mRNA_A-nodosum_M_contig112.45.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig112.45.1
Unique NamemRNA_A-nodosum_M_contig112.45.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig112.45.1 vs. uniprot
Match: D8LCL4_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL4_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 4.470e-8
Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:  115 AKARDDAIVAVMQKMERSIKRAVDVVEVDSSVPMHLQKINPFSGD-DGFSCSSC 273
            AKARD   V +M KM + +K AV  VEVD+S+P  L+KINPFS D + F+C+SC
Sbjct: 1189 AKARDAQTVQLMAKMVKPLKDAVGKVEVDTSIPTFLEKINPFSSDGESFNCASC 1242
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BLAST of mRNA_A-nodosum_M_contig112.45.1 vs. uniprot
Match: A0A6H5K2H3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2H3_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 2.050e-7
Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:  115 AKARDDAIVAVMQKMERSIKRAVDVVEVDSSVPMHLQKINPFSGD-DGFSCSSCHQ 279
            AKARD   + +M KM + +K A   VEVD+S+P  L+KINPFS D + F+C+SC++
Sbjct:  375 AKARDAQTMQLMAKMVKPLKDAAGRVEVDTSIPTFLEKINPFSSDGESFNCASCNE 430
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig112.45.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCL4_ECTSI4.470e-855.56ATP-dependent DNA helicase n=1 Tax=Ectocarpus sili... [more]
A0A6H5K2H3_9PHAE2.050e-750.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig112contigA-nodosum_M_contig112:603025..605199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LCL4
PFAMsHelitron_like_N,PIF1
Model size359
Max annot lvl2759|Eukaryota
KEGG koko:K15255
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.9e-09
EggNOG OGsCOG0507@1|root,KOG0987@2759|Eukaryota
EC3.6.4.12
DescriptionG-quadruplex DNA unwinding
Cds size255
COG categoryL
BRITEko00000,ko01000,ko03029,ko03032
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866520.03642-UTR-A-nodosum_M_contig112:603024..6030571680866520.03642-UTR-A-nodosum_M_contig112:603024..603057Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig112 603025..603057 +
1680866520.0837526-UTR-A-nodosum_M_contig112:605128..6051991680866520.0837526-UTR-A-nodosum_M_contig112:605128..605199Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig112 605129..605199 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866520.0539935-CDS-A-nodosum_M_contig112:603057..6031391680866520.0539935-CDS-A-nodosum_M_contig112:603057..603139Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig112 603058..603139 +
1680866520.0625365-CDS-A-nodosum_M_contig112:604523..6046831680866520.0625365-CDS-A-nodosum_M_contig112:604523..604683Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig112 604524..604683 +
1680866520.0755355-CDS-A-nodosum_M_contig112:605115..6051281680866520.0755355-CDS-A-nodosum_M_contig112:605115..605128Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig112 605116..605128 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig112.45.1prot_A-nodosum_M_contig112.45.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig112 603058..605128 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig112.45.1

>prot_A-nodosum_M_contig112.45.1 ID=prot_A-nodosum_M_contig112.45.1|Name=mRNA_A-nodosum_M_contig112.45.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=85bp
MGEAEMLSALAPLLEDRGTAEEGMGRTAKARDDAIVAVMQKMERSIKRAV
DVVEVDSSVPMHLQKINPFSGDDGFSCSSCHQTD*
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mRNA from alignment at A-nodosum_M_contig112:603025..605199+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig112.45.1 ID=mRNA_A-nodosum_M_contig112.45.1|Name=mRNA_A-nodosum_M_contig112.45.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2175bp|location=Sequence derived from alignment at A-nodosum_M_contig112:603025..605199+ (Ascophyllum nodosum dioecious)
GCAGTAAATGCTGCTGCTGCTGCCCCTGGTGTGATGGGTGAGGCAGAAAT
GCTGTCTGCGCTGGCGCCATTGCTGGAGGATCGTGGCACAGCAGAGGAGG
GAATGGGACGTACAGGTGAGACGAGTGTGGAGTTCAGATTAGTTTGGGAG
GGGGAGAGTGACGGAAACATAAGTGAAAGGGAGTGAAGACAAAAGAGGAG
AGCTGTTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAACGGTTGAAATTGG
GAAAATATCATATGTAAGATGGAATTTTACTCGAGCTTTTTTTTTGGGAA
TCCAGCGGTGAAAGAAAGTTGACAAGACCGCATTTGATGAGAGAAAAAGT
CTAGGGGGTTGAAGCGTGGTGCAGTACCCTGCCCCCTATTAATAGCAGCG
GAGAAATTCGGTTTTGGATGTAAAGAGGCGTTCTCATACAACCAAAACGA
TAAAATTATGCATAAAGCGAAATAGGATTAATAATACTTACAATGTATCG
CTGGACGAAAAAAATCGAAAATACGGCACAAGATTGAAAAAAAAACATAC
CCCTTTATAAATACACTATATACTAAACTATAAAACTAAATTCGGATTTG
AATGTAAAGGGGTGTGTTCTCAAATAATCCAAAACGATAAAATGATGTGT
AAAGGGGAATATGGCTAATAATACTACCAATGTATCGCTGGACGGAAAAA
AACGAAAATACGGCGTAAGATTTAAAAAACAAAAATAAAATTTCACGATC
GAAAATCTCTCACCAACCATGGAAGGACTGGTGACTACTTGGTCTCTTCC
TCCCCCTGTTGTCTATTTTTTACTATTATACAAAACTGCTGTGACAATGC
GACCCTTTTTAATACCACGAGTATCGTACATCCCGTGTTGTACCATGTTG
TACCATGTTGTCTTGTTCACTTATCAACAAGTCACTTTTTGCCGCGTTCC
GTGCTAACAGTAGTAACGTATGGTGCAGTCTAATATACAAGTACTGTCTG
TTGGTAGAGTGACAGTATATGCTCGTTTTTTTGTCAAAATAGTATGTATT
GATAGTGGAGTACAGCAATATAGTGTATGCTCTTTTTTATTACCCCCCCC
CCCCCCCTCGATAAAAAAAGGGTGGCTGTTAAATCTTTCTACTGTAATAT
AGAAAGACCAAAAATACAAGACAAAAACGCAACGATTGTTGTTCAAACAC
CTAGGAGCATCTATAGTAAGTGGCGCTACAGGTAACACTCCTTTAGACTA
CAGGTTGAGTTGTTTGCTTCCTTCTCTTTTCAGTGTTTGAGTGCTGTACA
GTACACTCTTGTCTGTCTATACTCTAGTCTAGATCTATCTAATTTTTCAT
CCATCTCGGGGATCCATAAAAAATGTAGACTTGTATTTTATCAGAAGCGT
GTTGGAAAATTACGTCCTTTTAGCCTGCGGGACAAATAGTTACACGGAGT
ACAACCTTTCCCCATCCCCCGTCCCCCTCGCGCGTTTTTAATTACGCAGC
CAAGGCGAGAGACGACGCGATCGTGGCCGTGATGCAGAAGATGGAGAGAT
CGATCAAGAGAGCCGTTGACGTGGTCGAGGTGGATTCCTCCGTCCCCATG
CACCTTCAGAAGATCAATCCCTTCTCGGGGGACGACGGATTCTCGTGCTC
CTCTTGCCAGTGAGTGAGGCGTTTTTGCGTAAGGGGATAGGGGATGTGTT
GCTTGAATCAAGGCTTCCCTGGTGGACGACCGATTCCCGTGCTGGTCTTT
CGAGTTAGGGAGGCGTTTTGTACGAGGGAGCAGGGGATGTGTTCCACGGG
CTGGGGAGTGTGCGTCAATGCCTGCCCGGGGGACAAGTTCTCGTACTTCT
CTCGTGAGTGAAGGAGGCGTTTTACATTAGGGGATCGGAAGTGTTCTCTT
AAGAAGTCCGGAAAAGATATCATCAATCTCTTCTCGAGCTCGGTTTTCAT
ATTAGGGGACGATGGCTGTTTTAAGGTGCAGGTTAAAATGTCAACCCGTG
TTAATGCTTCCCGGCTACGGGAAAAGGAAAAATATGTGACCTTCCTCCTG
TGTGACCTTCCTCTGTGACCCCGGCTGATGCGTCCACAAAGCCAGACCGA
CTGACATGAGGGCACAGCCGGTGTCGGAACTGGGTTCGAAGACTACATCT
TCCCAACCACACTTAATCGGAGCGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig112:603025..605199+

>mRNA_A-nodosum_M_contig112.45.1 ID=mRNA_A-nodosum_M_contig112.45.1|Name=mRNA_A-nodosum_M_contig112.45.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=255bp|location=Sequence derived from alignment at A-nodosum_M_contig112:603025..605199+ (Ascophyllum nodosum dioecious)
ATGGGTGAGGCAGAAATGCTGTCTGCGCTGGCGCCATTGCTGGAGGATCG
TGGCACAGCAGAGGAGGGAATGGGACGTACAGCCAAGGCGAGAGACGACG
CGATCGTGGCCGTGATGCAGAAGATGGAGAGATCGATCAAGAGAGCCGTT
GACGTGGTCGAGGTGGATTCCTCCGTCCCCATGCACCTTCAGAAGATCAA
TCCCTTCTCGGGGGACGACGGATTCTCGTGCTCCTCTTGCCACCAGACCG
ACTGA
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