mRNA_A-nodosum_M_contig1133.23.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1133.23.1
Unique NamemRNA_A-nodosum_M_contig1133.23.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1133.23.1 vs. uniprot
Match: A0A2R4QQ80_9PHAE (NADH dehydrogenase subunit 9 n=3 Tax=Fucus TaxID=3011 RepID=A0A2R4QQ80_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 2.720e-44
Identity = 69/75 (92.00%), Postives = 69/75 (92.00%), Query Frame = 1 
Query:    1 LFGVFFSGHPDLRRLLTGYGFEGHPLRKDFPLSGYFELRYDEDQRVVVCEPFELTQEFRAFDFHIPLSQDFKNIT 225
            LFGVFFSGHPDLRRLLT YGFEGHPLRKDFPLSGYFELRYDEDQRVVVCEP ELTQEFR FDFHIP SQD K IT
Sbjct:  117 LFGVFFSGHPDLRRLLTDYGFEGHPLRKDFPLSGYFELRYDEDQRVVVCEPIELTQEFRTFDFHIPWSQDLKKIT 191
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BLAST of mRNA_A-nodosum_M_contig1133.23.1 vs. uniprot
Match: A0A0U1XC91_SCYLO (NADH dehydrogenase subunit 9 n=2 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A0U1XC91_SCYLO)

HSP 1 Score: 138 bits (347), Expect = 9.400e-40
Identity = 62/70 (88.57%), Postives = 66/70 (94.29%), Query Frame = 1 
Query:    1 LFGVFFSGHPDLRRLLTGYGFEGHPLRKDFPLSGYFELRYDEDQRVVVCEPFELTQEFRAFDFHIPLSQD 210
            LFGVFFS HPDLRR+LT YGFEGHPLRKDFPLSGYFELRYDEDQRVVVCEP EL+QEFR+FDFHIP SQ+
Sbjct:  117 LFGVFFSNHPDLRRILTDYGFEGHPLRKDFPLSGYFELRYDEDQRVVVCEPIELSQEFRSFDFHIPWSQN 186
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BLAST of mRNA_A-nodosum_M_contig1133.23.1 vs. uniprot
Match: A0A0U1Z5T2_9PHAE (NADH dehydrogenase subunit 9 n=22 Tax=Sargassaceae TaxID=3014 RepID=A0A0U1Z5T2_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 2.180e-39
Identity = 62/68 (91.18%), Postives = 64/68 (94.12%), Query Frame = 1 
Query:    1 LFGVFFSGHPDLRRLLTGYGFEGHPLRKDFPLSGYFELRYDEDQRVVVCEPFELTQEFRAFDFHIPLS 204
            L GVFFSGHPDLRR+LT YGFEGHPLRKDFPLSGYFELRYDEDQRVVVCEP ELTQEFR+FDFHIP S
Sbjct:  117 LLGVFFSGHPDLRRILTDYGFEGHPLRKDFPLSGYFELRYDEDQRVVVCEPIELTQEFRSFDFHIPWS 184
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BLAST of mRNA_A-nodosum_M_contig1133.23.1 vs. uniprot
Match: A0A8F0FDI1_9PHAE (NADH dehydrogenase subunit 9 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0FDI1_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 3.080e-38
Identity = 61/70 (87.14%), Postives = 64/70 (91.43%), Query Frame = 1 
Query:    1 LFGVFFSGHPDLRRLLTGYGFEGHPLRKDFPLSGYFELRYDEDQRVVVCEPFELTQEFRAFDFHIPLSQD 210
            LFGVFFS HPDLRR+LT YGFEGHPLRKDFPLSGYFELRYDEDQRVVVCE  ELTQEFR+FDFH P SQ+
Sbjct:  117 LFGVFFSDHPDLRRILTDYGFEGHPLRKDFPLSGYFELRYDEDQRVVVCEAIELTQEFRSFDFHTPWSQN 186
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BLAST of mRNA_A-nodosum_M_contig1133.23.1 vs. uniprot
Match: A0A1I9LW92_9PHAE (NADH dehydrogenase subunit 9 n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LW92_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 8.780e-38
Identity = 60/71 (84.51%), Postives = 64/71 (90.14%), Query Frame = 1 
Query:    1 LFGVFFSGHPDLRRLLTGYGFEGHPLRKDFPLSGYFELRYDEDQRVVVCEPFELTQEFRAFDFHIPLSQDF 213
            LFGVFFS HPDLRR+LT YGFEGHPLRKDFPLSGYFELRYDEDQRVVVCE  EL+QEFR+F+FHIP  Q F
Sbjct:  117 LFGVFFSNHPDLRRILTDYGFEGHPLRKDFPLSGYFELRYDEDQRVVVCESIELSQEFRSFNFHIPWQQKF 187
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BLAST of mRNA_A-nodosum_M_contig1133.23.1 vs. uniprot
Match: A0A0U2KE80_9PHAE (NADH dehydrogenase subunit 9 n=58 Tax=Phaeophyceae TaxID=2870 RepID=A0A0U2KE80_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 5.030e-37
Identity = 58/69 (84.06%), Postives = 64/69 (92.75%), Query Frame = 1 
Query:    1 LFGVFFSGHPDLRRLLTGYGFEGHPLRKDFPLSGYFELRYDEDQRVVVCEPFELTQEFRAFDFHIPLSQ 207
            LFGVFFS HPDLRR+LT YGFEGHPLRKDFPLSGYFELRYDEDQ+VVVCE  EL+QEFR+F+FH+P SQ
Sbjct:  117 LFGVFFSNHPDLRRILTDYGFEGHPLRKDFPLSGYFELRYDEDQKVVVCEAIELSQEFRSFNFHVPWSQ 185
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BLAST of mRNA_A-nodosum_M_contig1133.23.1 vs. uniprot
Match: A0A516ICK1_9PHAE (NADH dehydrogenase subunit 9 n=2 Tax=Lessoniaceae TaxID=35120 RepID=A0A516ICK1_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 5.030e-37
Identity = 58/70 (82.86%), Postives = 64/70 (91.43%), Query Frame = 1 
Query:    1 LFGVFFSGHPDLRRLLTGYGFEGHPLRKDFPLSGYFELRYDEDQRVVVCEPFELTQEFRAFDFHIPLSQD 210
            LFGVFF  HPDLRR+LT YGFEGHPLRKDFPLSGYFELRYDEDQ+VVVCE  EL+QEFR+FDFH+P SQ+
Sbjct:  117 LFGVFFYNHPDLRRILTDYGFEGHPLRKDFPLSGYFELRYDEDQKVVVCEAIELSQEFRSFDFHVPWSQN 186
[Close]
BLAST of mRNA_A-nodosum_M_contig1133.23.1 vs. uniprot
Match: Q94YZ7_PYLLI (NADH dehydrogenase subunit 9 n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=Q94YZ7_PYLLI)

HSP 1 Score: 130 bits (327), Expect = 1.010e-36
Identity = 58/70 (82.86%), Postives = 63/70 (90.00%), Query Frame = 1 
Query:    1 LFGVFFSGHPDLRRLLTGYGFEGHPLRKDFPLSGYFELRYDEDQRVVVCEPFELTQEFRAFDFHIPLSQD 210
            LFGVFFS HPDLRR+LT YGFEGHPLRKDFPLSGYFELRYDEDQ+VVVCE  EL+QEFR FDFH+P S +
Sbjct:  117 LFGVFFSNHPDLRRILTDYGFEGHPLRKDFPLSGYFELRYDEDQKVVVCESIELSQEFRTFDFHMPWSHN 186
[Close]
BLAST of mRNA_A-nodosum_M_contig1133.23.1 vs. uniprot
Match: A0A8F0K105_9PHAE (NADH dehydrogenase subunit 9 n=1 Tax=Analipus japonicus TaxID=31333 RepID=A0A8F0K105_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 1.100e-35
Identity = 58/69 (84.06%), Postives = 61/69 (88.41%), Query Frame = 1 
Query:    1 LFGVFFSGHPDLRRLLTGYGFEGHPLRKDFPLSGYFELRYDEDQRVVVCEPFELTQEFRAFDFHIPLSQ 207
            LFGVFFS HPDLRR+LT YGFEGHPLRKDFPLSGYFELRYDEDQRVVVCE  EL+QEFR+F FH P  Q
Sbjct:  117 LFGVFFSNHPDLRRILTDYGFEGHPLRKDFPLSGYFELRYDEDQRVVVCEAIELSQEFRSFTFHTPWLQ 185
[Close]
BLAST of mRNA_A-nodosum_M_contig1133.23.1 vs. uniprot
Match: A0A4Y5T7L5_9PHAE (NADH dehydrogenase subunit 9 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A4Y5T7L5_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 3.790e-34
Identity = 57/70 (81.43%), Postives = 61/70 (87.14%), Query Frame = 1 
Query:    1 LFGVFFSGHPDLRRLLTGYGFEGHPLRKDFPLSGYFELRYDEDQRVVVCEPFELTQEFRAFDFHIPLSQD 210
            LFGVFF  HPDLRR+LT YGFEGHPLRKDFPLSG+FELRYDEDQRVVVCE  ELTQEFRAF+F  P S +
Sbjct:  121 LFGVFFYTHPDLRRILTDYGFEGHPLRKDFPLSGFFELRYDEDQRVVVCESIELTQEFRAFNFSTPWSNN 190
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1133.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R4QQ80_9PHAE2.720e-4492.00NADH dehydrogenase subunit 9 n=3 Tax=Fucus TaxID=3... [more]
A0A0U1XC91_SCYLO9.400e-4088.57NADH dehydrogenase subunit 9 n=2 Tax=Scytosiphonac... [more]
A0A0U1Z5T2_9PHAE2.180e-3991.18NADH dehydrogenase subunit 9 n=22 Tax=Sargassaceae... [more]
A0A8F0FDI1_9PHAE3.080e-3887.14NADH dehydrogenase subunit 9 n=1 Tax=Chorda asiati... [more]
A0A1I9LW92_9PHAE8.780e-3884.51NADH dehydrogenase subunit 9 n=1 Tax=Pleurocladia ... [more]
A0A0U2KE80_9PHAE5.030e-3784.06NADH dehydrogenase subunit 9 n=58 Tax=Phaeophyceae... [more]
A0A516ICK1_9PHAE5.030e-3782.86NADH dehydrogenase subunit 9 n=2 Tax=Lessoniaceae ... [more]
Q94YZ7_PYLLI1.010e-3682.86NADH dehydrogenase subunit 9 n=1 Tax=Pylaiella lit... [more]
A0A8F0K105_9PHAE1.100e-3584.06NADH dehydrogenase subunit 9 n=1 Tax=Analipus japo... [more]
A0A4Y5T7L5_9PHAE3.790e-3481.43NADH dehydrogenase subunit 9 n=1 Tax=Dictyopteris ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1133contigA-nodosum_M_contig1133:250178..250405 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog691883.XP_009496058.1
Preferred nameNDUFS3
PFAMsComplex1_30kDa
Model size228
Max annot lvl33154|Opisthokonta
KEGG rclassRC00061
KEGG koko:K03936
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143
Hectar predicted targeting categoryother localisation
GOsGO:0001558,GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0005759,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0007275,GO:0007568,GO:0008137,GO:0008150,GO:0008152,GO:0008340,GO:0009055,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009966,GO:0009968,GO:0009987,GO:0010257,GO:0010259,GO:0010646,GO:0010648,GO:0010941,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016604,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0022607,GO:0022900,GO:0022904,GO:0023051,GO:0023057,GO:0030308,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032981,GO:0032991,GO:0033108,GO:0034622,GO:0034641,GO:0040008,GO:0042773,GO:0042775,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044451,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0045926,GO:0046034,GO:0046483,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048856,GO:0050136,GO:0050789,GO:0050794,GO:0051128,GO:0055086,GO:0055114,GO:0060548,GO:0065003,GO:0065007,GO:0070013,GO:0070469,GO:0071704,GO:0071840,GO:0072521,GO:0072593,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1902531,GO:1902532,GO:1990204,GO:2001233,GO:2001234,GO:2001242,GO:2001243
Exons1
Evalue5.08e-31
EggNOG OGsCOG0852@1|root,KOG1713@2759|Eukaryota,38BAK@33154|Opisthokonta
EC1.6.5.3,1.6.99.3
DescriptionNADH dehydrogenase (quinone) activity
Cds size228
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866539.3655832-CDS-A-nodosum_M_contig1133:250177..2504051680866539.3655832-CDS-A-nodosum_M_contig1133:250177..250405Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1133 250178..250405 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1133.23.1prot_A-nodosum_M_contig1133.23.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1133 250178..250405 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1133.23.1

>prot_A-nodosum_M_contig1133.23.1 ID=prot_A-nodosum_M_contig1133.23.1|Name=mRNA_A-nodosum_M_contig1133.23.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=76bp
LFGVFFSGHPDLRRLLTGYGFEGHPLRKDFPLSGYFELRYDEDQRVVVCE
PFELTQEFRAFDFHIPLSQDFKNIT*
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mRNA from alignment at A-nodosum_M_contig1133:250178..250405+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1133.23.1 ID=mRNA_A-nodosum_M_contig1133.23.1|Name=mRNA_A-nodosum_M_contig1133.23.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=228bp|location=Sequence derived from alignment at A-nodosum_M_contig1133:250178..250405+ (Ascophyllum nodosum dioecious)
TTATTTGGCGTATTTTTTTCGGGCCATCCTGATTTACGACGACTCTTAAC
AGGTTATGGGTTTGAAGGTCATCCTTTAAGAAAGGATTTTCCGTTAAGCG
GTTATTTTGAGTTACGCTACGACGAAGATCAGAGAGTGGTTGTTTGTGAG
CCTTTTGAATTAACTCAAGAATTTCGTGCCTTTGACTTTCATATTCCTTT
GTCTCAAGATTTTAAAAACATTACATAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1133:250178..250405+

>mRNA_A-nodosum_M_contig1133.23.1 ID=mRNA_A-nodosum_M_contig1133.23.1|Name=mRNA_A-nodosum_M_contig1133.23.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=228bp|location=Sequence derived from alignment at A-nodosum_M_contig1133:250178..250405+ (Ascophyllum nodosum dioecious)
TTATTTGGCGTATTTTTTTCGGGCCATCCTGATTTACGACGACTCTTAAC
AGGTTATGGGTTTGAAGGTCATCCTTTAAGAAAGGATTTTCCGTTAAGCG
GTTATTTTGAGTTACGCTACGACGAAGATCAGAGAGTGGTTGTTTGTGAG
CCTTTTGAATTAACTCAAGAATTTCGTGCCTTTGACTTTCATATTCCTTT
GTCTCAAGATTTTAAAAACATTACATAA
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