mRNA_A-nodosum_M_contig11292.1.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig11292.1.1 vs. uniprot
Match: D8LS38_ECTSI (SPX domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS38_ECTSI) HSP 1 Score: 142 bits (357), Expect = 3.310e-37 Identity = 72/97 (74.23%), Postives = 83/97 (85.57%), Query Frame = 1
Query: 1 LVAVEFSWMPFEYTHWQYMVGVGVAFLAMQAHEGVVMSITTKVIPAELARGTWNLGFLATEAGTLGRFVGDALITAMGVMTLSSLNILLFLPSMVLV 291
LV V+FS PF YT QY+ GV +AF+AMQAHEGV+MSIT+K+IPAELA+GTWN GFLATEAGT GRFVGDALIT +GVMTLSSL+ LLF PS+ LV
Sbjct: 634 LVIVDFSMSPFRYTEGQYVAGVSLAFVAMQAHEGVIMSITSKIIPAELAKGTWNSGFLATEAGTFGRFVGDALITVLGVMTLSSLDFLLFFPSVFLV 730
BLAST of mRNA_A-nodosum_M_contig11292.1.1 vs. uniprot
Match: A0A6H5JD70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD70_9PHAE) HSP 1 Score: 140 bits (354), Expect = 7.190e-37 Identity = 72/100 (72.00%), Postives = 85/100 (85.00%), Query Frame = 1
Query: 1 LVAVEFSWMPFEYTHWQYMVGVGVAFLAMQAHEGVVMSITTKVIPAELARGTWNLGFLATEAGTLGRFVGDALITAMGVMTLSSLNILLFLPSMVLVGLM 300
LV V+F+ PF YT QY+ GV +AF+AMQAHEGV+MSIT+K+IP ELA+GTWN GFLATEAGT GRFVGDALIT +GVMTLSSL+ LLF PS+VLV +M
Sbjct: 579 LVMVDFAASPFRYTEGQYVAGVSLAFVAMQAHEGVIMSITSKIIPVELAKGTWNSGFLATEAGTFGRFVGDALITVLGVMTLSSLDFLLFFPSVVLVVVM 678
BLAST of mRNA_A-nodosum_M_contig11292.1.1 vs. uniprot
Match: A0A835YJ60_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ60_9STRA) HSP 1 Score: 110 bits (275), Expect = 4.620e-26 Identity = 58/89 (65.17%), Postives = 70/89 (78.65%), Query Frame = 1
Query: 37 YTHWQYMVGVGVAFLAMQAHEGVVMSITTKVIPAELARGTWNLGFLATEAGTLGRFVGDALITAMGVMTLSSLNILLFLPSMVLVGLMI 303
YT QY++G+GVAF+A+QAHEGVVM IT+K+IPA LARGT+N GFLATEAGT GRF+GD IT GVMT+ L LLF+P + LMI
Sbjct: 763 YTLTQYVLGIGVAFVALQAHEGVVMGITSKIIPAHLARGTFNSGFLATEAGTSGRFMGDIAITVFGVMTIDQLLNLLFIPGFICACLMI 851
BLAST of mRNA_A-nodosum_M_contig11292.1.1 vs. uniprot
Match: B8C841_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C841_THAPS) HSP 1 Score: 75.5 bits (184), Expect = 8.670e-14 Identity = 39/77 (50.65%), Postives = 52/77 (67.53%), Query Frame = 1
Query: 49 QYMVGVGVAFLAMQAHEGVVMSITTKVIPAELARGTWNLGFLATEAGTLGRFVGDALITAMGVMTLSSLNILLFLPS 279
+Y+ G + F ++QA +GVV S+ +KVIP LA GTWN GFLAT GT GR GD IT++G + L + LLF+PS
Sbjct: 403 RYIAGYLLVFCSVQAFDGVVGSVLSKVIPTALASGTWNSGFLATVVGTFGRACGDVFITSVGYIDLRQIMNLLFVPS 479
BLAST of mRNA_A-nodosum_M_contig11292.1.1 vs. uniprot
Match: A0A8K1CQA2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQA2_PYTOL) HSP 1 Score: 72.0 bits (175), Expect = 1.470e-12 Identity = 38/77 (49.35%), Postives = 49/77 (63.64%), Query Frame = 1
Query: 4 VAVEFSWMPFEYTHWQYMVGVGVAFLAMQAHEGVVMSITTKVIPAELARGTWNLGFLATEAGTLGRFVGDALITAMG 234
VAV + Y WQ++VG + F++ EGV MS+ +K IP ARGT+N G LATEAGT GR +GD LIT +G
Sbjct: 576 VAVIIHYGTGAYESWQFIVGGIIIFISTNVLEGVNMSLLSKTIPKAFARGTFNSGLLATEAGTFGRALGDVLITLVG 652
BLAST of mRNA_A-nodosum_M_contig11292.1.1 vs. uniprot
Match: A0A7S2AS13_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AS13_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 1.610e-12 Identity = 34/66 (51.52%), Postives = 47/66 (71.21%), Query Frame = 1
Query: 37 YTHWQYMVGVGVAFLAMQAHEGVVMSITTKVIPAELARGTWNLGFLATEAGTLGRFVGDALITAMG 234
YT QY++G +AF+A+Q +EGV M++ K +P +LA+GT N G LATEAGTLGR +GD + G
Sbjct: 139 YTVPQYLIGFVLAFIALQVNEGVAMALLAKSMPPKLAKGTCNSGLLATEAGTLGRAIGDFYVALAG 204
BLAST of mRNA_A-nodosum_M_contig11292.1.1 vs. uniprot
Match: A0A6T8JDI6_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8JDI6_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 7.020e-12 Identity = 40/81 (49.38%), Postives = 57/81 (70.37%), Query Frame = 1
Query: 49 QYMVGVGVAFLAMQAHEGVVMSITTKVIPAELARGTWNLGFLATEAGTLGRFVGDALITAMGVMTLSSLNILLFLPSMVLV 291
+Y++G +AF ++A E V S+ +KV+P+ LA GT+N G LAT GT GR VGDALITAMG++++ +L LL +P LV
Sbjct: 650 KYIMGSIIAFSGIEACESFVASLMSKVVPSSLAVGTFNSGLLATLVGTGGRAVGDALITAMGLISIRNLLNLLVIPGATLV 730
BLAST of mRNA_A-nodosum_M_contig11292.1.1 vs. uniprot
Match: B7FWF5_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FWF5_PHATC) HSP 1 Score: 69.7 bits (169), Expect = 9.540e-12 Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 1
Query: 1 LVAVEFSWMPFEYTHWQYMVGVGVAFLAMQAHEGVVMSITTKVIPAELARGTWNLGFLATEAGTLGRFVGDALITAMG 234
L+ +++S + Y+ QY+VG + F++ A EG MS+ +K IP A+G +N+G LATEAGTLGR VGD L+TA G
Sbjct: 580 LIILQYS---YNYSIAQYIVGSVIIFVSTNALEGPNMSLLSKTIPKSWAKGIFNIGLLATEAGTLGRAVGDVLLTACG 654
BLAST of mRNA_A-nodosum_M_contig11292.1.1 vs. uniprot
Match: B8C838_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C838_THAPS) HSP 1 Score: 68.2 bits (165), Expect = 3.410e-11 Identity = 37/77 (48.05%), Postives = 50/77 (64.94%), Query Frame = 1
Query: 49 QYMVGVGVAFLAMQAHEGVVMSITTKVIPAELARGTWNLGFLATEAGTLGRFVGDALITAMGVMTLSSLNILLFLPS 279
+Y+ G + F ++QA +GVV S+ +KVIP LA GT N G LAT GT GR GD IT++G + L + LLF+PS
Sbjct: 1077 RYIAGYLLVFCSVQAFDGVVGSVLSKVIPTALATGTLNSGLLATVVGTFGRACGDVFITSVGYIDLRQIMNLLFVPS 1153
BLAST of mRNA_A-nodosum_M_contig11292.1.1 vs. uniprot
Match: A0A7S4QR80_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QR80_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 4.360e-11 Identity = 37/81 (45.68%), Postives = 55/81 (67.90%), Query Frame = 1
Query: 49 QYMVGVGVAFLAMQAHEGVVMSITTKVIPAELARGTWNLGFLATEAGTLGRFVGDALITAMGVMTLSSLNILLFLPSMVLV 291
+Y++G +AF ++A E V S+ +KV+P+ELA GT+N G LAT GT GR GD +IT +G+++L + LL +PS LV
Sbjct: 219 RYILGSVIAFSGVEACESFVASLLSKVVPSELATGTFNAGLLATLVGTGGRATGDVVITVLGLVSLRHILNLLMVPSCALV 299 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11292.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig11292.1.1 >prot_A-nodosum_M_contig11292.1.1 ID=prot_A-nodosum_M_contig11292.1.1|Name=mRNA_A-nodosum_M_contig11292.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=93bp MPFEYTHWQYMVGVGVAFLAMQAHEGVVMSITTKVIPAELARGTWNLGFLback to top mRNA from alignment at A-nodosum_M_contig11292:2194..2872+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig11292.1.1 ID=mRNA_A-nodosum_M_contig11292.1.1|Name=mRNA_A-nodosum_M_contig11292.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=679bp|location=Sequence derived from alignment at A-nodosum_M_contig11292:2194..2872+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig11292:2194..2872+ >mRNA_A-nodosum_M_contig11292.1.1 ID=mRNA_A-nodosum_M_contig11292.1.1|Name=mRNA_A-nodosum_M_contig11292.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=279bp|location=Sequence derived from alignment at A-nodosum_M_contig11292:2194..2872+ (Ascophyllum nodosum dioecious)back to top |