mRNA_A-nodosum_M_contig114.31.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig114.31.1
Unique NamemRNA_A-nodosum_M_contig114.31.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig114.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig114contigA-nodosum_M_contig114:554578..556250 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size159
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size156
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866544.2550495-CDS-A-nodosum_M_contig114:554578..5546561680866544.2550495-CDS-A-nodosum_M_contig114:554578..554656Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig114 554579..554656 -
1680866544.2694654-CDS-A-nodosum_M_contig114:556172..5562501680866544.2694654-CDS-A-nodosum_M_contig114:556172..556250Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig114 556173..556250 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig114.31.1prot_A-nodosum_M_contig114.31.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig114 554579..556250 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig114.31.1

>prot_A-nodosum_M_contig114.31.1 ID=prot_A-nodosum_M_contig114.31.1|Name=mRNA_A-nodosum_M_contig114.31.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=52bp
VLAHNLGHGGARTILRQPRRVATRMRQVLKRQKKRGRGDDVAYVLARTVR
SC
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mRNA from alignment at A-nodosum_M_contig114:554578..556250-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig114.31.1 ID=mRNA_A-nodosum_M_contig114.31.1|Name=mRNA_A-nodosum_M_contig114.31.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1673bp|location=Sequence derived from alignment at A-nodosum_M_contig114:554578..556250- (Ascophyllum nodosum dioecious)
GTGCTTGCACACAACCTAGGCCACGGTGGAGCAAGGACCATCCTCAGGCA
ACCTCGACGTGTGGCCACGAGAATGCGGGCGAGGTAGCTAGCATATCGAT
GAAGGTTAGTGACCCTCCTCGGAGAATAGGTTTATTGTCCTGGTGTGCAG
CCTCGATACCAGACGGAAGTTTAGAGTACACCTTACAGCACCTGCTGTCT
TTCAAAATATCGTTTACTGTTGTTTTGTAGACAAAAAAATATTTGTGGTC
ATCTTGACCTCTACATGGTAGTACTGTATTGGGCTGTATGTATGTATGTA
TCTATGTATCTATGTATGTATGTATGTATTGTTGAGATTGTGGAACACCC
TGTTCAGATAATGTGCTGGTGCTCTGTACAACAGACAGTATATTGCAATA
TGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATTTATTAAAT
TGTAACCACGCAATCCATCCTAGTTCATTCTATGCCCTGTCATCAGTATA
TTGCAATATGTATGTATGTATGTATGTATGTATGTATGTATGTATATTTA
TTATATTGCACACAACGAACCGCGCAATCCGGCCGTCATCCGAGTCATTC
TATGCCACTCGCATTGATCCTCCCAAGGGGGAATCAATGATACTTGTATG
TATGTATGTATGTATTGTAGAGATTGTGATTGATTCCGTGTCAGAAGATG
TGCTGGTGCTCTGTACAACATTATATTGTAGAAATGCGTCTGCTGCACTA
GATATGTTTTGTGTCCAAAGCTTATTACTATACACAACAGTAGTGTTGTA
CAGTTATGGGCGACCTAATTTGTTCCGTTTTTTTTATGTACGAGCGTACA
TACATTACAACCCACTTCATACCAATAGTAGTGATGAATAAGAGAGGCGC
ATACCATTTGGTCCACGTTTATCTGCGCACCGGTTAGCTGAGGTACCTTG
ATGAGAACAATACTGGCCTTGAGGTCAGCGGACTCTCGGCAGTGAACGCC
ATCGGAACCCAAATGCGTGACCCGACGAACTCGTGACTGACCCGATGGTG
TATGGTGGTATACAAAAATGTATGCCGCCTGTGAAATCTTGAGAACTCCC
GTAAGTAAGTACCCGATTCAGCGTGAGTGTGGCGAATGAGAAGGCTGGCG
CGGGACGGGACGGCCGAACCCGTCTCGCGAGATCAAAATCTCCGACGCGA
ACGCGGACAGGGAAAATAAATGCTAATTTTCCTTGTTCATCTGATCACGT
GCAGGAATGACTACCTTACCCGGTTGATCCATACTCTTGCTATATGTGTG
ACCATACACTATATGTTGCGTGTCACGACAAGATGGGTCATTCACTGCTG
TATCCCCCCCCCCTCTTATTTTTATACCCTACACCTAGCTGTAAAACTAT
AGGTAGTTTAGATTTCCGAGTTCATTACGGGAAGGATGCATGCACACATT
TTTTTAGAGCGCCGGTTGATTCTTACATTGTGTAGGGGTTTAGATTTCCG
GTCTATCGGCTGTAGGCCTTTTATAGATCGATAAGCTTCACAGGCTTGCC
TAACTAACAACGCTCTTTTTCATTTGTATGCCGTGCCCCCGCAGCAAGTG
CTGAAGCGGCAAAAGAAGAGGGGAAGAGGAGATGATGTGGCGTACGTGCT
CGCTCGGACAGTTCGCTCCTGCA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig114:554578..556250-

>mRNA_A-nodosum_M_contig114.31.1 ID=mRNA_A-nodosum_M_contig114.31.1|Name=mRNA_A-nodosum_M_contig114.31.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=156bp|location=Sequence derived from alignment at A-nodosum_M_contig114:554578..556250- (Ascophyllum nodosum dioecious)
GTGCTTGCACACAACCTAGGCCACGGTGGAGCAAGGACCATCCTCAGGCA
ACCTCGACGTGTGGCCACGAGAATGCGGCAAGTGCTGAAGCGGCAAAAGA
AGAGGGGAAGAGGAGATGATGTGGCGTACGTGCTCGCTCGGACAGTTCGC
TCCTGC
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