prot_A-nodosum_M_contig112.45.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig112.45.1
Unique Nameprot_A-nodosum_M_contig112.45.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length85
Homology
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BLAST of mRNA_A-nodosum_M_contig112.45.1 vs. uniprot
Match: D8LCL4_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL4_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 1.770e-8
Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 0 
Query:   28 AKARDDAIVAVMQKMERSIKRAVDVVEVDSSVPMHLQKINPFSGD-DGFSCSSC 80
            AKARD   V +M KM + +K AV  VEVD+S+P  L+KINPFS D + F+C+SC
Sbjct: 1189 AKARDAQTVQLMAKMVKPLKDAVGKVEVDTSIPTFLEKINPFSSDGESFNCASC 1242
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BLAST of mRNA_A-nodosum_M_contig112.45.1 vs. uniprot
Match: A0A6H5K2H3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2H3_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 8.320e-8
Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = 0 
Query:   28 AKARDDAIVAVMQKMERSIKRAVDVVEVDSSVPMHLQKINPFSGD-DGFSCSSCHQ 82
            AKARD   + +M KM + +K A   VEVD+S+P  L+KINPFS D + F+C+SC++
Sbjct:  375 AKARDAQTMQLMAKMVKPLKDAAGRVEVDTSIPTFLEKINPFSSDGESFNCASCNE 430
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig112.45.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCL4_ECTSI1.770e-855.56ATP-dependent DNA helicase n=1 Tax=Ectocarpus sili... [more]
A0A6H5K2H3_9PHAE8.320e-850.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig112contigA-nodosum_M_contig112:603058..605128 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig112.45.1mRNA_A-nodosum_M_contig112.45.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig112 603025..605199 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig112.45.1 ID=prot_A-nodosum_M_contig112.45.1|Name=mRNA_A-nodosum_M_contig112.45.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=85bp
MGEAEMLSALAPLLEDRGTAEEGMGRTAKARDDAIVAVMQKMERSIKRAV
DVVEVDSSVPMHLQKINPFSGDDGFSCSSCHQTD*
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