:89862..89901Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1005 89863..89901 -
1680866361.1594899-UTR-A-nodosum_M_contig1005:90413..905031680866361.1594899-UTR-A-nodosum_M_contig1005:90413..90503Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1005 90414..90503 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866361.109463-CDS-A-nodosum_M_contig1005:87970..881191680866361.109463-CDS-A-nodosum_M_contig1005:87970..88119Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1005 87971..88119 -
1680866361.1204069-CDS-A-nodosum_M_contig1005:88669..888571680866361.1204069-CDS-A-nodosum_M_contig1005:88669..88857Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1005 88670..88857 -
1680866361.131663-CDS-A-nodosum_M_contig1005:89437..895391680866361.131663-CDS-A-nodosum_M_contig1005:89437..89539Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1005 89438..89539 -
1680866361.14102-CDS-A-nodosum_M_contig1005:89821..898621680866361.14102-CDS-A-nodosum_M_contig1005:89821..89862Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1005 89822..89862 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1005.10.1

>prot_A-nodosum_M_contig1005.10.1 ID=prot_A-nodosum_M_contig1005.10.1|Name=mRNA_A-nodosum_M_contig1005.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=160bp
MKIHLTLLLVLDDVNNGRHLWRRLPASAKAGGGELSDLWGVGKCLWKRDI
QGAQAALRGREWSPPIAGYVSLLRDRLWERQLDIISRGFNSLPLERVATL
MGSSVDEAEKECAKEGWEVQAGTVKPKPRAKTETILSTTPDYLNKMARHI
TFLERQNQG*
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mRNA from alignment at A-nodosum_M_contig1005:87173..90503-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1005.10.1 ID=mRNA_A-nodosum_M_contig1005.10.1|Name=mRNA_A-nodosum_M_contig1005.10.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3331bp|location=Sequence derived from alignment at A-nodosum_M_contig1005:87173..90503- (Ascophyllum nodosum dioecious)
GCAGAAGATTTGAGGCAGAATGTCCAAGAACTCGTGGCGAAGAACGACAT
CCCTGGCGCTGTGGTGCAGTGCGAAGAGCTGGAGATCCTTGTAAGTCTCG
AAAAAAAATTGAAAAGAGAAATTTGGACACGTGCACACGTGCCGAGCAAT
CCCGGGGTCTTTGGAAGCCCTTGTGTGAATGAAAGGATACAGTTGATAAA
TTGATGCGCACCAGAACCGCAGTTGTACTGGCCAGAGCTCTGTGCTATTA
CGTTTCGGCGAGGAAAATACTGCAGTCTTTTGGTCTCGTCTTGCCCTGTT
GACCCAAGAAGGATTCAAAGAGACGGTATTATATTACGATCGTCTCTAGG
GCGTAGAAAACAATACTTCGGTACAAAATTATTACCCACCAGTAGGACTC
GTCCCTCTCATGATCAGGAAGTCAAGTCATGAAGGTGTCAGGATCCCCGC
GACCTCTTCCAGCACCTGTCCTTGAATTCCACAATTTATCGCAGCCACAA
TGGCCCGATGAGCTAGCTCTAGCGCTCCGCAGCACACCGTGAACTACTTT
ACTGGTGTGTCGACTGAGTTGATGTGCTCTCTCTTTCTTTTTTTGCTGGC
AGACGGCCGCCACCCCTTTCGGAGAAAAGGATGAAGAGTGGATGAAGATC
CACCTCACGCTGCTGCTGGTACTAGACGACGTGTGAGTGTCTTTGCATTA
GCGGGGTACCGCAGGAAAGCCTTTGTAACAACTCCCACCGTGCACCCTGA
GTTGTTGCGTGAAACGGGCATTGCCTTTCTGCCAAGAGATAGATGCCTAC
GTTCTCTGGGAAAGTGAACCTCACGTCTTACATGGTTGGCTTTCAAAAAC
GACCCTGTGTAAAGAACCCGCTGGTGTAACGTCATCGTTTCTGGTGAACC
AAACGCAAATTTTCCTTGCCGTCGACCCAAACCCTCGAACCTGACTTGCT
TCCGCCCTCGCCAGGAACAATGGTCGACACCTGTGGCGAAGACTCCCGGC
CTCAGCAAAGGCGGGAGGGGGCGAGCTCTCGGACCTCTGGGGCGTGGGCA
AGTGCCTGTGGAAGCGGTAAGTGACTCGAGCAGCAACGCCCCAGCACCCT
TCGATGCCCCCACCGTCGAGTAACCGTAATGGAGGGAGAGACAGCCCGCA
AGAAGATATAAAAAAACTCTCGAATGTGGAAACATTACTCTGGCGCAAGT
CAGCCGCGCTTGGAAGAATTATTAACATCTCTCAAGGTGTGCGATGTTTG
TTTGGTGTTCTTGAGTGCTTCATATCCGCATGAGAAACATCTAAGTAGGG
GCCGCTGACATTCCGCCATCGTTTAAGAGGCCGTTTGCTGCCTCTGGAGC
AGGAGAAGGAGAGGCGCTCCTCCGACCTCGGCGAGGATCGGCCAATGTCG
AATCGTACCGTTACAATTATCGCATAAAATAGTTCACTATTTCTCTTGGC
CCCAAATCCTTTTATCAGAGCCTACCTCTAGCCTCCAGAGATCCAAAGCT
TCCCGATCCTCTCTCGCAGTGCCGTGCCGACACACAAGATCACAAATATA
CCACCATAAGGGAGTCACCCCTCACTCTACGCTTCGTTTGGATCGACCTT
TTCCTCTGTCGCGTTCACCGCCCTGCCGCCCCCGACACGAAAACAGCGAC
ATACAAGGCGCGCAAGCCGCACTGCGAGGCCGAGAATGGAGCCCTCCCAT
CGCTGGGTACGTGTCTCTTCTGCGAGACAGGCTGTGGGAACGACAGCTCG
ATATAATCTCCAGGGGCTTCAACTCCCTGCCCCTGGAGCGGGTGGCGACC
CTGATGGGCTCCAGCGTTGATGAGGCTGAGAAAGGTACAGTTAAAGCGTG
TCGCACTGCAGCACTGTCGCAGTTTTCAACGAACTATGCTATTGTAATGT
GTAATTTTTCGTGTGACTTGGGTGTCAATGAGGCGTCCTCGCTTGTGCTT
GTATGGTTCCGTGCCCCGTTCCCTTTGCACGTGTGTGTGATCGGTAAGTT
TTGCTGGGCGAGGGTGGGAGGGCGGCCGGGAGTTATAACTAGGTAAGGTC
GGATCTGTCGCCCTTACAGCGCTGTAAAATTTGGAAAGGGTGTACTTATC
TTGGGTGGTTTGCTCATCCTTGTTTCGTTTCGCGGGGTGCGTCGTCGAGG
GGAGGCGATGTAGCGCTGGGCAAGAGCGAAGGATCTCGGCATCAAGAGCC
GTTTTGAGCAGCGTCTTAATATGCTCCCTGCTCTTCTGTCGTAGCTTTAG
TAGCCCCGACCTTGTCTCAAAGGAAATTAAAACGATAGACTGACGAGAAT
GTCCAGATGCACACACCTAACCTCAGTTTTCCCCCGATTTGTTTTTGGGG
GTTGTGGGGTTTTGGGATGGGTAAAAAAAAGCAGAGTGTGCGAAGGAGGG
ATGGGAGGTGCAAGCCGGGACAGTGAAGCCCAAGCCTCGGGCAAAAACCG
AGACGATTCTCTCGACTACACCGGACTACCTCAACAAGATGGCTCGGCAC
ATCACTTTCCTTGAGCGTCAGAATCAGGGGTAACAGCGGCGCTCAAAGAA
AGTCCGCGTTACGCACCTTTCGTTTTTTATTTTGCGCTAAATGAAAATCT
TGAAAAAATCATTTTATTTCTTTTGTTTTTGCCTTCACAAAAACGCGTGC
TTGTTCGCGTTGGAGAGAGGGAGCTAAAGTAGCCGTCAACAGAAGAGCAT
CAACACAATGGCCGTATTTGTCTTTCTTCTGTTTATGACTGTTTTGGAAG
CAGCGCCCTCTTTTTTGGGCGTGTGCGTGGTGTGTTTTCCGTGAAGGACA
CTCATACTGGACCTCCGAGTCTTTTTGAAGATCTCATTTCACGGGAAAGA
AACCACCAAAACCCAAGTGCGCGTTTCGGCATCGATACACCCATTAATCC
GTTAGCTTTTTATGGCGTGTATATTGCAGTGCTGCCGGGTTGCAATAATA
TGTTGGCTGGTGATGTAAGGGGGGCAGTTTAAAAAATACAAAAACGCGGG
ATCTCGCTAACACCCTTGGGCTACAGCAGCACTTGTGTACTGGGGCTACT
AGACAGCCGGCCGGACAGTGGAGGCAAGGAGACGTCACAGGTCCAAAGGT
AAGGATCAAACTTGCTTTGTGTGTTTTTGTTAGTTCATTTAGTGTTGGTT
GGTGAGTCATTTTGCCCACCTCCCCATCACCTGTAGAACGCTTGATTACT
CGGGACTCAGACCACACCCCAGTTCCACAGCACGTAGACCCGTGCACACC
AGGCAATTTCGAGAGACCTGACACAGAAGACACTTAGCACAACGTTCTAC
GTAGAGGTTGAGTGTACAGCCGTTTCCGTCG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1005:87173..90503-

>mRNA_A-nodosum_M_contig1005.10.1 ID=mRNA_A-nodosum_M_contig1005.10.1|Name=mRNA_A-nodosum_M_contig1005.10.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at A-nodosum_M_contig1005:87173..90503- (Ascophyllum nodosum dioecious)
ATGAAGATCCACCTCACGCTGCTGCTGGTACTAGACGACGTGAACAATGG
TCGACACCTGTGGCGAAGACTCCCGGCCTCAGCAAAGGCGGGAGGGGGCG
AGCTCTCGGACCTCTGGGGCGTGGGCAAGTGCCTGTGGAAGCGCGACATA
CAAGGCGCGCAAGCCGCACTGCGAGGCCGAGAATGGAGCCCTCCCATCGC
TGGGTACGTGTCTCTTCTGCGAGACAGGCTGTGGGAACGACAGCTCGATA
TAATCTCCAGGGGCTTCAACTCCCTGCCCCTGGAGCGGGTGGCGACCCTG
ATGGGCTCCAGCGTTGATGAGGCTGAGAAAGAGTGTGCGAAGGAGGGATG
GGAGGTGCAAGCCGGGACAGTGAAGCCCAAGCCTCGGGCAAAAACCGAGA
CGATTCTCTCGACTACACCGGACTACCTCAACAAGATGGCTCGGCACATC
ACTTTCCTTGAGCGTCAGAATCAGGGGTAA
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