mRNA_A-nodosum_M_contig1127.21.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1127.21.1 vs. uniprot
Match: A0A6H5L9S0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9S0_9PHAE) HSP 1 Score: 211 bits (538), Expect = 4.370e-59 Identity = 115/156 (73.72%), Postives = 124/156 (79.49%), Query Frame = 2
Query: 431 MGK--GKK-GGAVRSGGGGASEFFTTDVDPRRVRYAHSKIKPVFSGCGRTIEQTLSEIRNGETKPSDLPMITVLVGPADPR-DGET----CFFSLNNRRLFVFKACREEGLLGRNGWIRVRARAMKPHERERYTLDRCSLQAKFLFAPKPSASSNP 874
MGK GKK GG GGGG F DVDPR VRYAHSKIKP FSGCGRTIEQTL EIR G+T+PSDLPMITVL+ P DP DGE CFFSLNNRRLFVFKACREEGLLG +G +RVRARA+K HERERYT+DRCSLQAKFLFAPKP ++ P
Sbjct: 1 MGKKAGKKSGGGTAIGGGG---FSMLDVDPRHVRYAHSKIKPHFSGCGRTIEQTLGEIREGKTRPSDLPMITVLLRPPDPVVDGEQQQQQCFFSLNNRRLFVFKACREEGLLGPSGLVRVRARALKAHERERYTVDRCSLQAKFLFAPKPETAAGP 153
BLAST of mRNA_A-nodosum_M_contig1127.21.1 vs. uniprot
Match: A0A835ZB41_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB41_9STRA) HSP 1 Score: 150 bits (379), Expect = 6.220e-39 Identity = 77/139 (55.40%), Postives = 99/139 (71.22%), Query Frame = 2
Query: 434 GKGKKGGAVRSGGG---GASEFFTTDVDPRRVRYAHSKIKPVFSGCGRTIEQTLSEIRNGETKPSDLPMITVLVGPADPRDGETCFFSLNNRRLFVFKACREEGLLGRNGWIRVRARAMKPHERERYTLDRCSLQAKFL 841
G G KG S G A+ F D+DP R+R+AHSKI+PVFSGCGR+++ TL EIR+G TK +DLP+ITV+ GP++ G + +FSLNNRRL+VFKAC+ EGLLG G ++VR R K HE ERYTL+RCS A +
Sbjct: 23 GAGSKGKGSSSTGKPRLSATTFVHMDIDPDRIRFAHSKIRPVFSGCGRSLQTTLEEIRSGATKITDLPVITVIEGPSE--HGSSWYFSLNNRRLWVFKACKREGLLGGEGTVKVRVRGPKDHELERYTLERCSNTATLM 159
BLAST of mRNA_A-nodosum_M_contig1127.21.1 vs. uniprot
Match: A9UYH0_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UYH0_MONBE) HSP 1 Score: 149 bits (376), Expect = 4.750e-38 Identity = 73/122 (59.84%), Postives = 91/122 (74.59%), Query Frame = 2
Query: 479 ASEFFTTDVDPRRVRYAHSKIKPVFSGCGRTIEQTLSEIRNGETKPSDLPMITVLVGPADPRDGETCFFSLNNRRLFVFKACREEGLLGRNGWIRVRARAMKPHERERYTLDRCSLQAKFLF 844
AS F T DVDPR++R+AH++IKP+FSGCGRT+ QTL E+R+G TK +D+P +TV+V P D ++SLNNRRL+VFK REEG+L I VR R MKPHE RYT D C+LQAKFLF
Sbjct: 57 ASGFTTADVDPRQIRFAHARIKPMFSGCGRTLAQTLEELRDGTTKVTDIPTVTVMVRPDDDPTLPAWYYSLNNRRLYVFKQLREEGILDT---IPVRVRGMKPHEVARYTPDNCALQAKFLF 175
BLAST of mRNA_A-nodosum_M_contig1127.21.1 vs. uniprot
Match: A0A7S2A608_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A608_TRICV) HSP 1 Score: 135 bits (339), Expect = 3.120e-33 Identity = 68/117 (58.12%), Postives = 85/117 (72.65%), Query Frame = 2
Query: 494 TTDVDPRRVRYAHSKIKPVFSGCGRTIEQTLSEIRNGETKPSDLPMITVLVGPADPRDGETCFFSLNNRRLFVFKACREEGLLGRNGWIRVRARAMKPH-ERERYTLDRCSLQAKFL 841
T VDPRR+R+ +S+I+P FSGCGR+++ TL IRNGE P DLP I VLVGP +FSLNNRRL+V K CREEGLLG + IRVR R K ERERY+++RC+L+AKF+
Sbjct: 11 TIRVDPRRIRFQYSRIRPHFSGCGRSVQGTLESIRNGEIGPGDLPPIQVLVGPEAEDGSGRWYFSLNNRRLWVLKRCREEGLLGGDNLIRVRVRDPKSAAERERYSVERCALEAKFI 127
BLAST of mRNA_A-nodosum_M_contig1127.21.1 vs. uniprot
Match: B8LD96_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LD96_THAPS) HSP 1 Score: 119 bits (299), Expect = 3.790e-27 Identity = 62/117 (52.99%), Postives = 80/117 (68.38%), Query Frame = 2
Query: 503 VDPRRVRYAHSKIKPVFSGCGRTIEQTLSEIRNGETKPSDLPMITVLVGPADPRDGETCFFSLNNRRLFVFKACREEGLLGR---NGWIRVRARAMKPH-ERERYTLDRCSLQAKFL 841
+DP RVR+ HS+I+P FSGCGR++ +TL EIR G+ KP+DLP I VL+GP +FSLNNRRL+V K C +EGLL N I VR R K E ERY++D C+L+AKF+
Sbjct: 43 IDPSRVRFQHSRIRPHFSGCGRSVVETLDEIRRGDLKPADLPPIQVLIGPEGNDGLGPWYFSLNNRRLWVLKQCYKEGLLNNSTYNNTIPVRVRLPKSDAELERYSVDNCALEAKFM 159
BLAST of mRNA_A-nodosum_M_contig1127.21.1 vs. uniprot
Match: A0A7S4SSK4_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SSK4_9STRA) HSP 1 Score: 115 bits (289), Expect = 9.170e-26 Identity = 56/119 (47.06%), Postives = 79/119 (66.39%), Query Frame = 2
Query: 503 VDPRRVRYAHSKIKPVFSGCGRTIEQTLSEIRNGETKPSDLPMITVLVGPADPRDGETC---FFSLNNRRLFVFKACREEGLLGRNGWIRVRARAMKPH---ERERYTLDRCSLQAKFL 841
VDP+ +R+ HS+I+P FSGCGR++ T+ +IRNG+ P+DLP I V+VG +FSLNNRRL++FK CREEGLL R++ R P E +RYT++ C+L+AKF+
Sbjct: 29 VDPKLIRFQHSRIRPYFSGCGRSVSDTMEQIRNGDVSPNDLPTIQVIVGQXXXXXXXXXMPWYFSLNNRRLWIFKKCREEGLLQHPHVNRIKVRIKVPKSQTELQRYTVENCALEAKFI 147
BLAST of mRNA_A-nodosum_M_contig1127.21.1 vs. uniprot
Match: K0SIP0_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SIP0_THAOC) HSP 1 Score: 115 bits (289), Expect = 1.220e-24 Identity = 80/194 (41.24%), Postives = 106/194 (54.64%), Query Frame = 2
Query: 503 VDPRRVRYAHSKIKPVFSGCGRTIEQTLSEIRNGETKPSDLPMITVLVGPADPRDGE-TCFFSLNNRRLFVFKACREEGLLGRNGW---IRVRARAMKPH-ERERYTLDRCSLQAKFLFAPKPSASSNPSNGVASSDASGTAGKPDQEKATPGGTTRRGGLQ-GEPSASAGILLHEGEDDVGAFRSSPQRDAMD 1066
V P RVRY HS+I+P FSGCGR++ TL EIR G +PS LP I VLVGP D DG +FSLNNRRL+V K C EGLL + I+VR R K ERERY++ CSL AKF+ +P T GK +KA + GG + G A +++H+ E ++ +S + ++ D
Sbjct: 174 VCPTRVRYQHSRIRPHFSGCGRSVVGTLDEIRGGRLEPSALPPIQVLVGP-DGDDGMGPWYFSLNNRRLWVLKQCHREGLLDNERYGNMIQVRVRVPKSDSERERYSVKNCSLDAKFMREGRPKQ---------------TDGKTFDKKAEV--DEQNGGKEYGHARAKDNLVIHQVEKEISQLEASSESESED 349
BLAST of mRNA_A-nodosum_M_contig1127.21.1 vs. uniprot
Match: A0A1E7FEU0_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEU0_9STRA) HSP 1 Score: 111 bits (277), Expect = 7.070e-24 Identity = 64/137 (46.72%), Postives = 87/137 (63.50%), Query Frame = 2
Query: 503 VDPRRVRYAHSKIKPVFSGCGRTIEQTLSEIRNGETKPSDLPMITVLVGP-ADPRDGETCFFSLNNRRLFVFKACREEGLLGRNG-WIRVRARAMKPH-ERERYTLDRCSLQAKFLFAPKPSASSNPSNGVASSDAS 904
VDP R R+ HSKI+PVFSGCGR + Q L +I++G+T DLP I VLVG +D DG +FSLNNRRL++ K R G L + G ++VR R K ERERY++ C+L AK + KP ++ VA+++ S
Sbjct: 34 VDPARCRFQHSKIRPVFSGCGRDVTQVLEDIKSGKTDLQDLPPIQVLVGDYSDDEDGSIWYFSLNNRRLWILKQLRAGGYLEKQGNKVKVRVRRPKSQSERERYSIANCALNAKIMVE-KPRKKKEKTSAVAATNKS 169
BLAST of mRNA_A-nodosum_M_contig1127.21.1 vs. uniprot
Match: A0A6B2LQW6_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LQW6_9EUKA) HSP 1 Score: 94.0 bits (232), Expect = 2.670e-19 Identity = 54/110 (49.09%), Postives = 75/110 (68.18%), Query Frame = 2
Query: 518 VRYAHSKIKPVFSGCGRTIEQTLSEIRNGETKPSDLPMITVLVGPADPRDGETCFFSLNNRRLFVFKACREEGLLGRNGWIRVRARAMKPHERE--RYTLDRCSLQAKFL 841
+R+ HSKIKP+FS GRT+E TLSEI G+ KP +LP I V +D +T +FS+NNRRL+VFK CR+ GLL + + R R M ++R+ R+T +RC+L AKF+
Sbjct: 2 IRFTHSKIKPIFSD-GRTVEGTLSEISEGKLKPENLPKIVV-----HKQDDKT-YFSMNNRRLWVFKECRKRGLLEK---VPERIRPMPTNKRQKNRFTTERCALNAKFM 101
BLAST of mRNA_A-nodosum_M_contig1127.21.1 vs. uniprot
Match: A0A0A1TN86_9HYPO (Uncharacterized protein n=1 Tax=Torrubiella hemipterigena TaxID=1531966 RepID=A0A0A1TN86_9HYPO) HSP 1 Score: 86.3 bits (212), Expect = 2.060e-16 Identity = 53/117 (45.30%), Postives = 73/117 (62.39%), Query Frame = 2
Query: 497 TDVDPRRVRYAHSKIKPVFSGCGRTIEQTLSEIRNGETKPSDLPMITVLVGPADPRDGETCFFSLNNRRLFVFKACREEGLLGRNGWIRVRARAMKPHER--ERYTLDRCSLQAKFL 841
T VDP+ V + S+++P FS CGR IE TL+ IRN E + DLP I+VL+ DP G+ FSLNNRRLFVFK + EGLL + VR + + +R ++YT D+C A+ +
Sbjct: 4 TRVDPKDVYFTFSRLRPKFS-CGRRIEDTLNAIRNKELRAEDLPPISVLL---DPTTGD--MFSLNNRRLFVFKTLQAEGLLET---VPVRTKPVPQTKRMKDKYTSDKCVKMARLM 111 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1127.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1127.21.1 >prot_A-nodosum_M_contig1127.21.1 ID=prot_A-nodosum_M_contig1127.21.1|Name=mRNA_A-nodosum_M_contig1127.21.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=227bp MGKGKKGGAVRSGGGGASEFFTTDVDPRRVRYAHSKIKPVFSGCGRTIEQback to top mRNA from alignment at A-nodosum_M_contig1127:236269..241393- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1127.21.1 ID=mRNA_A-nodosum_M_contig1127.21.1|Name=mRNA_A-nodosum_M_contig1127.21.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5125bp|location=Sequence derived from alignment at A-nodosum_M_contig1127:236269..241393- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1127:236269..241393- >mRNA_A-nodosum_M_contig1127.21.1 ID=mRNA_A-nodosum_M_contig1127.21.1|Name=mRNA_A-nodosum_M_contig1127.21.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=681bp|location=Sequence derived from alignment at A-nodosum_M_contig1127:236269..241393- (Ascophyllum nodosum dioecious)back to top |