mRNA_A-nodosum_M_contig11292.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig11292.1.1
Unique NamemRNA_A-nodosum_M_contig11292.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig11292.1.1 vs. uniprot
Match: D8LS38_ECTSI (SPX domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS38_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 3.310e-37
Identity = 72/97 (74.23%), Postives = 83/97 (85.57%), Query Frame = 1
Query:    1 LVAVEFSWMPFEYTHWQYMVGVGVAFLAMQAHEGVVMSITTKVIPAELARGTWNLGFLATEAGTLGRFVGDALITAMGVMTLSSLNILLFLPSMVLV 291
            LV V+FS  PF YT  QY+ GV +AF+AMQAHEGV+MSIT+K+IPAELA+GTWN GFLATEAGT GRFVGDALIT +GVMTLSSL+ LLF PS+ LV
Sbjct:  634 LVIVDFSMSPFRYTEGQYVAGVSLAFVAMQAHEGVIMSITSKIIPAELAKGTWNSGFLATEAGTFGRFVGDALITVLGVMTLSSLDFLLFFPSVFLV 730          
BLAST of mRNA_A-nodosum_M_contig11292.1.1 vs. uniprot
Match: A0A6H5JD70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD70_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 7.190e-37
Identity = 72/100 (72.00%), Postives = 85/100 (85.00%), Query Frame = 1
Query:    1 LVAVEFSWMPFEYTHWQYMVGVGVAFLAMQAHEGVVMSITTKVIPAELARGTWNLGFLATEAGTLGRFVGDALITAMGVMTLSSLNILLFLPSMVLVGLM 300
            LV V+F+  PF YT  QY+ GV +AF+AMQAHEGV+MSIT+K+IP ELA+GTWN GFLATEAGT GRFVGDALIT +GVMTLSSL+ LLF PS+VLV +M
Sbjct:  579 LVMVDFAASPFRYTEGQYVAGVSLAFVAMQAHEGVIMSITSKIIPVELAKGTWNSGFLATEAGTFGRFVGDALITVLGVMTLSSLDFLLFFPSVVLVVVM 678          
BLAST of mRNA_A-nodosum_M_contig11292.1.1 vs. uniprot
Match: A0A835YJ60_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ60_9STRA)

HSP 1 Score: 110 bits (275), Expect = 4.620e-26
Identity = 58/89 (65.17%), Postives = 70/89 (78.65%), Query Frame = 1
Query:   37 YTHWQYMVGVGVAFLAMQAHEGVVMSITTKVIPAELARGTWNLGFLATEAGTLGRFVGDALITAMGVMTLSSLNILLFLPSMVLVGLMI 303
            YT  QY++G+GVAF+A+QAHEGVVM IT+K+IPA LARGT+N GFLATEAGT GRF+GD  IT  GVMT+  L  LLF+P  +   LMI
Sbjct:  763 YTLTQYVLGIGVAFVALQAHEGVVMGITSKIIPAHLARGTFNSGFLATEAGTSGRFMGDIAITVFGVMTIDQLLNLLFIPGFICACLMI 851          
BLAST of mRNA_A-nodosum_M_contig11292.1.1 vs. uniprot
Match: B8C841_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C841_THAPS)

HSP 1 Score: 75.5 bits (184), Expect = 8.670e-14
Identity = 39/77 (50.65%), Postives = 52/77 (67.53%), Query Frame = 1
Query:   49 QYMVGVGVAFLAMQAHEGVVMSITTKVIPAELARGTWNLGFLATEAGTLGRFVGDALITAMGVMTLSSLNILLFLPS 279
            +Y+ G  + F ++QA +GVV S+ +KVIP  LA GTWN GFLAT  GT GR  GD  IT++G + L  +  LLF+PS
Sbjct:  403 RYIAGYLLVFCSVQAFDGVVGSVLSKVIPTALASGTWNSGFLATVVGTFGRACGDVFITSVGYIDLRQIMNLLFVPS 479          
BLAST of mRNA_A-nodosum_M_contig11292.1.1 vs. uniprot
Match: A0A8K1CQA2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQA2_PYTOL)

HSP 1 Score: 72.0 bits (175), Expect = 1.470e-12
Identity = 38/77 (49.35%), Postives = 49/77 (63.64%), Query Frame = 1
Query:    4 VAVEFSWMPFEYTHWQYMVGVGVAFLAMQAHEGVVMSITTKVIPAELARGTWNLGFLATEAGTLGRFVGDALITAMG 234
            VAV   +    Y  WQ++VG  + F++    EGV MS+ +K IP   ARGT+N G LATEAGT GR +GD LIT +G
Sbjct:  576 VAVIIHYGTGAYESWQFIVGGIIIFISTNVLEGVNMSLLSKTIPKAFARGTFNSGLLATEAGTFGRALGDVLITLVG 652          
BLAST of mRNA_A-nodosum_M_contig11292.1.1 vs. uniprot
Match: A0A7S2AS13_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AS13_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.610e-12
Identity = 34/66 (51.52%), Postives = 47/66 (71.21%), Query Frame = 1
Query:   37 YTHWQYMVGVGVAFLAMQAHEGVVMSITTKVIPAELARGTWNLGFLATEAGTLGRFVGDALITAMG 234
            YT  QY++G  +AF+A+Q +EGV M++  K +P +LA+GT N G LATEAGTLGR +GD  +   G
Sbjct:  139 YTVPQYLIGFVLAFIALQVNEGVAMALLAKSMPPKLAKGTCNSGLLATEAGTLGRAIGDFYVALAG 204          
BLAST of mRNA_A-nodosum_M_contig11292.1.1 vs. uniprot
Match: A0A6T8JDI6_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8JDI6_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 7.020e-12
Identity = 40/81 (49.38%), Postives = 57/81 (70.37%), Query Frame = 1
Query:   49 QYMVGVGVAFLAMQAHEGVVMSITTKVIPAELARGTWNLGFLATEAGTLGRFVGDALITAMGVMTLSSLNILLFLPSMVLV 291
            +Y++G  +AF  ++A E  V S+ +KV+P+ LA GT+N G LAT  GT GR VGDALITAMG++++ +L  LL +P   LV
Sbjct:  650 KYIMGSIIAFSGIEACESFVASLMSKVVPSSLAVGTFNSGLLATLVGTGGRAVGDALITAMGLISIRNLLNLLVIPGATLV 730          
BLAST of mRNA_A-nodosum_M_contig11292.1.1 vs. uniprot
Match: B7FWF5_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FWF5_PHATC)

HSP 1 Score: 69.7 bits (169), Expect = 9.540e-12
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    1 LVAVEFSWMPFEYTHWQYMVGVGVAFLAMQAHEGVVMSITTKVIPAELARGTWNLGFLATEAGTLGRFVGDALITAMG 234
            L+ +++S   + Y+  QY+VG  + F++  A EG  MS+ +K IP   A+G +N+G LATEAGTLGR VGD L+TA G
Sbjct:  580 LIILQYS---YNYSIAQYIVGSVIIFVSTNALEGPNMSLLSKTIPKSWAKGIFNIGLLATEAGTLGRAVGDVLLTACG 654          
BLAST of mRNA_A-nodosum_M_contig11292.1.1 vs. uniprot
Match: B8C838_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C838_THAPS)

HSP 1 Score: 68.2 bits (165), Expect = 3.410e-11
Identity = 37/77 (48.05%), Postives = 50/77 (64.94%), Query Frame = 1
Query:   49 QYMVGVGVAFLAMQAHEGVVMSITTKVIPAELARGTWNLGFLATEAGTLGRFVGDALITAMGVMTLSSLNILLFLPS 279
            +Y+ G  + F ++QA +GVV S+ +KVIP  LA GT N G LAT  GT GR  GD  IT++G + L  +  LLF+PS
Sbjct: 1077 RYIAGYLLVFCSVQAFDGVVGSVLSKVIPTALATGTLNSGLLATVVGTFGRACGDVFITSVGYIDLRQIMNLLFVPS 1153          
BLAST of mRNA_A-nodosum_M_contig11292.1.1 vs. uniprot
Match: A0A7S4QR80_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QR80_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 4.360e-11
Identity = 37/81 (45.68%), Postives = 55/81 (67.90%), Query Frame = 1
Query:   49 QYMVGVGVAFLAMQAHEGVVMSITTKVIPAELARGTWNLGFLATEAGTLGRFVGDALITAMGVMTLSSLNILLFLPSMVLV 291
            +Y++G  +AF  ++A E  V S+ +KV+P+ELA GT+N G LAT  GT GR  GD +IT +G+++L  +  LL +PS  LV
Sbjct:  219 RYILGSVIAFSGVEACESFVASLLSKVVPSELATGTFNAGLLATLVGTGGRATGDVVITVLGLVSLRHILNLLMVPSCALV 299          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11292.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS38_ECTSI3.310e-3774.23SPX domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JD70_9PHAE7.190e-3772.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YJ60_9STRA4.620e-2665.17Major facilitator superfamily domain-containing pr... [more]
B8C841_THAPS8.670e-1450.65Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A8K1CQA2_PYTOL1.470e-1249.35Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2AS13_9STRA1.610e-1251.52Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6T8JDI6_9STRA7.020e-1249.38Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
B7FWF5_PHATC9.540e-1247.44Predicted protein n=3 Tax=Phaeodactylum tricornutu... [more]
B8C838_THAPS3.410e-1148.05Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S4QR80_9STRA4.360e-1145.68Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig11292contigA-nodosum_M_contig11292:2194..2872 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LS38
PFAMsMFS_1,SPX
Model size303
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0000325,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006810,GO:0006811,GO:0006817,GO:0006820,GO:0008150,GO:0009705,GO:0015698,GO:0016020,GO:0031090,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051234,GO:0098588,GO:0098805
Exons2
Evalue1.13e-35
EggNOG OGsCOG5036@1|root,KOG2325@1|root,KOG1161@2759|Eukaryota,KOG2325@2759|Eukaryota
Ec32 ortholog descriptionMajor facilitator superfamily
Ec32 orthologEc-12_004930.2
Descriptionmajor facilitator superfamily
Cds size279
COG categoryO
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866526.9623475-UTR-A-nodosum_M_contig11292:2193..22171680866526.9623475-UTR-A-nodosum_M_contig11292:2193..2217Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11292 2194..2217 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866526.9757102-CDS-A-nodosum_M_contig11292:2217..23421680866526.9757102-CDS-A-nodosum_M_contig11292:2217..2342Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11292 2218..2342 +
1680866526.9845734-CDS-A-nodosum_M_contig11292:2718..28721680866526.9845734-CDS-A-nodosum_M_contig11292:2718..2872Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11292 2719..2872 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig11292.1.1prot_A-nodosum_M_contig11292.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig11292 2218..2872 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig11292.1.1

>prot_A-nodosum_M_contig11292.1.1 ID=prot_A-nodosum_M_contig11292.1.1|Name=mRNA_A-nodosum_M_contig11292.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=93bp
MPFEYTHWQYMVGVGVAFLAMQAHEGVVMSITTKVIPAELARGTWNLGFL
ATEAGTLGRFVGDALITAMGVMTLSSLNILLFLPSMVLVGLMI
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mRNA from alignment at A-nodosum_M_contig11292:2194..2872+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig11292.1.1 ID=mRNA_A-nodosum_M_contig11292.1.1|Name=mRNA_A-nodosum_M_contig11292.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=679bp|location=Sequence derived from alignment at A-nodosum_M_contig11292:2194..2872+ (Ascophyllum nodosum dioecious)
CTCGTTGCGGTGGAGTTTTCCTGGATGCCGTTCGAGTACACCCACTGGCA GTATATGGTCGGCGTCGGAGTAGCGTTTTTAGCCATGCAAGCCCACGAAG GGGTCGTGATGTCTATTACTACTAAGGTCATCCCCGCCGAGCTTGCCCGG TGAGGGATCGGTTTATATAAATACATATTATGTACAGTAGATCTGCCACA TTATACTTCATGGTCTACGTGCGGATGTCGGCCGGCTACCCATGCGTCAC TCTTCCGCTCTGAATGCGAGGAGGTTATGTAAAGGGCAGAGGTCGGCGCT CGAGAAGACGGGAAGATGCCCCATGTTCTCTCTCCGTCTGCGTTTTTATC ATACTCTAGAACTACAAGACAGTGATAGTATCTCAAGATAAGCTATGGTT AAAAAGTTATTTTGCTCTGTTCCCATTTCTACACCCGATAAACGTGATTG TATGCTGTAATCTCAATTGGATCCCCGCCCTTCGTACTTCCTCCTGTCGT TGCTATTTACCCGATACTATGAAAGAGGGACATGGAATTTGGGATTCCTG GCGACAGAGGCGGGAACGTTAGGAAGATTCGTGGGGGACGCGCTCATCAC GGCAATGGGCGTAATGACGCTATCGTCTTTGAACATCCTCTTATTTCTCC CATCAATGGTTCTTGTGGGGCTGATGATC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig11292:2194..2872+

>mRNA_A-nodosum_M_contig11292.1.1 ID=mRNA_A-nodosum_M_contig11292.1.1|Name=mRNA_A-nodosum_M_contig11292.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=279bp|location=Sequence derived from alignment at A-nodosum_M_contig11292:2194..2872+ (Ascophyllum nodosum dioecious)
ATGCCGTTCGAGTACACCCACTGGCAGTATATGGTCGGCGTCGGAGTAGC
GTTTTTAGCCATGCAAGCCCACGAAGGGGTCGTGATGTCTATTACTACTA
AGGTCATCCCCGCCGAGCTTGCCCGAGGGACATGGAATTTGGGATTCCTG
GCGACAGAGGCGGGAACGTTAGGAAGATTCGTGGGGGACGCGCTCATCAC
GGCAATGGGCGTAATGACGCTATCGTCTTTGAACATCCTCTTATTTCTCC
CATCAATGGTTCTTGTGGGGCTGATGATC
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