mRNA_A-nodosum_M_contig1124.26.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1124.26.1
Unique NamemRNA_A-nodosum_M_contig1124.26.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1124.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1124contigA-nodosum_M_contig1124:258602..259106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size185
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size174
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866523.4590833-UTR-A-nodosum_M_contig1124:258601..2586121680866523.4590833-UTR-A-nodosum_M_contig1124:258601..258612Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1124 258602..258612 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866523.4727116-CDS-A-nodosum_M_contig1124:258612..2587321680866523.4727116-CDS-A-nodosum_M_contig1124:258612..258732Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1124 258613..258732 +
1680866523.4833984-CDS-A-nodosum_M_contig1124:259052..2591061680866523.4833984-CDS-A-nodosum_M_contig1124:259052..259106Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1124 259053..259106 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1124.26.1prot_A-nodosum_M_contig1124.26.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1124 258613..259106 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1124.26.1

>prot_A-nodosum_M_contig1124.26.1 ID=prot_A-nodosum_M_contig1124.26.1|Name=mRNA_A-nodosum_M_contig1124.26.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=58bp
MFGRPGSAAAGAEGEEEDPVEQQISEELLRYQALFTHPDELDPSEVLTYW
AKKGKHAF
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mRNA from alignment at A-nodosum_M_contig1124:258602..259106+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1124.26.1 ID=mRNA_A-nodosum_M_contig1124.26.1|Name=mRNA_A-nodosum_M_contig1124.26.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=505bp|location=Sequence derived from alignment at A-nodosum_M_contig1124:258602..259106+ (Ascophyllum nodosum dioecious)
ACACGTTTTCCATGTTCGGCCGACCTGGCAGTGCAGCAGCGGGAGCCGAG
GGAGAGGAGGAAGACCCGGTGGAGCAACAGATTTCTGAGGAGCTGCTACG
GTACCAGGCGTTGTTCACACACCCGGATGAGGTGAGAAATACAAATACAT
GGTCGCAAATATTAAATATTAATATGATACATTTACTTTTCGAAACGAGT
GTTCGTTTTGTGCAGGCAGTGCAAATATATGGGGTTTTCTTTTCTTAACA
ACTTATAACTATGCGTTCACGTCGTCGCATTTCCATATGGAAGTAGCAAA
TAGTAATAGTCAAGTTCAATCTTGATATTGCAATGTACGCCGACACGACT
TGCTTTATGATTCGAAGTTTTCAAGTAGTTTTGTTTTGTTTTGTTCTCGC
CTGAACGCCCCCCCCTTACCTTTTCCGTTCTTTTTCCACATTACTCTTCA
GCTGGACCCAAGCGAAGTGCTGACGTATTGGGCGAAGAAGGGAAAGCATG
CCTTC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1124:258602..259106+

>mRNA_A-nodosum_M_contig1124.26.1 ID=mRNA_A-nodosum_M_contig1124.26.1|Name=mRNA_A-nodosum_M_contig1124.26.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=174bp|location=Sequence derived from alignment at A-nodosum_M_contig1124:258602..259106+ (Ascophyllum nodosum dioecious)
ATGTTCGGCCGACCTGGCAGTGCAGCAGCGGGAGCCGAGGGAGAGGAGGA
AGACCCGGTGGAGCAACAGATTTCTGAGGAGCTGCTACGGTACCAGGCGT
TGTTCACACACCCGGATGAGCTGGACCCAAGCGAAGTGCTGACGTATTGG
GCGAAGAAGGGAAAGCATGCCTTC
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