mRNA_A-nodosum_M_contig1107.11.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1107.11.1
Unique NamemRNA_A-nodosum_M_contig1107.11.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1107.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1107contigA-nodosum_M_contig1107:179421..180069 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size649
Hectar predicted targeting categoryother localisation
Exons1
Cds size474
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866496.8555677-UTR-A-nodosum_M_contig1107:179420..1795951680866496.8555677-UTR-A-nodosum_M_contig1107:179420..179595Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1107 179421..179595 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866496.8650448-CDS-A-nodosum_M_contig1107:179595..1800691680866496.8650448-CDS-A-nodosum_M_contig1107:179595..180069Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1107 179596..180069 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1107.11.1prot_A-nodosum_M_contig1107.11.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1107 179596..180069 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1107.11.1

>prot_A-nodosum_M_contig1107.11.1 ID=prot_A-nodosum_M_contig1107.11.1|Name=mRNA_A-nodosum_M_contig1107.11.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=158bp
MPRNWSEAVPEGSGPVPQQEEFGGDDQPTLADVYRMIEELFDKSGRKLDE
LTENLRVTDQRVASLDQDTWQLRLAMEVDVPADTKPRERTESAAKAVQAI
NGDSFSANRVDPDPMCSTSFGVKAEPPALPYRDDALVENGAAAPKSCLSP
LEMRTITA
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mRNA from alignment at A-nodosum_M_contig1107:179421..180069+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1107.11.1 ID=mRNA_A-nodosum_M_contig1107.11.1|Name=mRNA_A-nodosum_M_contig1107.11.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=649bp|location=Sequence derived from alignment at A-nodosum_M_contig1107:179421..180069+ (Ascophyllum nodosum dioecious)
GTTTTATTTACGAGTACTTTCGTCTCCGGGCGTCAGCTAACGTCCACTGT
GTCTACCCTCATGCTACGCTACTAATAATACGTTCTTCATATAATATCTT
CAAGACTGTCAGCCCTTCCCTCTGGCGAGGGCGTATAAACACATTAGTGA
CCTCGACGTCGAGGGCTACCCCAACATGCCACGGAACTGGAGCGAGGCTG
TCCCTGAGGGCAGTGGTCCCGTCCCCCAGCAAGAAGAATTCGGGGGGGAT
GACCAACCCACGCTGGCGGATGTGTATCGAATGATTGAAGAACTCTTCGA
CAAATCGGGCAGGAAACTGGATGAGCTTACGGAGAATCTGAGAGTGACGG
ATCAGCGCGTAGCAAGCCTTGATCAGGACACTTGGCAGCTGCGTCTTGCG
ATGGAGGTAGACGTGCCAGCAGACACCAAGCCTCGCGAGCGCACGGAGAG
CGCCGCTAAAGCAGTTCAAGCAATAAATGGGGATAGCTTTTCTGCGAACC
GGGTCGATCCCGATCCGATGTGCTCGACCAGTTTCGGCGTGAAAGCCGAA
CCTCCCGCTCTCCCTTACAGAGATGACGCCTTGGTCGAGAACGGCGCTGC
GGCGCCAAAGTCATGTCTCTCGCCGTTGGAGATGCGCACAATAACAGCT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1107:179421..180069+

>mRNA_A-nodosum_M_contig1107.11.1 ID=mRNA_A-nodosum_M_contig1107.11.1|Name=mRNA_A-nodosum_M_contig1107.11.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at A-nodosum_M_contig1107:179421..180069+ (Ascophyllum nodosum dioecious)
ATGCCACGGAACTGGAGCGAGGCTGTCCCTGAGGGCAGTGGTCCCGTCCC
CCAGCAAGAAGAATTCGGGGGGGATGACCAACCCACGCTGGCGGATGTGT
ATCGAATGATTGAAGAACTCTTCGACAAATCGGGCAGGAAACTGGATGAG
CTTACGGAGAATCTGAGAGTGACGGATCAGCGCGTAGCAAGCCTTGATCA
GGACACTTGGCAGCTGCGTCTTGCGATGGAGGTAGACGTGCCAGCAGACA
CCAAGCCTCGCGAGCGCACGGAGAGCGCCGCTAAAGCAGTTCAAGCAATA
AATGGGGATAGCTTTTCTGCGAACCGGGTCGATCCCGATCCGATGTGCTC
GACCAGTTTCGGCGTGAAAGCCGAACCTCCCGCTCTCCCTTACAGAGATG
ACGCCTTGGTCGAGAACGGCGCTGCGGCGCCAAAGTCATGTCTCTCGCCG
TTGGAGATGCGCACAATAACAGCT
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