mRNA_A-nodosum_M_contig1127.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1127.1.1
Unique NamemRNA_A-nodosum_M_contig1127.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1127.1.1 vs. uniprot
Match: A0A6H5L7I9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7I9_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 3.180e-15
Identity = 60/131 (45.80%), Postives = 76/131 (58.02%), Query Frame = 3 
Query:    6 WTDEVLEEFLDSTMVQGTGLVLTKLCS-GSRKTQGERIMTYNPGTSELLWKSSGVLHKEGGMKAKAIDDVKREGTIVRILYSATAAEGGPRRRGSKTFLRRTKASEQKVFQATAERDAQILQEILLLLRQK 395
            WTD+VLE FL ST+V G+GLVL KL S GS K  GERI++Y+P    L W S+G+  K G M AK I +V  EGT    L       G  RRR              KV+  + ERDAQIL+E+LL +R++
Sbjct:  167 WTDDVLEGFLYSTLVDGSGLVLDKLDSDGSGKKSGERILSYDPDQMRLNWISTGLRRKTGSMLAKDIGEVTCEGTSASKL-------GLDRRR--------------KVYSTSQERDAQILKELLLFVRRQ 276
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1127.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L7I9_9PHAE3.180e-1545.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1127contigA-nodosum_M_contig1127:888..3499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1738
Hectar predicted targeting categoryother localisation
Exons3
Cds size456
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866525.4138358-UTR-A-nodosum_M_contig1127:887..21251680866525.4138358-UTR-A-nodosum_M_contig1127:887..2125Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1127 888..2125 -
1680866525.4592662-UTR-A-nodosum_M_contig1127:3455..34991680866525.4592662-UTR-A-nodosum_M_contig1127:3455..3499Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1127 3456..3499 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866525.4273431-CDS-A-nodosum_M_contig1127:2125..24281680866525.4273431-CDS-A-nodosum_M_contig1127:2125..2428Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1127 2126..2428 -
1680866525.4356294-CDS-A-nodosum_M_contig1127:2894..29841680866525.4356294-CDS-A-nodosum_M_contig1127:2894..2984Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1127 2895..2984 -
1680866525.445934-CDS-A-nodosum_M_contig1127:3392..34551680866525.445934-CDS-A-nodosum_M_contig1127:3392..3455Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1127 3393..3455 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1127.1.1prot_A-nodosum_M_contig1127.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1127 2126..3455 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1127.1.1

>prot_A-nodosum_M_contig1127.1.1 ID=prot_A-nodosum_M_contig1127.1.1|Name=mRNA_A-nodosum_M_contig1127.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=152bp
MVQGTGLVLTKLCSGSRKTQGERIMTYNPGTSELLWKSSGVLHKEGGMKA
KAIDDVKREGTIVRILYSATAAEGGPRRRGSKTFLRRTKASEQKVFQATA
ERDAQILQEILLLLRQKERDAEDAVTRAKNEHGSFGGSPPQSRGGRTQPS
V*
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mRNA from alignment at A-nodosum_M_contig1127:888..3499-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1127.1.1 ID=mRNA_A-nodosum_M_contig1127.1.1|Name=mRNA_A-nodosum_M_contig1127.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2612bp|location=Sequence derived from alignment at A-nodosum_M_contig1127:888..3499- (Ascophyllum nodosum dioecious)
GGCATTGGACAGATGAAGTGCTTGAGGAATTCTTAGACTCGACGATGGTG
CAAGGTACAGGCCTCGTGCTGACAAAGCTTTGCAGCGGAAGTCGAAAGAC
GCAGGGGGTGAGAACATCAATTCGTTTTAGAGTAACGTACCTGTACCGTA
GCGTCTAGGCCCGATGCCTTGATTTGTATACAATGTGTTCACTTCAACTG
TACATAACCGCGCCGTCCGACCCTGCCATACGGGTCAGTCTACGCTGCAC
CTCGTACACTGTACCGTATCGCCCTTTACATTTTGGCGTATCGAAATAAT
GTGCGTGTGTGTATGTGCTTGCGCGGTGCATGTGTGTGTAAGTGTGCACG
TATTGTTTGGCATTCCCGCTTGGAATGGCTCATGTTGCACCAAGCAAGGC
TTGAACGCATACAGCCTTGGCGTCACGAACCTTGATGTTCTTGAGGTTAT
ATCATGAACATCAACATAATGGAATAAAGCTAGAAGGCTGAACGCGCCTT
GCTGCCCGTCTACAGGAGCGCATCATGACCTACAACCCGGGCACGAGCGA
GCTCCTCTGGAAGTCATCCGGCGTCTTACACAAAGAGGGGGGCATGAAGG
CAAAGGTAAATCGTTGTCAAGGTTCACACCGTCGGTAGGACGGCATAAGC
AGGCGTTGGAATCTACGACATTCCCTGCGAAGCAATCGGCAGTTGCTTTT
GTTTTTCACACGTGGTGAGGTGACTTCTTTCCGGGGGGACGAGAACCGGC
CGACAAAGTCGGACAATCTCGGAGAGGCGTGATTTCGTACAAATAACCTT
GCTCAAATATTTTGACGGACTGGAATGTCGGCGCAACCCCTAGCGTAGGT
GCGGAATCTCAAGGCATCCGTGCAGCAGTAATTGTAGGGGCGCACACCTT
AAAGTAAGGATACAATGATAAACGTTGGTGCTATATTCTACTGCAGTCGA
TGACTCACCGAGTAGCGCAACGCAAAAGGTGGTGACGACGCTATACCCGG
TGGTCTCTGCGAGAGGCACCTGACTTCTCTGTGCCCACTTCTCGAATCGC
CACTTACACATGTGTGGGCAGGCTATTGATGACGTCAAGCGCGAGGGCAC
GATCGTAAGGATACTCTACTCGGCCACTGCGGCGGAGGGCGGCCCGAGGA
GGAGAGGGAGCAAAACCTTCCTGCGTCGGACTAAGGCGAGCGAACAGAAG
GTGTTCCAAGCTACGGCCGAGCGCGACGCGCAAATCCTGCAAGAGATACT
GCTGCTCTTGCGCCAGAAAGAGCGAGACGCCGAAGATGCGGTCACCCGCG
CGAAGAACGAGCACGGGTCATTCGGCGGGTCACCGCCGCAGAGTAGGGGA
GGCAGGACCCAGCCGTCTGTGTGAAGATTTCGCGTAAGGACATCTCGGCG
ACGTTCTAAATGCACGAGTAATAAATTACGGTCTTGCGTATGCCGTTCTG
ACGCGTCCAACCGCTGAAGAACCAACGATCGATTCGAGCCTAACCTAGAT
ATTCGTGCACGCGCCCAATCCTAGCCACCTGCCTAATAGGGAGAGGGGGG
AAGATTGTCACCATGCGCCTCGATGGGTGTAGTTCGGATGCGAGCATTAT
ATTGTCAGGCCAGTGCCTCCTGGAACTGGGGAGAGGCCTTAATTTTCGTA
GATGTTTTCGTGGGCTGCGGAGGCGCTGCTAGGTACACCTTTGGGGGCAT
CAGCGCAATTTCAACCCAAGATCAGCTATGGGAGTGTAAGTACTCGTCAA
AGTGGCGGGTCAACGACATGGTGTTGGGAGCTCTAGATCGGTTGCAGATG
TACAATTGTTTTACTCGTCGACTCAAAAGAAGGGAGGGTGAAACATGCAT
GGTATATTCTATTCCTTGGGGGAGGTTTCATGCAGCCGAAGATCAGCTAT
GTATGTGTAAGTACTCGTCAAGGTGGCTGGTCAACGGCATGGTGCTGGGA
GCTCTAGATCGGTTGCCGATGCGCTATTTATGACTTGTCGACTCAAGAGA
AGGGAGGACGAAACTTGCGTGATTAATCTTTCGCTCAGGGGAGGTTTCAC
GTAGCCGAAGATCAGCTATGTATGTATAAGTACTCGTAAAAGTGGCTGGT
CAACGGCATGGTGTTGGGAAATCTAGATTGGCTGCAGATGTACTATTTCT
TACTTGTCGACTCAAGAGAAGGGAGGACGAAACTTGCGTGATTAATCTAT
CCCTTGGGGGAGGTTTCATGTAGCCGAGGATCAGCTATGTATGCATAAGT
ACTCGTAAAAAAGTGGCTGGTCAACGGCATGCGGTGTTGAGAGATCTAGA
TCGGTTGCAGAAGTACTATTTCTTACTTGTCGACTCAGGAGAAAGGAGGG
CGAAACTTGCGTGATATAATCTATCTATCCCTTGGGGGAGGTTTCACGAG
AAGGAGAGACACAAATGGAACAAGATAATCGTTAGTGGGGCGAAAACACG
CGGGGTGCTTTGACTTGGAGCGGGCCCGAGGTGGATAATAGCTAAAAAAC
ATCTGCGACTACTCTGCTTTGTTCAGTTCCAACTTTCAAAATCAACCAGA
GTGTCACTCGAGGCTTTAAGGTTAACTTGCGTGATCGATCTACTTTTTCA
TGCACTACGCAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1127:888..3499-

>mRNA_A-nodosum_M_contig1127.1.1 ID=mRNA_A-nodosum_M_contig1127.1.1|Name=mRNA_A-nodosum_M_contig1127.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at A-nodosum_M_contig1127:888..3499- (Ascophyllum nodosum dioecious)
ATGGTGCAAGGTACAGGCCTCGTGCTGACAAAGCTTTGCAGCGGAAGTCG
AAAGACGCAGGGGGAGCGCATCATGACCTACAACCCGGGCACGAGCGAGC
TCCTCTGGAAGTCATCCGGCGTCTTACACAAAGAGGGGGGCATGAAGGCA
AAGGCTATTGATGACGTCAAGCGCGAGGGCACGATCGTAAGGATACTCTA
CTCGGCCACTGCGGCGGAGGGCGGCCCGAGGAGGAGAGGGAGCAAAACCT
TCCTGCGTCGGACTAAGGCGAGCGAACAGAAGGTGTTCCAAGCTACGGCC
GAGCGCGACGCGCAAATCCTGCAAGAGATACTGCTGCTCTTGCGCCAGAA
AGAGCGAGACGCCGAAGATGCGGTCACCCGCGCGAAGAACGAGCACGGGT
CATTCGGCGGGTCACCGCCGCAGAGTAGGGGAGGCAGGACCCAGCCGTCT
GTGTGA
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