mRNA_A-nodosum_M_contig1128.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1128.2.1
Unique NamemRNA_A-nodosum_M_contig1128.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1128.2.1 vs. uniprot
Match: A0A8J9UWK9_BRAAE (Hypothetical protein n=1 Tax=Brassicogethes aeneus TaxID=1431903 RepID=A0A8J9UWK9_BRAAE)

HSP 1 Score: 102 bits (255), Expect = 7.650e-20
Identity = 81/271 (29.89%), Postives = 118/271 (43.54%), Query Frame = 1
Query:  436 QTPLHGAVICGGNPETIAALFRHGADDGALDGRGDPPLHVALLHGKESAIAALVAGGTDINCRTSKNGLTALDWAAFLGNVDVLKMLVENGADVRGSGPRGDTPLHFAVRRNS---------------------------VGASETSCEAITALLLHGAEVDAADNFGKTPLVIAVEKEKLALVDALVAGGADVNRRNVVDDMAPLDVAASIGNLEVLKALLGGHVXXXXXXXRHGVDVNASNAKGHSPLYEAAARNRVAAIRALVEAGAD 1167
            +T LH A + G N E    L        A D  G  PL  A+ +        L+  G D+N R SK+  TAL  A   GNV++  +LV NGAD+      G +PL FAV +N                            V A+  + E    L+ +GA+++A D  G +PL+ AV+       + L+  G DVN R   D+   L VAA+ GN+++   L+            +G D+NA +  G+ PL  A   N+      L+  GAD
Sbjct: 3696 RTALHVAGLTG-NVEMANVLXXXXXXINAQDINGYSPLIFAVDNNHTKITEYLINHGADVNLRGSKDNRTALHVAGLTGNVEMANVLVSNGADINAQDINGYSPLMFAVYKNHTETVEFLINQGADVNLRGSKDNRTALHVAAATGNIEMSNVLVSNGADINAQDINGYSPLMFAVDNNHPETAEFLINQGVDVNLRGSKDNRTALHVAAATGNVKMANVLVS-----------NGADINAQDINGYWPLMFAFITNQTETAEFLINQGAD 3954          
BLAST of mRNA_A-nodosum_M_contig1128.2.1 vs. uniprot
Match: A0A2V8L3T8_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8L3T8_9BACT)

HSP 1 Score: 89.0 bits (219), Expect = 4.980e-16
Identity = 88/276 (31.88%), Postives = 119/276 (43.12%), Query Frame = 1
Query:  418 KSAVGGQTPLHGAVICGGNPETIAALFRHGADDGALDGRGDPPLHVALLHGKESAIAALVAGGTDINCRTSKNGLTALDWAAFLGNVDVLKMLVENGADVRGSGPRGDTPLHFAVRRNSVGASETSCEAITALLLHGAEVDA-------------ADNFGKTPLVIAVEKEKLALVDALVAGGADVNRRNVVDDMAPLDVAASIGN--------------LEVLKALLGGHVXXXXXXXRHGVDVNASNAKGHSPLYEAAARNRVAAIRALVEAGA 1164
            K + GGQT L  A     +PE +  L  HGAD  A       PL  A   G   +   L+  G D+N    K+ +TAL  AA  GN +   +L+E GA+   +   G T LH+A       + E   + + ALL HGA  +A               + G TPL +A     +  V AL+AGGAD       +  APL VA   GN               EV K LLG            G DVN++  +G + L+ AA +   + +R LVE GA
Sbjct:   23 KESRGGQTALMWAAA-NKHPEIVKLLVEHGADVRARSKGDFTPLLFAAQQGDVESGRTLLGAGADVNENRRKDRMTALMVAAASGNNEFSVLLLEKGANPDLADEIGYTALHYAA------SDEKRVDVVKALLAHGANPNARTTRDAPRTNNSGVSSKGATPLFLAASLGNVETVRALIAGGADPFV-TTDEKTAPLHVATWGGNPYNRDWTEEEKKNLFEVTKLLLG-----------LGADVNSAGEQGWTALHGAAYKGLDSVVRFLVEKGA 279          
BLAST of mRNA_A-nodosum_M_contig1128.2.1 vs. uniprot
Match: A0A7S3SKS7_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3SKS7_EMIHU)

HSP 1 Score: 87.4 bits (215), Expect = 5.350e-15
Identity = 75/244 (30.74%), Postives = 110/244 (45.08%), Query Frame = 1
Query:  436 QTPLHGAVICGGNPETIAALFRHGADDGALDGRGDPPLHVALLHGKESAIAAL----VAGGTDINCRTSKNGLTALDWAAFLGNVDVLKMLVENGADVRGSGPRGDTPLHFAVRRNSVGASETSCEAITALLLHGAEVDAADNFGKTPLVIAVEKEKLALVDALVAGGADVNRRN------------VVDDMAPLDVAASIGNLEVLKALLGGHVXXXXXXXRHGVDVNASNAKGHSPLYEAAA 1119
            +TPL  A   G + E    L   GA D  +D RG  PLH+A+L  K   +  L    V+  + I+   S++G TAL  A  +GN    K+L+  GA V      G TPLH  V +   G    S   +  L + GA+V+   + G++PL +A        V AL+  GAD++ R             +V  M PL +A   G + V++ LL             G   + ++  G SPL+ AAA
Sbjct:  113 RTPLAMAAWYGKSTEVAELLLSKGASDFLVDRRGLSPLHLAVLSMKADMVFVLCQNHVSQASLIDMPASRDGSTALHLAMRVGNQKAAKILLAQGASVELLDKDGATPLHRLVMQEDRG----SASMVRELQVAGADVNVRSSNGESPLHLAAVSGNALAVKALLDIGADIDARTGSVASQPGSDEELVAGMTPLSLAVQYGKVAVVRVLLS-----------RGASTSVASDAGASPLHLAAA 341          
BLAST of mRNA_A-nodosum_M_contig1128.2.1 vs. uniprot
Match: A0L850_MAGMM (Ankyrin repeat-like protein n=1 Tax=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) TaxID=156889 RepID=A0L850_MAGMM)

HSP 1 Score: 85.9 bits (211), Expect = 2.390e-14
Identity = 70/196 (35.71%), Postives = 107/196 (54.59%), Query Frame = 1
Query:  439 TPLHGAVICGGNPETIAALFRHGADDGALDGRGDPPLHVALLHGKESAIAALVAGGT-DINCRTSKNGLTALDWAAFLGNVDVLKMLVENGADVRGSGPRGDTPLHFAVRRNSVGASETSCEAITALLLHG-AEVDAADNFGKTPLVIAVEKEKLALVDALVAGGADVNRRNVVDDMAPLDVAASIGNLEVLKALL 1020
            T L+ AVI G + E +  L   GAD    D  G+ PLH A ++ + +   AL+  G  D++ R +++ LTAL+ A   G+V+++K+L+E GAD   +   G+TPLH A  +N +  +E       ALL  G  +VDA  N  +T L +AV K  + +V  L+  GAD N    +   + L +A   G+ EV+ ALL
Sbjct:  889 TALNMAVIQG-HVEMVKLLLAVGADATLADEFGNTPLHNAAINNELACAEALLGSGKGDVDAR-AEHILTALNMAVIQGHVEMVKLLLEKGADATLADEDGNTPLHVAAIKNELVCAE-------ALLASGKVDVDARGNHSRTALNMAVRKGHVEMVKLLLEKGADPNSE--IFSGSCLHLAIFRGHEEVVSALL 1073          
BLAST of mRNA_A-nodosum_M_contig1128.2.1 vs. uniprot
Match: A0A7R8WQV0_9CRUS (Hypothetical protein n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8WQV0_9CRUS)

HSP 1 Score: 79.7 bits (195), Expect = 1.640e-12
Identity = 66/204 (32.35%), Postives = 99/204 (48.53%), Query Frame = 1
Query:  562 LHGKESAIAA--LVAGGTDINCRTSKNGLTALDWAAFLGNVDVLKMLVENGADVRGSGPRGDTPLHFAVRRNSVGASETSCEAITALLLHGAEVDAADNFGKTPLVIAVEKEKLALVDALVAGGADVNRRNVVDDMAPLDVAASIGNLEVLKALLGGHVXXXXXXXRHGVDVNASNAKGHSPLYEAAARNRVAAIRALVEAGAD 1167
            LH   SA  A  L+A   ++N +  + G T L  A       V+++L+ NGAD   +     +PLH A           S E    L+  GAEV+A D  GKTPL +A+E  + ++V+ L+A GAD N  +  D+ +PL  A S    E+L               + G +VNA + +G +PL+ A   NR + +  L+  GAD
Sbjct:  268 LHQARSAGTAELLIAKRAEVNAQDER-GKTPLFVATDWNRHSVVEVLLANGADPNIASEVERSPLHQA----------ESAETAELLIQKGAEVNAKDRRGKTPLFVAIENNRHSVVEVLLANGADPNIASE-DERSPLHQAESAETAELL--------------IQKGAEVNAQDERGKTPLFVATDWNRHSVVEVLLANGAD 445          
BLAST of mRNA_A-nodosum_M_contig1128.2.1 vs. uniprot
Match: A0A8B7PZ60_HIPAR (B-cell lymphoma 3 protein n=1 Tax=Hipposideros armiger TaxID=186990 RepID=A0A8B7PZ60_HIPAR)

HSP 1 Score: 79.0 bits (193), Expect = 2.390e-12
Identity = 74/246 (30.08%), Postives = 114/246 (46.34%), Query Frame = 1
Query:  433 GQTPLHGAVICGGNPET--IAALFRHGADD-GALDGRGDPPLHVALLHGKESAIAALVAGGTDINCRTSKNGLTALDWAAFLGNVDVLKMLVENGA----DVRGSGPRGDTPLHFAVRRNSVGASETSC-EAITALLLHGAEVDAAD-NFGKTPLVIAVEKEKLALVDALVAGGADVNRRNVVDDMAPLDVAASIGNLEVLKALLGGHVXXXXXXXRHGVDVNASNAKGHSPLYEAAARNRVAAIR 1143
            G TPLH AV+ G  P    + +LF+HG  +    +     PLH+A++    S +  LV  G        ++G TA   A    +   L+ L+++ A    D+      G T LH AV         T C EA+  LL  GA++DA D   G++PL+ AVE  KL++V  L+  GA+VN + +    + L  A+  G L +++ L+           R G D    N    +PL  A +R  +  +R
Sbjct:  135 GDTPLHIAVVQGNLPAVNRLVSLFQHGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVMAGAS-PMALDRHGQTAAHLACEHRSPACLRSLLDSAAPGTVDLEARNYDGLTALHVAVN--------TECHEAVLLLLERGADIDAVDIKSGRSPLIHAVENNKLSMVQLLLQHGANVNAQ-MYSGSSALHSASGRGLLHLVRMLV-----------RSGADSGLKNCHNDTPLMVARSRKVIDILR 359          
BLAST of mRNA_A-nodosum_M_contig1128.2.1 vs. uniprot
Match: A0A6P8UG67_GYMAC (LOW QUALITY PROTEIN: ankyrin repeat domain-containing protein 61-like n=3 Tax=Notothenioidei TaxID=8205 RepID=A0A6P8UG67_GYMAC)

HSP 1 Score: 78.6 bits (192), Expect = 2.690e-12
Identity = 58/160 (36.25%), Postives = 89/160 (55.62%), Query Frame = 1
Query:  484 IAALFRHGADDGA-LDGRGDPPLHVALLHGKESAIAALVAGGTDINCRTSKNGLTALDWAAFLGNVDVLKMLVENGADVR-GSGPRGDTPLHFAVRRNSVGA-----SETSCEAITALLLHGAEVDAADNFGKTPLVIAVEKEKLALVDALVAGGADVNR 942
            +  L  HG +  A ++G     LH+++ +   SA+  L   G D+N   S +G+TAL  AA + + D++  L++ GAD+  G  P G+TPLH AV   ++ A      +TSC  I+ LL  GAEV+A +N G TPL  A       LV+ L+  GA++N+
Sbjct:  123 LRLLCEHGVNLNAEVEGSQQTALHLSVRYTALSAVHILSCCGADVNAVDS-SGMTALHMAAGVLHKDIMVSLIKEGADLSMGLKPSGNTPLHLAVVAMALKAFKTQQDDTSC--ISELLERGAEVNAVNNAGMTPLHEACSMGNTELVELLLRYGANINQ 279          
BLAST of mRNA_A-nodosum_M_contig1128.2.1 vs. uniprot
Match: A0A067MYR6_9AGAM (Uncharacterized protein n=1 Tax=Botryobasidium botryosum FD-172 SS1 TaxID=930990 RepID=A0A067MYR6_9AGAM)

HSP 1 Score: 79.3 bits (194), Expect = 2.830e-12
Identity = 84/254 (33.07%), Postives = 114/254 (44.88%), Query Frame = 1
Query:  433 GQTPLHGAVICGGNPETIAALFRHGADDGALDGRGDPPLHVALLH-----GKESAIAALVAGGTDINCRTSKNGLTALDWAAFLGNVDVLKMLVENGADVRGSGPRGDTPLHFAVRRNSVGASETSCEAITALLLHGAEVDAADNFGKTPLVIAVEKEKLALVDALVAGGADVNRRNVVDDMAPLDVAASI----GNLEVLKALLGGHVXXXXXXXRHGVDVNASNAKGHSPLYEAAARNRVAAIRALVEAGAD 1167
            G TPL  A+I GG   ++  L   GAD     G+   P+   L+      G+  A+A L+    D+N R  +N    L+ AA+LG+   +K L+  GAD    G  G   LHFA         E   E + ALL  GAEVDA D    TPL+ A  K   A V AL+  GA+ +  +     +PL  AA +       E L AL+                +N  N  G +PL  AA     AA+R L++ GAD
Sbjct:  148 GNTPLSLAMI-GGLASSVRFLLSVGADPTKY-GQTSCPVPQYLIDVFNCAGEADAVATLLTASEDVNDR-DENDSRPLERAAWLGSPAAVKALLHAGADPNLPGRCGVRALHFAAELMCHPDGE---ETVAALLQAGAEVDARDGDEVTPLIYAAAKGSSAAVLALLNAGANPSLHDKWG-CSPLHTAAHLMGDPRGYEALAALI----------KTAPTTLNLVNVHGQTPLRLAAVTGSPAAVRLLLDTGAD 384          
BLAST of mRNA_A-nodosum_M_contig1128.2.1 vs. uniprot
Match: UPI001887C32D (ankyrin repeat domain-containing protein 61-like n=1 Tax=Pungitius pungitius TaxID=134920 RepID=UPI001887C32D)

HSP 1 Score: 78.6 bits (192), Expect = 2.830e-12
Identity = 56/158 (35.44%), Postives = 81/158 (51.27%), Query Frame = 1
Query:  484 IAALFRHGADDGA-LDGRGDPPLHVALLHGKESAIAALVAGGTDINCRTSKNGLTALDWAAFLGNVDVLKMLVENGADVRGSGPR-GDTPLHFA---VRRNSVGASETSCEAITALLLHGAEVDAADNFGKTPLVIAVEKEKLALVDALVAGGADVNR 942
            +  LF HG D  A  +G    PLH+++ +   SA+  L + G D+N   S +G+T L  AA + + D++  L++ GADV  +    G++PLH A   +   +    E     I  LL  GAEVDA +  G TPL  A       LVD L+  GAD+ R
Sbjct:  136 LRLLFEHGIDPNAKAEGSHQSPLHLSVRYMALSAVPILASFGADVNAVES-SGMTPLHMAAGVLHKDIMASLIKEGADVNMAVKHSGNSPLHLAAVAIAMKTTKTLEDDVGCICELLERGAEVDAVNEAGLTPLQEACRMGHGVLVDVLLRYGADIKR 292          
BLAST of mRNA_A-nodosum_M_contig1128.2.1 vs. uniprot
Match: A0A7R8WJS6_9CRUS (Hypothetical protein n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8WJS6_9CRUS)

HSP 1 Score: 79.0 bits (193), Expect = 4.190e-12
Identity = 72/248 (29.03%), Postives = 106/248 (42.74%), Query Frame = 1
Query:  439 TPLHGAVICGGNPETIAALFRHGADDGALDGRGDPPLHVALLHGKESAIAALVAGGTDINCRTSKNGLTALDWAAFLGNVDVLKMLVENGADVRGSGPRGDTPLHFAVRRNSVGASET-----------------------SCEAITALLLHGAEVDAADNFGKTPLVIAVEKEKLALVDALVAGGADVNRRNVVDDMAPLDVAASIGNLEVLKALLGGHVXXXXXXXRHGVDVNASNAKGHSPLYEA 1113
            TPLH A     +PET   L  + A     D  G  PL  A L+G+ S +  L+A G D N    +   + L  A    + +  ++L++NGA+V      G+TPL  A   +     E                        S +    L+  GAEV+A D  GKTPL +A + ++ ++V+ L+A GA     N  D+ +PL  A S    E+L               R G  VNA +  G +PL+ A
Sbjct:  156 TPLHIAA----SPETARLLLEYKAKVDVKDSDGCTPLLQATLNGRHSVVELLLAHGADPNIANREYETSPLHHAE---SAETAELLIQNGAEVNAKDICGNTPLFVATGYDCHTVVEVLLANGADPKIANEDERSPLHEARSAKTAELLIQKGAEVNAKDRRGKTPLFVATDCKRHSVVEVLLANGAHPKIANK-DERSPLHQARSAETAELL--------------IRKGAVVNAKDKYGKTPLFVA 381          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1128.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J9UWK9_BRAAE7.650e-2029.89Hypothetical protein n=1 Tax=Brassicogethes aeneus... [more]
A0A2V8L3T8_9BACT4.980e-1631.88Uncharacterized protein (Fragment) n=1 Tax=Acidoba... [more]
A0A7S3SKS7_EMIHU5.350e-1530.74Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0L850_MAGMM2.390e-1435.71Ankyrin repeat-like protein n=1 Tax=Magnetococcus ... [more]
A0A7R8WQV0_9CRUS1.640e-1232.35Hypothetical protein n=1 Tax=Cyprideis torosa TaxI... [more]
A0A8B7PZ60_HIPAR2.390e-1230.08B-cell lymphoma 3 protein n=1 Tax=Hipposideros arm... [more]
A0A6P8UG67_GYMAC2.690e-1236.25LOW QUALITY PROTEIN: ankyrin repeat domain-contain... [more]
A0A067MYR6_9AGAM2.830e-1233.07Uncharacterized protein n=1 Tax=Botryobasidium bot... [more]
UPI001887C32D2.830e-1235.44ankyrin repeat domain-containing protein 61-like n... [more]
A0A7R8WJS6_9CRUS4.190e-1229.03Hypothetical protein n=1 Tax=Cyprideis torosa TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1128contigA-nodosum_M_contig1128:52583..54510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog156889.Mmc1_1634
PFAMsAnk,Ank_2,Ank_3,Ank_4,Ank_5
Model size1167
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K15503
Hectar predicted targeting categoryother localisation
Exons2
Evalue8.92e-17
EggNOG OGsCOG0666@1|root,COG0666@2|Bacteria,1RBYV@1224|Proteobacteria,2UA2F@28211|Alphaproteobacteria
Descriptionankyrin repeat
Cds size1167
COG categoryKT
BRITEko00000,ko01009,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866525.954294-CDS-A-nodosum_M_contig1128:52582..536041680866525.954294-CDS-A-nodosum_M_contig1128:52582..53604Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1128 52583..53604 +
1680866526.066405-CDS-A-nodosum_M_contig1128:54365..545101680866526.066405-CDS-A-nodosum_M_contig1128:54365..54510Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1128 54366..54510 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1128.2.1prot_A-nodosum_M_contig1128.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1128 52583..54510 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1128.2.1

>prot_A-nodosum_M_contig1128.2.1 ID=prot_A-nodosum_M_contig1128.2.1|Name=mRNA_A-nodosum_M_contig1128.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=389bp
AGADVKGRNDRGDTLLHEAVLWDSLEATVAVLRHGADVEAVNEKGETPLH
IAAGFGKQSVFEALAEAGANIHHRASDGSSVLNMAAITGNLETLGALVRR
KVDVRAVGPSGFSSLHLAAINNKEAAIDALIAAGADVNAKSAVGGQTPLH
GAVICGGNPETIAALFRHGADDGALDGRGDPPLHVALLHGKESAIAALVA
GGTDINCRTSKNGLTALDWAAFLGNVDVLKMLVENGADVRGSGPRGDTPL
HFAVRRNSVGASETSCEAITALLLHGAEVDAADNFGKTPLVIAVEKEKLA
LVDALVAGGADVNRRNVVDDMAPLDVAASIGNLEVLKALLGGHVDVLKAL
IRHGVDVNASNAKGHSPLYEAAARNRVAAIRALVEAGAD
back to top

mRNA from alignment at A-nodosum_M_contig1128:52583..54510+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1128.2.1 ID=mRNA_A-nodosum_M_contig1128.2.1|Name=mRNA_A-nodosum_M_contig1128.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1928bp|location=Sequence derived from alignment at A-nodosum_M_contig1128:52583..54510+ (Ascophyllum nodosum dioecious)
GCTGGCGCAGATGTGAAGGGGAGAAATGACCGTGGGGATACACTCCTCCA CGAAGCTGTGTTATGGGATTCCTTGGAGGCTACCGTCGCCGTCCTGCGAC ACGGTGCGGACGTCGAAGCTGTAAATGAGAAAGGTGAGACGCCCCTACAT ATTGCGGCAGGATTTGGGAAACAGTCAGTGTTTGAAGCACTGGCGGAGGC AGGAGCGAACATTCACCATCGGGCCAGTGATGGGTCGTCTGTTCTGAATA TGGCCGCTATCACGGGAAACCTTGAAACTTTGGGAGCTCTCGTGCGGCGC AAAGTTGACGTGCGCGCCGTTGGCCCGAGCGGTTTCAGCTCCTTGCATTT GGCAGCCATAAACAACAAGGAGGCGGCGATTGATGCTCTCATAGCAGCTG GGGCCGACGTCAACGCGAAGAGCGCAGTTGGAGGACAAACACCTCTACAC GGGGCTGTAATCTGTGGGGGAAACCCCGAAACCATCGCGGCTCTCTTTCG CCATGGAGCCGACGATGGTGCATTGGACGGGAGAGGAGACCCACCTCTCC ATGTGGCCCTTTTACATGGAAAAGAGTCGGCGATTGCTGCCCTGGTAGCG GGAGGCACAGATATCAACTGCCGTACTTCAAAAAATGGACTGACGGCATT GGACTGGGCCGCTTTTCTGGGTAATGTAGATGTCTTAAAAATGCTCGTGG AGAACGGGGCGGATGTTAGAGGAAGCGGTCCCCGCGGTGATACTCCGTTG CATTTTGCAGTGAGACGCAACAGCGTGGGAGCGAGCGAAACCTCGTGCGA GGCGATCACCGCCCTCCTGCTGCACGGAGCCGAAGTGGACGCCGCGGACA ATTTCGGCAAGACGCCGCTCGTCATAGCAGTCGAGAAGGAAAAACTGGCG TTGGTTGACGCTCTTGTCGCGGGAGGTGCGGACGTCAACCGTCGTAATGT AGTAGACGATATGGCGCCCCTCGATGTGGCTGCTTCCATCGGAAATCTGG AAGTGTTGAAAGCGCTGCTCGGGTACGGATCGAGGGCAAAATCTGTGGAC TCGGTCGGCGCTACGGCTCTCCATCACGTGGCAGCTTTCGATGCAGCGGG TCTAGTCCACGCCCTCGTCGATGCCGGAGCTGATGCCAGCGCGGAGAACG CCAATGGAGTGGTGCCCATCCACAACGCGTCGATCGCGGTAGCCCTACGG CCATCATGGCTCTCACACAACGTGGAGCTGACACCGAAGCCCGAACAAAA AGTGGTTTGACGCCGCTGCAGTTCGCGGCCGAGTGTGGGAAGGTGTCGGC TATTGACGCTCTTGCTGCAGCCGGCGCAGACATTAATCTACGAACCACAA CAAACGATACCTCCGCGCTCGACCTCGCTGCCCAAAACGGAGAGGTGGAC GCCATGAACGCTCTCATCAGAAATGGAGCGAATGTGCGCGCCGGAAACGC GAGTGGTTACACTGCCTTATACTTTGTGGCGGGCGACAATCAAGCGGCGT CGATCGACTTTCTTGTTGGGGCAGGGGCAGACGTCAACGTAGAGGCTGAG CAAGGTTTCACGCCTCTGCACATTGCGTCGCTTCTCGGCCGTTCTGGGGC CGTGGGTTCCCTCTTGAAGCACAGCGCAGACAAAGACTTCACCTCGAGCA CTGGCGCGACGCCGCTTCACATGGCGGCAGAGCATGGCTGGTTGCCGGTC CTCAACGCCCTCGTGGAGGCGGGTACCAACGTCTGGCGGCGGACGCAAGA TCACATGTCCGCGCTCGACCTGGCTGCCGGTAGAGGTCACGTGGACGTTT TGAAGGCGCTCATTCGGCATGGTGTGGACGTAAACGCCAGCAACGCCAAA GGTCACAGCCCGCTATACGAAGCGGCCGCGAGAAACAGGGTGGCCGCGAT CCGCGCGCTCGTCGAGGCAGGCGCTGAC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1128:52583..54510+

>mRNA_A-nodosum_M_contig1128.2.1 ID=mRNA_A-nodosum_M_contig1128.2.1|Name=mRNA_A-nodosum_M_contig1128.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1167bp|location=Sequence derived from alignment at A-nodosum_M_contig1128:52583..54510+ (Ascophyllum nodosum dioecious)
GCTGGCGCAGATGTGAAGGGGAGAAATGACCGTGGGGATACACTCCTCCA
CGAAGCTGTGTTATGGGATTCCTTGGAGGCTACCGTCGCCGTCCTGCGAC
ACGGTGCGGACGTCGAAGCTGTAAATGAGAAAGGTGAGACGCCCCTACAT
ATTGCGGCAGGATTTGGGAAACAGTCAGTGTTTGAAGCACTGGCGGAGGC
AGGAGCGAACATTCACCATCGGGCCAGTGATGGGTCGTCTGTTCTGAATA
TGGCCGCTATCACGGGAAACCTTGAAACTTTGGGAGCTCTCGTGCGGCGC
AAAGTTGACGTGCGCGCCGTTGGCCCGAGCGGTTTCAGCTCCTTGCATTT
GGCAGCCATAAACAACAAGGAGGCGGCGATTGATGCTCTCATAGCAGCTG
GGGCCGACGTCAACGCGAAGAGCGCAGTTGGAGGACAAACACCTCTACAC
GGGGCTGTAATCTGTGGGGGAAACCCCGAAACCATCGCGGCTCTCTTTCG
CCATGGAGCCGACGATGGTGCATTGGACGGGAGAGGAGACCCACCTCTCC
ATGTGGCCCTTTTACATGGAAAAGAGTCGGCGATTGCTGCCCTGGTAGCG
GGAGGCACAGATATCAACTGCCGTACTTCAAAAAATGGACTGACGGCATT
GGACTGGGCCGCTTTTCTGGGTAATGTAGATGTCTTAAAAATGCTCGTGG
AGAACGGGGCGGATGTTAGAGGAAGCGGTCCCCGCGGTGATACTCCGTTG
CATTTTGCAGTGAGACGCAACAGCGTGGGAGCGAGCGAAACCTCGTGCGA
GGCGATCACCGCCCTCCTGCTGCACGGAGCCGAAGTGGACGCCGCGGACA
ATTTCGGCAAGACGCCGCTCGTCATAGCAGTCGAGAAGGAAAAACTGGCG
TTGGTTGACGCTCTTGTCGCGGGAGGTGCGGACGTCAACCGTCGTAATGT
AGTAGACGATATGGCGCCCCTCGATGTGGCTGCTTCCATCGGAAATCTGG
AAGTGTTGAAAGCGCTGCTCGGAGGTCACGTGGACGTTTTGAAGGCGCTC
ATTCGGCATGGTGTGGACGTAAACGCCAGCAACGCCAAAGGTCACAGCCC
GCTATACGAAGCGGCCGCGAGAAACAGGGTGGCCGCGATCCGCGCGCTCG
TCGAGGCAGGCGCTGAC
back to top