mRNA_A-nodosum_M_contig11068.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig11068.1.1
Unique NamemRNA_A-nodosum_M_contig11068.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11068.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig11068contigA-nodosum_M_contig11068:4958..11232 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size320
Hectar predicted targeting categoryother localisation
Exons2
Cds size294
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866496.5114167-UTR-A-nodosum_M_contig11068:4957..49831680866496.5114167-UTR-A-nodosum_M_contig11068:4957..4983Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11068 4958..4983 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866496.522704-CDS-A-nodosum_M_contig11068:4983..50441680866496.522704-CDS-A-nodosum_M_contig11068:4983..5044Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11068 4984..5044 +
1680866496.532342-CDS-A-nodosum_M_contig11068:10999..112321680866496.532342-CDS-A-nodosum_M_contig11068:10999..11232Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11068 11000..11232 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig11068.1.1prot_A-nodosum_M_contig11068.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig11068 4984..11232 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig11068.1.1

>prot_A-nodosum_M_contig11068.1.1 ID=prot_A-nodosum_M_contig11068.1.1|Name=mRNA_A-nodosum_M_contig11068.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=98bp
MSELVGMLRQLTTETRTAGDGDGRRGEESGGARRDAAHIYSSGARRGRSL
LRRDTESQQFKMKGREKLQRPGISPSTTGLHQNQPTRDQDFQQEWAR*
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mRNA from alignment at A-nodosum_M_contig11068:4958..11232+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig11068.1.1 ID=mRNA_A-nodosum_M_contig11068.1.1|Name=mRNA_A-nodosum_M_contig11068.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=6275bp|location=Sequence derived from alignment at A-nodosum_M_contig11068:4958..11232+ (Ascophyllum nodosum dioecious)
TCAAGTGTCTCAGAGATCCAGGAGAAATGAGTGAGCTGGTCGGCATGTTG
CGGCAGCTTACTACGGAGACCAGAACAGCGGGTGACGGTCGACGTGGAGA
GGAATCAGGCGGCGCCAGAGGGACGCCGCCCACATCTACAACAGCGGTGC
AAGAAGAGGCGCTTACTGCTGCGACGGGATACCGAGTCACAGCAGTGCAG
GATGAAGGGACGGAGAAGCTACAGCAGCAAGGAATTTCCCCGTCCACCAC
AGGGCTGCATCAGAACCAGCCGACACGAGACCAGGACTTCCAACAGGAGT
GGGCCCGATGATCGACGTCCGGCGCGGTGAAGCTAGAGATCCATATCTCG
CAGGTATAACCGCATACGATGAGAGTAGAGACGTTCTCCGTACAGACTTC
AAAAGCCTGCCTGCCCGTGTCGTACCTCCTGTACTAAAAGCAGAAAAGGG
GGCTTTCAAAAATTCAAGCACGATTTTTTTCTCAAGGCGAATATGTTGGA
TATAACAGCCCATTTCGTAGACCAAGGATGCGAGCGGTCCCAGTAGGGGA
CCCGCTGAAACAAAAGGCAGTGTTGTTGCAAGAAGGTTTTTCGAACGACG
AGATCAGAACGGCATACCAGGCGTGGAATTTTATAGATGCAGCTCTTCAG
AGTGAGTCGGATCGATCCATACTTAAAAGATGTAAATCGCCGAGGGAGGT
TTTTTGAACGTCTCGAAAAATGGCACGACCCCGACAGCGAGGTAGCAACG
CAACGATTGTACGACAAGTTTCACGAGTTTACGATCCCACCCACAGCGAC
CCCATCGCCGCACTTCATGACCTTGAGGACATAAATAACGAGATGCGCTG
AGAAGGGGATCGGACGGATCCCTGAAGCAGTGCTGCATGCACGTTTCGTT
CGCGCGCTGCCCGACGAGTATTCCCTCGTCAAAGAAACGCTACAGGCGAT
GAAAAAATCGAGATCGGGACGAGATCATCCGGATGGTCAGCACTCGCCAC
TCCAACCTGCCTCGAAAGAATGGGGCACAGCGATCTTCCAGGCAGCCCGA
GCAAGCATTCGCCTCCAACGAAAGCGGCAACCGCAGCGGTGCGCGACGAG
GTCGCGACCGCAGGAACGGGGGCGGACAGGGCCGCGGCCGCGGTGAAACA
GCCACGGCGGAGTAGGCAACAACAACAGCTCCGGAACTCCCCAGCGGCAG
TACAAGTAGTCCAGTTGAGACCCAGGGGAGCAGCGATGGTGCAGGCAGCC
TTGGCGGCGGCGGTGACGGTCGCCACCACATCCCCTCTGGCCGTTGTTTC
CGCTGCAGACAGAGAGGCCACAGGAGGCAAGACTGCACGACGAGGGAGAG
CGACTTCGTACCCAGATGTAACAGGTGCACAGGTTACGGTCATGAGAGAG
TTCCTGCCCATCGGACGCGGCAATACTTGTGGTGGAGCTGCCGGTACCTG
AAGAAGACCTCGCCGTGGAAGCCGAGGCGTTCGCGGTTTTCGGAGGCAGC
AAGTGCAGTGTGACGATTGGCGATGCAGTGGGGGTGGCGTTGGACAAGCA
GGTCGTGCAGTACATCGCTGATAGCGCGGCAACATGCAATATGACGCCGG
ACGCCGACGGTCTAACCAACTACCGAGAGTGTAGCAGACCTCTCCGGTCT
TGCAAACGGGGAGGAAATTTCTATCGTAGGGTATGGTGACCTTACGGTAA
ATTTCCGCACCGACCACAGATGGGTACGCGTTAAAATGAACGACGTAGCC
CATGTTCCCCAGTTGAGCCACAATCTCATCTCGCTCCCGTCAATGACACT
GAAAGGTCACACATACATGGGTGACAAAGGTGGAGTAACTCTCAAGCTCA
AAGGGGAGAAACCGTATTTTTCCCCCTGGTCGGTAAGCTTTGCCGTCGGT
ACGGGTTCCGCCCGGAGGCGGCAGGTAGTATGGTAGACAGTGCTTGTACC
ACAATCGCGCCGGGGAAGACGAAAACCCCCACCACCCCCACCGATATCAA
CATCCTGCACTGCACGTCCGGCCACACTCACGAGGTACTGCTCAAGAAGG
AGCAGCAGGAGTCAACCCCAGCGGGGAACTTCACGAGTGCCGGGGATATT
CGATGGCAAGGGGCTGCGGAAGTCCATCGCGAGGTCGACGCACACTGGAG
CAGATACCCTCCGTCTCTCCGCGCTCGGCAGCTGCCCCCTATTGTCAAAG
AGGGGAGTCTGCAGCGGGGGAGGGCGCGAGCGGGGAGGGGGCGTCAAATC
AAGGCGGAAGGAGGGCGCAAGGCGTGGACAGCGAGTTCAGCCTCGGCAAC
GCAGCGGAGGTGTGGCCCCGGTGTTACCCGCAACGCGCGAGGCGCTAGCG
GCAGAATTAGAGCCGGGGCAGCGGGGTGCGGAAGGCAACCCCCAACACCA
TCGGCCTCCCCGGGAGGAGGCGCCAGCGGCAGAATCAGGAGCCGGGGCAG
CGGGGGTGCGGAAGACGACACCCCGACACCATCGGCCTCCCCAGGAGGGG
AGGCGCCAGCGGCAGAATCAGGAGCCGGGGCGGCGGGGGTGCGGAAGGCA
ACCCCCAACACCATCGGCCTCCCCGGGAGGGGAGGCGCCAGCGGCAGAAT
TCAGAGCCGGGGCAGCGGGGCGCGGAAGGCGACACCCCGACACCATCGGC
CCCCTCAGGAGGAGGCGCCAGCGGCAGAATTTGCAACCGCGGCCACGGGG
TGCGGACGGCAACCCCTCGACACCAGCGGTTTCCCCCGGAGGGGAGGGGC
GCCAGCGGCAGGGTTGCAGCCGCGGCCACGGGGGTGCGGATGGCAACCCC
TCGACACCAGCGGTTTCCCCCGGAGGAGGCGCCAGCGGCAAATTTTGCAG
CCGCGGCCACGGGGGCGGATGGCAACCCTCGACACCAGCGGTTTCCCCGG
AGAGGAGGCGCCAGCGGCAAAATATGTAGCCGCGGCCACGGGGTGCGGAA
GGTAACCCCCGACACCATCGGTCCCCCCGAGGGGGCCGATTTCGGTGGCA
TCAACGGCAACAGCAGCAGCTACAGCAGCGAGGACAGCCGTACCAGCAGC
GACAGCAGCAGCGGCAACGACGGTGGAGACTTTCCCACCCACGCGAGGAG
ACCTGCGCGGGACCTGGAGGCCTTCGGCGAGCCCCCGTACTACAGAGCGG
CCACACGAGGTCTCAGTCGCGAAAATGGGCTCGGCCATGGGAGCGTCCTG
CGCGGACGACCAGTTGGCGTACGCCGCTTCCGAGGGCCATGGAAGCCGAG
AAGCCCACGGAGGAGAAGGCCGCGGAGGTCGAACGAGCCTCGACTCCCTG
CTGGAAGAGCAACTGGAGAAGGAACGTGAGTGGCTCGAGAAACTCGAGGG
GCGTGGTATCGGGCCCTGGGGCTCGGGAGATGTACGCGGATGCCGAGTAG
GCCGACAAGGAAAATGATAGGCGTTCGATGTCCGCGATAGCAGTAATTTT
TGGAATGTACTGTTGTAAGCCACGCGAAAAAGAGTACATTACGGCTGGGG
ACTGGGCAAAAAGGAATATCTGCCTGCGCATGCCGTTCTGTTTTTATTGT
GCCCGAGACTAGCAAGTATTAAGGTCCTCGAGGACAACGAGGGGAGCTAA
TGCGCTGATTAACAACGCCCCTGAGCTCAGTTAGGAGCAAGCACATCGAC
ACGCGTGATCTATTCAGGAAACGAAAAATCAGCGTAGAGTATGTAGCGTC
GGCGGAGTAGCACGATGACATATTCACCAGGGCCCTCAGTAGGGCAAATT
TCAGGTACCACCGGAAGCATTTGATGAACTTGCGGAATGAGGTACTATAG
CGCTGGGCCAGAGAGTTCAAGCAGCCAGTGTACTAACACGTCACCCGAAG
CAGGTAGGCCTAGGACTAGCTAGTGGCGGGAGTTGTCTCTGACAATGGCC
CGTGCACCACGATGCGGTCCTCGGATGGCAAGTAAGCTTAGGGTGTGTAA
CTCGCGTGGACGACACTCGGCTCGCTTTGACCTCCTTGCTTTGGAAGCGC
GACCGTTGGAATCCTGTGTGATAGCAGCGGTTATTTCACTTTTGGACGCG
CGGGGTTTTTGATCGGCAGGGCCGGTTTCCCCACGCACCGTTTCTGCGTC
TTTAGGTACGACCTTGGGATAGCTACATCCCCTTTTGATGGTTAGTCACT
TGCGTGAATAACCAGGGAGGGTAATCGTACAGGCATATAGGGTACGTAGG
TCGACTAGCAGATACGGGTTATCGCATCGGGACCAATCACGTAGAGACGT
GTGGATGGGCGTAATTACGCCGCACTTTAGAGATAGGTGCATTACCCCGA
GTTGGATGAACGCTCTTGGTCACTTCCTCTCCATCCCCTCTCTCTCGTCT
CTACCTGAGCGTCCTGACAATAAAATTATTAAAAAGAAGACTCAGCGCTA
CACTGCGGAAGGCAGCGATCGCCTCAAACCCTAGAAACACGAATACAGTC
TGTTGACAGTCGCGGTTTATGGGGAGACTTGACTGTCGGCTTGCCGAGCG
CCCTAGGTAGCGGAGCTCGGAGGAGGGCGCAAGGTCGAACTTTAGATCGA
ACCTCGTTACGCTGTCCGCCCTCTGCCGCCCTCACCAGTGTGTAGGTGTT
GGAAATGACTCGGAGGCCTGACTATCTAATGACACCGTATTTTCTAAATG
GTCGTTAGGACCCAAAACAGGATCTGTCGACGGAATCTGTCAACAAACAG
ATTCTATGAACAGATTCTATCTCGACGTTAAGACAGGGCCTTAGGGCGGT
CCTGGGAACAAAATCTTGTACAAAAATCTTAATTTTTTCGGCGAAAATCT
TGCCGTCGAAGATTTCGTAACGCTCTTTATGGGGAAAAAATCTCGTTGAT
GAAATGTTTTTAAAAGAAACATCAGAGCACACCTAGACCTTCTGAGCATC
CCCGGTTTTGTTTGGCCATGGTTTCGACAAACAACTTTTATATGCTCTTC
TATGCGGGGGAAATACTAAATTCAAAGTGCCGAAGGTTGGAAATGGCAAC
GTATTTTTTCCTAACATGAGGGTGAGACTTGCAAGAGCAGACAAAGCTGT
GTAGCTCTACAGTAGTAGTACAACCACCAGTGGAGCACAGACACCAACGC
ATCTACAGTCTTTACCCTCCTAGGAGTCATTGTCAGTACATGAAAACAAG
CGCAGCCCGGCAAGAATCCGCTACTCTATTTAGTCATTTTTGTACACTAC
CTACAGAACTACAGGCAAACGCCATCGATGTTTAAAGGAAAAATCAGAAC
ACACCTAGACCTGCTGAGCATCCCCCGGTTATGGGGGGAAACATGTCAGA
ACGTTTAGGTGGGATTAATAGGCTGCAAATACAAAACCTCTTCATGGCAT
TTAAACAGGTTCCTCGATGCAGATAACATTGGGTCCACAGTATAATGTCG
GGAGAAACCCACCGTTATATTGTACATTTACATTAATCGCCATGCAGGGA
CACCAGAAAAACACTAGAAGCAAACCAGAGACAATGTAGTACACCATCAC
ACATGGTAGTAGTAATATACATTACAAAGGCTATAAGTACATGTTCGTAC
AGGGTAATGGATGTACGTAGGTCATATTTGCGGATCCGGCTCAACGCACA
TGGACCAATCGTAAGGGCACGTGGAGAGGTGTAGCGTACAGATAAGCTGA
GGTACGTAGGTCTGGTTCAACCCATCTTGGACCAATCACATAAGGGCATG
TGGAGTGGCGTGGTTATGCCACATTATTCTGAGCAGGTCAGGGCTGGTGC
CACCTCTCACTTCCTCTCCACCCCTTCTCGTCTCTACCTGAGCGTCCTGT
GTAATAAAATTATTAAAAGAAGACTCAGCGCTACACTGCGGAAGGCAGCG
ATCGCCTCAAACCCTAGAAACACGAATACACTAGTGCATCCTTCGGTAAG
GAGTTTCAGGTTTCGAGAATGAGTGAACACAGTGCTTCGCCAAGACTAGA
GGCTTTGGAGTCAAGTGTCTCAGAGATCCAGGAGAGAATGAGTGAGCTGG
TCGGCATGTTGCGGCAGCTTACTACGGAGACCAGAACAGCAGGTGACGGT
CGACGTGGAGAGGAGTCAGGCGGCGCCAGAAGGGACGCCGCCCACATCTA
CAGCAGCGGTGCAAGAAGAGGCCGCTCACTGCTGCGACGGGACACCGAGT
CACAGCAGTTCAAGATGAAGGGACGGGAGAAGCTACAGCGGCCAGGAATT
TCCCCGTCCACCACAGGGCTGCATCAGAACCAGCCGACACGAGACCAGGA
CTTCCAACAGGAGTGGGCCCGATGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig11068:4958..11232+

>mRNA_A-nodosum_M_contig11068.1.1 ID=mRNA_A-nodosum_M_contig11068.1.1|Name=mRNA_A-nodosum_M_contig11068.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at A-nodosum_M_contig11068:4958..11232+ (Ascophyllum nodosum dioecious)
ATGAGTGAGCTGGTCGGCATGTTGCGGCAGCTTACTACGGAGACCAGAAC
AGCGGGTGACGGTGACGGTCGACGTGGAGAGGAGTCAGGCGGCGCCAGAA
GGGACGCCGCCCACATCTACAGCAGCGGTGCAAGAAGAGGCCGCTCACTG
CTGCGACGGGACACCGAGTCACAGCAGTTCAAGATGAAGGGACGGGAGAA
GCTACAGCGGCCAGGAATTTCCCCGTCCACCACAGGGCTGCATCAGAACC
AGCCGACACGAGACCAGGACTTCCAACAGGAGTGGGCCCGATGA
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