mRNA_A-nodosum_M_contig11159.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig11159.2.1
Unique NamemRNA_A-nodosum_M_contig11159.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig11159.2.1 vs. uniprot
Match: D7FYW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYW7_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 9.220e-13
Identity = 36/52 (69.23%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:    1 RDRLLSVLRRHTEAGRSESIAAHRERLRRRPMTEKEVNRCDLAAAKLELKTL 156
            R+RLL V+RR+ +AGR ES+AAHR+RLR+R M+EKEVNRCDLA+AKL LK +
Sbjct:  145 RERLLGVVRRYKDAGRKESVAAHRDRLRKRHMSEKEVNRCDLASAKLGLKAM 196
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11159.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYW7_ECTSI9.220e-1369.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig11159contigA-nodosum_M_contig11159:11678..12325 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size158
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size156
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866511.1805308-CDS-A-nodosum_M_contig11159:11677..117851680866511.1805308-CDS-A-nodosum_M_contig11159:11677..11785Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11159 11678..11785 +
1680866511.1893833-CDS-A-nodosum_M_contig11159:12275..123231680866511.1893833-CDS-A-nodosum_M_contig11159:12275..12323Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11159 12276..12323 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig11159.2.1prot_A-nodosum_M_contig11159.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig11159 11678..12323 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig11159.2.1

>prot_A-nodosum_M_contig11159.2.1 ID=prot_A-nodosum_M_contig11159.2.1|Name=mRNA_A-nodosum_M_contig11159.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=52bp
RDRLLSVLRRHTEAGRSESIAAHRERLRRRPMTEKEVNRCDLAAAKLELK
TL
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mRNA from alignment at A-nodosum_M_contig11159:11678..12325+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig11159.2.1 ID=mRNA_A-nodosum_M_contig11159.2.1|Name=mRNA_A-nodosum_M_contig11159.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=648bp|location=Sequence derived from alignment at A-nodosum_M_contig11159:11678..12325+ (Ascophyllum nodosum dioecious)
AGGGATCGCCTCCTATCGGTGCTGCGGCGGCACACAGAAGCAGGCCGGTC
AGAGTCCATCGCCGCACATCGGGAGCGCCTTCGCCGGAGACCCATGACGG
AGAAGGAGGTAGCTGAATGGAACATGGAATAGAAAATGCTTGACAAGTCA
AAGCTGTCATGTAAGCCTCAGTGATCCCCTGCCCACTCCTCGAAGGGGAA
AAAAAAACAGTCACGCTCCCCTCCGTGTGGAGCTCCTACCGTCCGCCCAA
ACCGCACTTTTTTTTTGCATCCTCTTTAAGGCTCCGTTGACGTCCTGCCT
GTGGTCCCTAAGGATCCCCTCCCCTCGTCCCTCCCCGGTTCTCGCCTACC
GTTCGTTTTTTTTATCGCGATGCAATTTCAAAACTCTTCCATCTCGACCG
TCAATCGTTGAAGTTTATCCCCCACACTTACCGTTACGGAATACGAGAAA
TCATCATGTCAAGAATCGACCTCACGAATCGGCACTACGTAGAGAAACTG
CGAGGTTTTCCACTAGCCTATTACAGCATACTCCACGAACGCTCGCTGAC
TCGGATCGATGGTCGATTGTCGATGGCTCATTTGTGGTGTGCGGGCAGGT
AAACAGGTGCGATCTGGCCGCGGCGAAGCTGGAGCTGAAGACCCTCAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig11159:11678..12325+

>mRNA_A-nodosum_M_contig11159.2.1 ID=mRNA_A-nodosum_M_contig11159.2.1|Name=mRNA_A-nodosum_M_contig11159.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=156bp|location=Sequence derived from alignment at A-nodosum_M_contig11159:11678..12325+ (Ascophyllum nodosum dioecious)
AGGGATCGCCTCCTATCGGTGCTGCGGCGGCACACAGAAGCAGGCCGGTC
AGAGTCCATCGCCGCACATCGGGAGCGCCTTCGCCGGAGACCCATGACGG
AGAAGGAGGTAAACAGGTGCGATCTGGCCGCGGCGAAGCTGGAGCTGAAG
ACCCTC
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