mRNA_A-nodosum_M_contig1128.15.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1128.15.1
Unique NamemRNA_A-nodosum_M_contig1128.15.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1128.15.1 vs. uniprot
Match: UPI001E8DB2BD (uncharacterized protein n=2 Tax=Morchella sect. Distantes TaxID=1051054 RepID=UPI001E8DB2BD)

HSP 1 Score: 68.9 bits (167), Expect = 1.650e-10
Identity = 47/117 (40.17%), Postives = 62/117 (52.99%), Query Frame = 1
Query:    4 IDALVAAGADVNAKSAVGGQTPLHGAVICGGTP----ETIAALFRHGADDGALDETGYPPLHLASKHGKKSAIAALVAAGTDINRRASEDGMTALDWAAFLGNVDVLKMLVENGADV 342
            + AL+ +GA V+ +      T LH A  C G P    + I  L  HGAD  A+D  G P L  A K G  +A   L+    DINR    +G TAL  A+ L +  ++KML+ENGADV
Sbjct:  135 VKALLNSGASVSDRDMKYSTTALHQA--CAGPPHANDKVINYLLDHGADMAAVDNNGRPVLDWAVKKGNNTATELLIKRSVDINRHNKTNGATALHTASTLHDGTIVKMLLENGADV 249          
BLAST of mRNA_A-nodosum_M_contig1128.15.1 vs. uniprot
Match: A0A8J9UWK9_BRAAE (Hypothetical protein n=1 Tax=Brassicogethes aeneus TaxID=1431903 RepID=A0A8J9UWK9_BRAAE)

HSP 1 Score: 68.9 bits (167), Expect = 3.410e-10
Identity = 46/126 (36.51%), Postives = 62/126 (49.21%), Query Frame = 1
Query:   13 LVAAGADVNAKSAVGGQTPLHGAVICGGTPETIAALFRHGADDGALDETGYPPLHLASKHGKKSAIAALVAAGTDINRRASEDGMTALDWAAFLGNVDVLKMLVENGADVRGSGPRGDTPLHFAVK 390
            L+  GADVN +S+    T LH A   G   E    L    AD  A D  G  PL  A           L+  G ++N R S+D + AL  AA  GNV+++ +LV NGAD+      G +PL +AV+
Sbjct: 2943 LINHGADVNLRSSKYNATALHDAAATGNV-EIAKVLLSKKADIDAQDINGNSPLMFAVNKNHTETAEFLINQGANVNLRGSKDKIMALHVAAATGNVEIVNVLVSNGADIDAQDINGKSPLIYAVR 3067          
BLAST of mRNA_A-nodosum_M_contig1128.15.1 vs. uniprot
Match: A4S1E9_OSTLU (Uncharacterized protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S1E9_OSTLU)

HSP 1 Score: 67.0 bits (162), Expect = 9.090e-10
Identity = 49/136 (36.03%), Postives = 70/136 (51.47%), Query Frame = 1
Query:   25 GADVNAKSAVGGQTPLHGAVICG--GTPETIAALFRHGADDGALDETGYPPLHLASKHGKKSAI----AALVAAGTDINRRASEDGMTA-LDWAAFLGNVDVLKMLVENGADVRGSGPRGDTPLHFAVKCKSVGAS 411
            GAD NAK   GG+     A  CG  G+   + AL  HGAD     + GY P+H+A++  KK  I      L A   D N R S   +T  L  AA   + +++K+L++ GADV      G+TPLH A++   + A+
Sbjct:  150 GADTNAKL-YGGKAIHFNAGSCGQRGSVPILHALLEHGADPIEETDQGYQPIHIAARGWKKYCIPYMQTLLEAEAVDPNARRSTGNLTTPLHEAAHKSSFEMVKVLIDAGADVNAQDADGETPLHKAIRGDHIHAA 284          
BLAST of mRNA_A-nodosum_M_contig1128.15.1 vs. uniprot
Match: A0A6H5L6J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6J8_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 4.450e-9
Identity = 44/121 (36.36%), Postives = 58/121 (47.93%), Query Frame = 1
Query:   58 GQTPLHGAVI--CGGTPETIAALFRHGADDGALDETGYPPLHLASKHGKKSAIAALVAAGTDINRRASEDGMTALDWAAFLGNVDVLKMLVENGADVRGSGPRGDTPLHFAVKCKSVGASE 414
            G TPLH      C    E IA L +HGA    ++  G  PLHLA +        AL+  G + N  +       L  A  +G +DVL++L+++GADV  S   G T LH A   K VG  E
Sbjct:  279 GLTPLHSKSHEWCA---EAIATLMKHGAGGNHINADGESPLHLAVRRNDVPVATALLVGGANPNLDSQGGAFPPLYLATIMGYLDVLRVLLQHGADVNRSRTAGATLLHTAANHKDVGVVE 396          
BLAST of mRNA_A-nodosum_M_contig1128.15.1 vs. uniprot
Match: A9V1C4_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V1C4_MONBE)

HSP 1 Score: 61.6 bits (148), Expect = 3.110e-8
Identity = 49/134 (36.57%), Postives = 72/134 (53.73%), Query Frame = 1
Query:    4 IDALVAAGADVNAKSAVGGQTPLHGAVICGGTPETIAALFRHGADDGALDETGY------PPLHLASKHGKKSAIAALVAAGTDINRRASEDGMTALDWAAFLGNVDVLKMLVENGADVRGSGPRGDTPLHFAV 387
            + AL+  GAD++ K     Q+ LH A+I G T E  A     GAD  A D           PLH+A +  K  A+ AL+ AG  ++ + +EDG+  L   A  G++ V+ +L+E+GAD + +   G TPLH AV
Sbjct:   57 VQALLDGGADLHCKDKRQ-QSVLHLAIIYGQT-ELTAIFLAAGADVHASDVVRSLCLWQNTPLHVACRRRKVDAVRALLQAGARVDAQ-NEDGLQPLHCGAHGGDLHVVHLLLEHGADPKVADITGRTPLHLAV 187          
BLAST of mRNA_A-nodosum_M_contig1128.15.1 vs. uniprot
Match: A0A3N4KCJ9_9PEZI (Ankyrin (Fragment) n=2 Tax=Morchella TaxID=5193 RepID=A0A3N4KCJ9_9PEZI)

HSP 1 Score: 59.3 bits (142), Expect = 5.280e-8
Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 1
Query:  172 LHLASKHGKKSAIAALVAAGTDIN-RRASEDGMTALDWAAFLGNVDVLKMLVENGADV 342
            LH AS  G+KS I  L+A G  I+  R  EDGMTAL  A  LGN D++K+L+ENGAD+
Sbjct:    5 LHWASARGRKSLILKLLAQGAKIHVNRTDEDGMTALHSATLLGNWDIVKLLLENGADI 62          
BLAST of mRNA_A-nodosum_M_contig1128.15.1 vs. uniprot
Match: A0L850_MAGMM (Ankyrin repeat-like protein n=1 Tax=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) TaxID=156889 RepID=A0L850_MAGMM)

HSP 1 Score: 61.6 bits (148), Expect = 1.020e-7
Identity = 45/119 (37.82%), Postives = 67/119 (56.30%), Query Frame = 1
Query:   64 TPLHGAVICGGTPETIAALFRHGADDGALDETGYPPLHLASKHGKKSAIAALVAAGT-DINRRASEDGMTALDWAAFLGNVDVLKMLVENGADVRGSGPRGDTPLHFAVKCKSVGASEA 417
            T L+ AVI G   E +  L   GAD    DE G  PLH A+ + + +   AL+ +G  D++ RA E  +TAL+ A   G+V+++K+L+E GAD   +   G+TPLH A     +  +EA
Sbjct:  889 TALNMAVIQGHV-EMVKLLLAVGADATLADEFGNTPLHNAAINNELACAEALLGSGKGDVDARA-EHILTALNMAVIQGHVEMVKLLLEKGADATLADEDGNTPLHVAAIKNELVCAEA 1005          
BLAST of mRNA_A-nodosum_M_contig1128.15.1 vs. uniprot
Match: A0A7S1HEF9_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HEF9_HEMAN)

HSP 1 Score: 57.8 bits (138), Expect = 1.080e-7
Identity = 36/93 (38.71%), Postives = 51/93 (54.84%), Query Frame = 1
Query:  109 IAALFRHGADDGALDETGYPPLHLASKHGKKSAIAALVAAGTDINRRASEDGM-TALDWAAFLGNVDVLKMLVENGADVRGSGPRGDTPLHFA 384
            +  L R GAD  A D++G+ PL  A   G   +   L+ AG  ++      G+ TAL WAA+ G VD +++L+E GADVR     GD+ L  A
Sbjct:    5 VTTLIRRGADVNAQDDSGWTPLCRAVFWGSYFSAVRLLDAGARLDLETL--GLRTALHWAAYGGQVDCVRLLLERGADVRARDGEGDSALDIA 95          
BLAST of mRNA_A-nodosum_M_contig1128.15.1 vs. uniprot
Match: A0A7S4EXR6_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4EXR6_CHRCT)

HSP 1 Score: 57.4 bits (137), Expect = 1.850e-7
Identity = 43/115 (37.39%), Postives = 60/115 (52.17%), Query Frame = 1
Query:    1 AIDALVAAGADVNAKSAVGGQTPLHGAVICGGTPE---TIAALFRHGADDGALDETGYPPLHLASKHGKKSAIAALVAAGTDINRRASEDGMTALDWAAFLGNVDVLKMLVENGA 336
            A+DAL+   + +  +   GG TPLH   +CG +       A L   GAD  A+D  G+ PLH  + +       AL+AAG D+N RAS  G T L  A      DV+K+L ++GA
Sbjct:    4 AVDALLEQDSSLVNEITTGGATPLH---MCGMSRSGQLMTAHLIAKGADIEAVDTYGFRPLHRIASNNLAIGAKALIAAGADVNARAS--GATPLRVAMESRATDVIKVLQQHGA 113          
BLAST of mRNA_A-nodosum_M_contig1128.15.1 vs. uniprot
Match: UPI001C7E69B8 (uncharacterized protein n=1 Tax=Diaporthe citri TaxID=83186 RepID=UPI001C7E69B8)

HSP 1 Score: 59.7 bits (143), Expect = 3.860e-7
Identity = 42/129 (32.56%), Postives = 62/129 (48.06%), Query Frame = 1
Query:    1 AIDALVAAGADVNAKSAVGGQTPLHGAVICGGTPETIAALFRHGADDGALDETGYPPLHLASK----HGKKSAIAALVAAGTDINRRASEDGMTALDWAAFLGNVDVLKMLVENGADVRGSGPRGDTPL 375
            A+  L+ AGA +  K+ +  ++PL  A   G   E +  L   GAD    D  G  PL L +     H +    AAL+ AG ++N        TALD+A    + +++K L++ GADV      G TPL
Sbjct:  326 AVSELLDAGAQLECKTRLRSESPLMIACRTGANSEAVRVLLAAGADVNTNDSYGQTPLCLTAGAPGGHNRVEIAAALLDAGANVNGEQGYARATALDFACVGSHYEMVKFLIDAGADVGHHDRDGSTPL 454          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1128.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001E8DB2BD1.650e-1040.17uncharacterized protein n=2 Tax=Morchella sect. Di... [more]
A0A8J9UWK9_BRAAE3.410e-1036.51Hypothetical protein n=1 Tax=Brassicogethes aeneus... [more]
A4S1E9_OSTLU9.090e-1036.03Uncharacterized protein n=1 Tax=Ostreococcus lucim... [more]
A0A6H5L6J8_9PHAE4.450e-936.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A9V1C4_MONBE3.110e-836.57Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A3N4KCJ9_9PEZI5.280e-855.17Ankyrin (Fragment) n=2 Tax=Morchella TaxID=5193 Re... [more]
A0L850_MAGMM1.020e-737.82Ankyrin repeat-like protein n=1 Tax=Magnetococcus ... [more]
A0A7S1HEF9_HEMAN1.080e-738.71Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S4EXR6_CHRCT1.850e-737.39Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
UPI001C7E69B83.860e-732.56uncharacterized protein n=1 Tax=Diaporthe citri Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1128contigA-nodosum_M_contig1128:151684..152256 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog296587.XP_002504507.1
PFAMsAnk,Ank_2,Ank_4,Ank_5
Model size573
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.98e-13
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Descriptionspectrin binding
Cds size573
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866526.5318205-CDS-A-nodosum_M_contig1128:151683..1522561680866526.5318205-CDS-A-nodosum_M_contig1128:151683..152256Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1128 151684..152256 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1128.15.1prot_A-nodosum_M_contig1128.15.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1128 151684..152256 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1128.15.1

>prot_A-nodosum_M_contig1128.15.1 ID=prot_A-nodosum_M_contig1128.15.1|Name=mRNA_A-nodosum_M_contig1128.15.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=191bp
AIDALVAAGADVNAKSAVGGQTPLHGAVICGGTPETIAALFRHGADDGAL
DETGYPPLHLASKHGKKSAIAALVAAGTDINRRASEDGMTALDWAAFLGN
VDVLKMLVENGADVRGSGPRGDTPLHFAVKCKSVGASEASCEAITALLLH
GAEVDAADNFGETPLVIAIKKEKPALVDALVAGGADVNRRN
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mRNA from alignment at A-nodosum_M_contig1128:151684..152256-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1128.15.1 ID=mRNA_A-nodosum_M_contig1128.15.1|Name=mRNA_A-nodosum_M_contig1128.15.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=573bp|location=Sequence derived from alignment at A-nodosum_M_contig1128:151684..152256- (Ascophyllum nodosum dioecious)
GCGATCGATGCTCTCGTAGCAGCTGGGGCCGACGTCAACGCGAAGAGCGC AGTTGGAGGACAAACACCTCTACACGGGGCTGTAATCTGTGGGGGAACCC CCGAAACCATCGCTGCTCTCTTTCGCCATGGAGCCGACGATGGTGCATTG GACGAGACAGGATACCCACCTCTCCATTTGGCCTCTAAACATGGAAAAAA GTCGGCGATTGCTGCCCTGGTAGCGGCAGGCACGGATATCAACCGCCGTG CTTCAGAAGATGGAATGACGGCATTGGACTGGGCCGCTTTTCTGGGTAAT GTAGATGTCTTAAAAATGCTCGTGGAGAACGGGGCGGATGTTAGGGGAAG CGGTCCCCGCGGTGATACCCCGTTGCATTTTGCAGTGAAATGCAAGAGCG TGGGAGCGAGCGAAGCCTCGTGCGAGGCGATCACCGCCCTCCTGCTGCAC GGAGCCGAAGTGGACGCCGCAGACAATTTCGGCGAGACGCCGCTCGTCAT AGCAATCAAGAAGGAAAAACCTGCGTTGGTTGACGCTCTTGTCGCGGGAG GTGCGGACGTCAACCGTCGTAAT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1128:151684..152256-

>mRNA_A-nodosum_M_contig1128.15.1 ID=mRNA_A-nodosum_M_contig1128.15.1|Name=mRNA_A-nodosum_M_contig1128.15.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=573bp|location=Sequence derived from alignment at A-nodosum_M_contig1128:151684..152256- (Ascophyllum nodosum dioecious)
GCGATCGATGCTCTCGTAGCAGCTGGGGCCGACGTCAACGCGAAGAGCGC
AGTTGGAGGACAAACACCTCTACACGGGGCTGTAATCTGTGGGGGAACCC
CCGAAACCATCGCTGCTCTCTTTCGCCATGGAGCCGACGATGGTGCATTG
GACGAGACAGGATACCCACCTCTCCATTTGGCCTCTAAACATGGAAAAAA
GTCGGCGATTGCTGCCCTGGTAGCGGCAGGCACGGATATCAACCGCCGTG
CTTCAGAAGATGGAATGACGGCATTGGACTGGGCCGCTTTTCTGGGTAAT
GTAGATGTCTTAAAAATGCTCGTGGAGAACGGGGCGGATGTTAGGGGAAG
CGGTCCCCGCGGTGATACCCCGTTGCATTTTGCAGTGAAATGCAAGAGCG
TGGGAGCGAGCGAAGCCTCGTGCGAGGCGATCACCGCCCTCCTGCTGCAC
GGAGCCGAAGTGGACGCCGCAGACAATTTCGGCGAGACGCCGCTCGTCAT
AGCAATCAAGAAGGAAAAACCTGCGTTGGTTGACGCTCTTGTCGCGGGAG
GTGCGGACGTCAACCGTCGTAAT
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