mRNA_A-nodosum_M_contig114.16.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig114.16.1
Unique NamemRNA_A-nodosum_M_contig114.16.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig114.16.1 vs. uniprot
Match: D8LQU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQU6_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 4.040e-16
Identity = 50/122 (40.98%), Postives = 64/122 (52.46%), Query Frame = 1 
Query:  400 VIADVLVLCPTQDFLFLGSVGKAWKTAWVAVGRAKNTSIGLAAATQARTEWALDDSSFWGVARRRGGVFCLTARAGNLGGLQAAAKVCGGEWNRQDGARQVIELAAESGHLNMIRWAREQGC 765
            V A V  + P +D    G     W++ W A GR K TS+ LA AT AR E  +   SF       GGVFCL A AGNLGG+Q AA+  G  W        +   AA +GHL+++ WA+  GC
Sbjct:   56 VRAVVFRIPPVKD----GRRASNWRSTWEAEGRPKKTSVSLATATNARVETIMGQPSFHAATGHLGGVFCLAASAGNLGGIQTAARESGDGWKSLGPVVMMTAEAASAGHLHILEWAKSSGC 173
[Close]
BLAST of mRNA_A-nodosum_M_contig114.16.1 vs. uniprot
Match: A0A6H5JT58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT58_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 2.050e-7
Identity = 30/66 (45.45%), Postives = 38/66 (57.58%), Query Frame = 1 
Query:  568 SFWGVARRRGGVFCLTARAGNLGGLQAAAKVCGGEWNRQDGARQVIELAAESGHLNMIRWAREQGC 765
            SF    R  GGVFCL A AGNLGG+Q AA+  G  W        +   AA +GHL+++ WA+  GC
Sbjct:    5 SFHVATRHLGGVFCLAASAGNLGGIQTAARESGDGWESLGSVVMMTAEAASAGHLHILEWAKSAGC 70
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig114.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQU6_ECTSI4.040e-1640.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JT58_9PHAE2.050e-745.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig114contigA-nodosum_M_contig114:349670..355523 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1950
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionAnkyrin-repeat protein
Ec32 orthologEc-24_002340.1
Cds size1212
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866545.1482294-UTR-A-nodosum_M_contig114:349669..3500381680866545.1482294-UTR-A-nodosum_M_contig114:349669..350038Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig114 349670..350038 -
1680866545.2292016-UTR-A-nodosum_M_contig114:351250..3512661680866545.2292016-UTR-A-nodosum_M_contig114:351250..351266Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig114 351251..351266 -
1680866545.299326-UTR-A-nodosum_M_contig114:355170..3555231680866545.299326-UTR-A-nodosum_M_contig114:355170..355523Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig114 355171..355523 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866545.1589215-CDS-A-nodosum_M_contig114:350038..3512501680866545.1589215-CDS-A-nodosum_M_contig114:350038..351250Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig114 350039..351250 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig114.16.1prot_A-nodosum_M_contig114.16.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig114 350039..351250 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig114.16.1

>prot_A-nodosum_M_contig114.16.1 ID=prot_A-nodosum_M_contig114.16.1|Name=mRNA_A-nodosum_M_contig114.16.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=404bp
MFNPLAARIDVIADVLVLCPTQDFLFLGSVGKAWKTAWVAVGRAKNTSIG
LAAATQARTEWALDDSSFWGVARRRGGVFCLTARAGNLGGLQAAAKVCGG
EWNRQDGARQVIELAAESGHLNMIRWAREQGCPWGEQTCASAALGGHPEI
LRWLKEQGCPWDKLTCQFLAKDGHLEVLKWAREMCCPWDESTCHAAAEGG
HLELLKWARSQDCKWDAETCSRAALGGHLDVLQWLVRQNCPMGNHACSRA
AAEGGHLGVLNWLKSKGRWSAWDACSSAASGGHLEVIKWARQQGCDWDEA
TCYSAAGGGHLEVLKWVRSEGCPWNESTCDYAARGGHLEVLQWARMQGCP
WDEVTSVYATEVGHLRMLKWAVEQGCPWNRETCLLAAEKTGDGELVSWIK
QQG*
back to top

mRNA from alignment at A-nodosum_M_contig114:349670..355523-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig114.16.1 ID=mRNA_A-nodosum_M_contig114.16.1|Name=mRNA_A-nodosum_M_contig114.16.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5854bp|location=Sequence derived from alignment at A-nodosum_M_contig114:349670..355523- (Ascophyllum nodosum dioecious)
CTGTAGTGCTCTTTTTTACCTGCTGCTTGCTGCTGAACTCGGCATTCATT
CGTATTATCAGTTCAGCTCTAGGCCACCCAACCCCATTGGCCCATCGGGA
ATTTCATCTTTTCCATCGCGGTTGGTCGTGCACACGTTCGTACCGAGTTG
CCCTGGCGACGATTCCCCTTTTTGACAACATCAAGTGCGAGGTGCGAGTG
AGTCCACCGCGTCTCCGCCTTCTCTATCATCGTATCAATCATCAAACAGC
GGCACGTGCATCTACTATCCTGCCGCCGACGAGTCGAAGTCTTGGCTACT
TTTTGGTGGATCGAATCGAACTGGCAGCAGCAGGCCTGGCCACACAGCAG
CTGGTGAGATGGCATGAAAGGGAGAGTTGTATGCTGGGCATGATGAACTT
GTCCGCAAGTCCCCTAGACCCTTATCTGAATCTGCGAGATACGCTCGTCG
CGAGTTGCGATGGGGAGCGACATACTTGTACAACAATGCACGGGACTAAC
AATATATGTACAACTTAGTGCTTGTAAACAGTACAGTGATTTATTTCCCC
GGAGCATTACGTACTGCACACACTCGATTTTTTTCAGTCGTTTTTCCTAC
CAAAAAAAAACAGTTTGAACCCAGCGCTCTGGAGCAACTCGTTGTCGTGC
ATGGCAACCGACTGCCGAGTCGGACAAGGATGCCAACACACGGTGTACGT
GCAGTTACTTGGCGGATCACTTCAGACTTTACGCTGAATCTCGTCTACGA
CCCGTGGCCTGTCAGGGTTTTGGGCTGCATCGATTTAATGTAATACCTCT
TCAGGGGGATCCAGTTCCGTACCCATAAATATCGGTAGACTGCGAATTAT
CACCGAACCGAGAGGCAGATACGTGTAGTAGCTCTAGGCTCTACGAGCAG
AAAAAATGGAATATTACCTGGTTGGAATTTCAGTGGCTGATGATCTCGGG
GCTGATAACTGCTACCGTTTAGAATTTCTCACATTTGATGTGTGTTTGTG
TGTGTGTGTGTTGTGTGTTTTCTTCCTATTTGTTCTGGACGTCAAGTTCG
TTGGATGTACCAGCCGGGGTCACACAGGAGGAAGGTCACACATGATTTTT
TATCCACCTTCCTTCTGCGGTGCATGCCTTTATTTTTCTCGCGAGAAGGA
TTCAGCCGTTCATTTCCCTCGTCGACCATGAAGTCGAATTTTGTGTACTA
ACGATTTAACAGTTCTCCACTTGTTGGAGAAAAATCCCGGTTGCCGGGAT
TCGAACTCACGTCCCAACGTGTCAGAAGGTTACGAGGTTACCAACTGAGC
TATCGGGGCGACCGGTCATTTGATGCAAGAGAATAACCGCAGCGCGACAA
CTATCGCTATAATACTACTGTGTACTGTAGTGTAGTGTACTGCCGTAACA
AAAATATATTTAGAATCTCGTGTCGATGACCTTTACTTTGTCTCTCTCCT
TGGTTTCCGTTGAAAATATCTGGTGTTACAGCATCATACCATCAAGGTCA
TTAAGATATAATAACACGGTCCAACAAGGCGTTGACTGAGATCGCCGCAT
CTTCCGCTGTGACACACACGTCGAAGGTGGCGATGCCCTTACTTAGCTGT
CGGCCTCCCTCATAGCGCTTCGAGCCTTTGTTATTGTTAGTACTGATTAC
TACCTGGTATTATATTAGTCCCCCCTTCTAGAATGCTACTCCGAGAAATT
GTCCGAATGGCTTAAAAAATACACGTCTTAAACTGGGACACGTCTCGTGC
CTTCTCCCTCCGAAACCTGGTTTCGGGGTATGAGTGTGGGAAGGTCTTTC
CGGCGGGTGTAGGGCCGGGCTCACCCTCAAGAGATGCAGCCAACTGGCTG
CCTTCGCGATTCAGCCTGTCGGTTGAGACGCGGCGGCGGTATGGTTGGCT
GAGGATGATGGTGTTCCCAGGTGCGCGCCTCTTCCGAGCCCCAATTTGGT
GCCCTTCGGGAGGGTGGCGGCACGCGAGAGGCAGGGAGCACTCTCGCGGA
GAGCCTGGTAGTGCTCTATCGGGTGGGTACGCACCAGATTCGGCGAAGGC
GGAGGGCAGCTCGATCGTCGACCAGCCAGGGGAGGGCTGAACCCCTGTGC
GCGAGAATCACAGGCTTGAACCGGGAGGTTTCTGAGGGGAAAGCTGATGT
CTGACCACGGTCATTTTTCTTCCTACGAGGGCCACAAGGAGCGACGAACG
GGCAAGATTCGTGGGGCTTTTTCAAGGATGCACAGGGCTTTGGACGGCTG
GATGCTGGCTCGAGCCCTGGCTTCACCAGCTCAAGGCCTCCACCACCATG
GACCTCGGTATTTTAATTTTTCTCATTTCTGTACAATGTGTGGCCTTGAG
AAACTTGGATTTGTTGATCAAAACTGGTTGGAGCGTAATTTTTCCGTTTT
TTTGCTGAGAACGCTGGTCGTGGGTAGGCGACAACATTCCGAGTCGATCG
AGGTTGCTCTCGATATGGAGTAAGGAGGTTTGATTAGCCGTTTTGATATT
GGTCGGTGCCATTGCTTGTAGAGCCGCATAACTTTCTGTCGCGATTTGGA
TCCCTGTTGGTCTGAGTAGCGGGTTGTCACCATGATGTGACCCGTTGACC
TTGGTACCTCCTTGTGACCACAAGCGGGATTGGCATTTGATAGGTCTATG
GCTGACTTGTTGTGTCACCGCAGTTTCTTCAGTTGCAAGGACAGAACGCT
GAATGTGTGAATCAACGACAACAACAACAACTAACAACGACTCTTCAATC
AACCATCAAACCCAACTACAGTACTGTACTATACTGTAGAAAACTAGCTC
CTTCCTTCACCAGCCCGTATTTCGGTAAGAATATACTTCGTACATAGTAA
TGACATCCTACAGCGTACGGATATCATATGTAGTAATGTGTGTGCGGTCA
TTGACAGATGGCAGAGAATGGGTCAACCGGGCATGGTTGTCAATCCTGCT
CGTGTGGTCAGTTGATAACAATATAGAAACTGGATTCTGTGAAATACAAA
GTAGATCATTCCGACGACCACTCCATGAGCTCAACCATAAATGCGCAGTA
TGCCCATGAGGCTGCTGCGTTGGTCGCGCACGATCCGACGTGGGCGCAAC
CATGTACGCTCTTGGCTTAATGACGTCGACTACTAATAAGCTCCATCATT
TTAGAGTGCCTGCAGCTGGAATATAATGGCAGTAGTTGTTGCTGTTGTTG
TTGTCTTCACATTAAAAACCGTTCCGATCTCTGCTCAGTACCTTCTAACA
TCCGTACTGGTCCAACTGACGCGAGAACGCCTTCCGTGGTCACAGGCTAA
CTACCCCCAAAAGGGTACGTACCTATTATTACGGAAGATCAAAGAGAAAT
AAAATGACCCAGAAAAAAAGTCAACACACACGCGATAATAGGGAAAAAAA
CAGAAAAATAAGGCTCCAGACAGTCAGACGTCGCAGGCGACATGTCGGAC
GAAGGAGATAGATAGAGCCCATCGCCCCCACTCGACACGCGAGGCCAAGC
AAAATAAAACAAACAAGAAGAATCAAGGATCAGCAATCAAGACAATAAAA
TCGCACCATTCTATCCTAGCCTTGTAGCCCTAACCGCCGGTACTTTTAAC
ATGCCCACTTTATACCAATAGTGGGTGTGGGAAAGAGAGGCGAATATTAA
TTGGTCCATGGTGATCTGCCAAGGCAGCACCCGTTCGGAACTACCTTGAG
GTTTACTGGCCCTGTGCCGGCGGACTCTCGGCAGTGAACGCCATCGGTAC
GCAATTGCGTGACCCGATAAACTCGGGACTGACCCGGTGGCGTAATGGCG
GTTTCATAAATGGACGCCGCCGCGGAACTCGGGAGGGATCCCGTAAGTAA
GCACCAGATTCAGACTGAGTATGGAGATGAGCAGGCTGACGCGGGACGGG
ACGGCTGAACCCATCTCGCGAGACCAATTTCTTAAGCACGCACGGGGACA
GAGGAATATTATTTTCCCTGTTCAGCTGACCACGAGCAGGATTGGCAGCC
TTACCCGGTTGATCCATACTCTGCTATATGTGATGACCATACATACATAC
GTACATACTAGCCCGCGGTGTATTCACCGCCGGGTTTGCACCGGCCAAAC
CATGTAATACTTGTTATCATTATATATTATGAGATTGTTGAGAAGGTCCA
ACGTCCTTGACTCCGTCTATCCATTCAATTATTTATCGTCGAGTCCCAGC
AGGGCTGAATGCATTCCTTACAAAAGCTTATTGTTTTTGCCCGTGCTATC
ACTTCAGGACTGCCGGTGCGACGATGTTCAACCCATTGGCTGCCCGGATC
GATGTGATCGCCGACGTCCTGGTTCTGTGCCCTACACAAGACTTCCTGTT
TCTTGGCAGCGTCGGCAAGGCTTGGAAAACGGCTTGGGTAGCCGTAGGCC
GGGCGAAAAACACGAGCATTGGCCTGGCTGCGGCAACCCAGGCACGGACA
GAGTGGGCACTCGACGACTCTAGTTTCTGGGGCGTGGCAAGGCGCCGTGG
AGGTGTTTTCTGTCTGACCGCTAGGGCGGGTAACCTCGGAGGGCTTCAGG
CGGCAGCGAAGGTGTGTGGAGGTGAATGGAACCGCCAAGACGGGGCGCGG
CAAGTGATCGAGCTCGCTGCGGAGAGTGGGCACCTTAACATGATTCGGTG
GGCGCGGGAACAGGGGTGTCCCTGGGGCGAACAAACTTGCGCCTCGGCGG
CATTGGGAGGACATCCAGAAATATTGCGCTGGCTGAAAGAGCAAGGCTGT
CCCTGGGACAAGCTGACGTGCCAATTTCTGGCTAAGGACGGACACTTAGA
GGTGCTCAAGTGGGCCAGGGAAATGTGTTGTCCGTGGGATGAGTCCACGT
GCCACGCTGCGGCAGAAGGGGGCCACCTAGAACTACTTAAATGGGCGAGG
TCACAAGACTGCAAGTGGGATGCAGAGACGTGCAGCAGAGCGGCGTTGGG
CGGGCATCTCGATGTATTGCAGTGGCTAGTGAGGCAGAATTGCCCAATGG
GTAATCACGCCTGCAGTCGTGCGGCAGCCGAAGGCGGTCACCTGGGAGTG
CTCAACTGGTTGAAATCCAAGGGCCGTTGGAGTGCTTGGGACGCCTGCAG
TTCGGCGGCCTCGGGTGGGCATTTAGAAGTTATCAAATGGGCGAGGCAAC
AAGGCTGTGACTGGGACGAGGCAACTTGCTACTCAGCCGCCGGTGGGGGC
CACCTGGAGGTCCTTAAGTGGGTGCGCTCGGAAGGATGTCCTTGGAATGA
GAGCACGTGTGACTACGCAGCGAGGGGTGGCCACCTAGAGGTGCTACAGT
GGGCGAGAATGCAGGGGTGCCCGTGGGACGAAGTGACCTCTGTGTACGCC
ACCGAAGTTGGTCACTTACGCATGCTGAAGTGGGCCGTTGAGCAAGGGTG
CCCTTGGAATAGAGAGACGTGCCTCCTCGCTGCGGAGAAGACGGGGGACG
GAGAGTTAGTCTCGTGGATCAAGCAGCAGGGTTGACGTCCATTATTAACA
AGACATATTCGTGCTGTGATGGAGAGTTAGTCTCCTCGTGGATCAAGCGG
CAGGGTTGACGGACATCATAAACAATATATTCGTGTTGTGGTGGAGAGTT
AGTCTCGTGGATCAAGCAGCAGGGTTGACGTACATTATAAACAAGATATT
CGTGTTGCATACTGCACCGTGCACGCGACCACGCCACATCCTACCGTCGA
TTACCTCGTTGTCAACGCACACCTCGATGATAAGTGATAGGTTCGGATAG
ATGGCCAGCCAGGTCGGGTCGGGTGATGAAATCATCATCCCATTTACCGA
CGCTTAGAATATTACCGATCGAGTAGCACCGGAGAGTACACTGTAGACTT
GTCT
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig114:349670..355523-

>mRNA_A-nodosum_M_contig114.16.1 ID=mRNA_A-nodosum_M_contig114.16.1|Name=mRNA_A-nodosum_M_contig114.16.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1212bp|location=Sequence derived from alignment at A-nodosum_M_contig114:349670..355523- (Ascophyllum nodosum dioecious)
ATGTTCAACCCATTGGCTGCCCGGATCGATGTGATCGCCGACGTCCTGGT
TCTGTGCCCTACACAAGACTTCCTGTTTCTTGGCAGCGTCGGCAAGGCTT
GGAAAACGGCTTGGGTAGCCGTAGGCCGGGCGAAAAACACGAGCATTGGC
CTGGCTGCGGCAACCCAGGCACGGACAGAGTGGGCACTCGACGACTCTAG
TTTCTGGGGCGTGGCAAGGCGCCGTGGAGGTGTTTTCTGTCTGACCGCTA
GGGCGGGTAACCTCGGAGGGCTTCAGGCGGCAGCGAAGGTGTGTGGAGGT
GAATGGAACCGCCAAGACGGGGCGCGGCAAGTGATCGAGCTCGCTGCGGA
GAGTGGGCACCTTAACATGATTCGGTGGGCGCGGGAACAGGGGTGTCCCT
GGGGCGAACAAACTTGCGCCTCGGCGGCATTGGGAGGACATCCAGAAATA
TTGCGCTGGCTGAAAGAGCAAGGCTGTCCCTGGGACAAGCTGACGTGCCA
ATTTCTGGCTAAGGACGGACACTTAGAGGTGCTCAAGTGGGCCAGGGAAA
TGTGTTGTCCGTGGGATGAGTCCACGTGCCACGCTGCGGCAGAAGGGGGC
CACCTAGAACTACTTAAATGGGCGAGGTCACAAGACTGCAAGTGGGATGC
AGAGACGTGCAGCAGAGCGGCGTTGGGCGGGCATCTCGATGTATTGCAGT
GGCTAGTGAGGCAGAATTGCCCAATGGGTAATCACGCCTGCAGTCGTGCG
GCAGCCGAAGGCGGTCACCTGGGAGTGCTCAACTGGTTGAAATCCAAGGG
CCGTTGGAGTGCTTGGGACGCCTGCAGTTCGGCGGCCTCGGGTGGGCATT
TAGAAGTTATCAAATGGGCGAGGCAACAAGGCTGTGACTGGGACGAGGCA
ACTTGCTACTCAGCCGCCGGTGGGGGCCACCTGGAGGTCCTTAAGTGGGT
GCGCTCGGAAGGATGTCCTTGGAATGAGAGCACGTGTGACTACGCAGCGA
GGGGTGGCCACCTAGAGGTGCTACAGTGGGCGAGAATGCAGGGGTGCCCG
TGGGACGAAGTGACCTCTGTGTACGCCACCGAAGTTGGTCACTTACGCAT
GCTGAAGTGGGCCGTTGAGCAAGGGTGCCCTTGGAATAGAGAGACGTGCC
TCCTCGCTGCGGAGAAGACGGGGGACGGAGAGTTAGTCTCGTGGATCAAG
CAGCAGGGTTGA
back to top