prot_A-nodosum_M_contig1118.6.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1118.6.1
Unique Nameprot_A-nodosum_M_contig1118.6.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length459
Homology
BLAST of mRNA_A-nodosum_M_contig1118.6.1 vs. uniprot
Match: D8LML6_ECTSI (GBP1, guanylate-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LML6_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 2.350e-18
Identity = 88/303 (29.04%), Postives = 139/303 (45.87%), Query Frame = 0
Query:   11 GQRAGAFGHLVLLLRDVPLDGEKEVYSIVFENEEPDDVGTDEEARGMKERNKIRDILREAFKTIRVVCMPPRHADIGVRSVGVDEVEPSFAAKLSGLRDKLSVILREPHQFGGQPVVGGAMFTSLLSDLCKRVNQGAKDIVPLGLMEAIHQGRAQSALEQASQKFKTTI-SAFEGGPAQSMAATANILKQAEKSALEKFALDTQGLDERAVTKAHATLDATIRELTMACKTRQEKRVAVAKTKVLEIMESATRKIDEDMKVILSKLPITQGTAA--LNRLWAQKCQEWHEFLKHSIEMEVPVG 310
            G+R  AFGHL++LLRDV      E  + V   E+ +D+   E A+   ERN IR  L++AF++I    MP  HA+I   +V +  V P F+A L  LR  ++  L   H F  + + GG     ++  LCK +N+  K I P  ++EAI   R    +++A  +F   + S F G  A S   T   L +A K  L++F++ ++G+    V  A   L+  +          QE +    K+++  I       + E  +     LP+ Q       N+L A    E    +K  +    P G
Sbjct:  290 GKREHAFGHLIILLRDVT-GRAAETEAFVMGIEDTEDLSF-EAAKDGAERNLIRTTLKKAFESITFHTMPSPHANIERGAVPLSAVTPEFSASLGQLRRIIAGYLASSHTFAKKEIAGGQRMNDIVGGLCKSINETGK-ICPPSVLEAIDIARVDQEVQRALVEFDKMLGSTFGGHFALSTLETNTALDEARKHVLQQFSVASEGISVGIVEDAKKELEDRVSPKAEVVSRNQESKRHELKSRMRAIACGHEANVAEKARAF--SLPLDQNVLEDQWNQLVASHFGELELDIKSLVTENTPTG 587          
BLAST of mRNA_A-nodosum_M_contig1118.6.1 vs. uniprot
Match: A0A836CEI3_9STRA (GBP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEI3_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 7.010e-14
Identity = 58/180 (32.22%), Postives = 87/180 (48.33%), Query Frame = 0
Query:    1 MSEAATFIYRGQRAGAFGHLVLLLRDVPLDGEKEVYSIVFENE--------------EPDDVGTDEEARGMKERNKIRDILREAFKTIRVVCMPPRHADIGVR-SVGVDEVEPSFAAKLSGLRDKL-SVILREPHQFGGQPVVGGAMFTSLLSDLCKRVNQGAKDIVPLGLMEAIHQGRA 164
            M  AA  + R  R  AFGHLV++LRD       E + I+F  E               P+D  TD+    M++RN  R+ L+ AF +  +  +P  H +   R ++ + +    F     GLR  + S + R PH FG + V+  A+    L  + K VN GAKD+ P  ++EA+H  RA
Sbjct:  195 MKAAADIVDRSNRKNAFGHLVVVLRDCT-SSRHECFDIIFGMEASGCVYLPLPDSVISPEDADTDKAEAAMRDRNCAREALKRAFTSTALFTLPVPHPEATRRGALPISDATQDFVDAAEGLRAHIVSCLARPPHAFGNE-VITSAIACGALPGIVKAVNDGAKDLSPPTIVEALHMSRA 372          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1118.6.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LML6_ECTSI2.350e-1829.04GBP1, guanylate-binding protein n=1 Tax=Ectocarpus... [more]
A0A836CEI3_9STRA7.010e-1432.22GBP domain-containing protein n=1 Tax=Tribonema mi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 380..425
NoneNo IPR availableCOILSCoilCoilcoord: 329..371
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 1..147
e-value: 1.3E-6
score: 29.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1118contigA-nodosum_M_contig1118:175142..180192 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1118.6.1mRNA_A-nodosum_M_contig1118.6.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1118 164045..180539 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1118.6.1 ID=prot_A-nodosum_M_contig1118.6.1|Name=mRNA_A-nodosum_M_contig1118.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=459bp
MSEAATFIYRGQRAGAFGHLVLLLRDVPLDGEKEVYSIVFENEEPDDVGT
DEEARGMKERNKIRDILREAFKTIRVVCMPPRHADIGVRSVGVDEVEPSF
AAKLSGLRDKLSVILREPHQFGGQPVVGGAMFTSLLSDLCKRVNQGAKDI
VPLGLMEAIHQGRAQSALEQASQKFKTTISAFEGGPAQSMAATANILKQA
EKSALEKFALDTQGLDERAVTKAHATLDATIRELTMACKTRQEKRVAVAK
TKVLEIMESATRKIDEDMKVILSKLPITQGTAALNRLWAQKCQEWHEFLK
HSIEMEVPVGLHEDLQPCVPPLVSFQSSMNGKLEQLQAVNQQLMKAQQEN
EKRLRLNRANAEKHMREVELQGEEKMRQYEQKMEKDLEEQRCQAAEEKRR
VLEQAEKAMQQRDAAEQARKDLAQQRPSKGWVTDAAAVAGSFFGAMITVA
VVAVAFMP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase