prot_A-nodosum_M_contig1106.2.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1106.2.1
Unique Nameprot_A-nodosum_M_contig1106.2.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length548
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1106.2.1 vs. uniprot
Match: D8LQY7_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQY7_ECTSI)

HSP 1 Score: 239 bits (609), Expect = 1.620e-64
Identity = 119/184 (64.67%), Postives = 139/184 (75.54%), Query Frame = 0 
Query:  311 SSVRGAWRWYDRPNVAKLLNDIADAMFAHGYRDQAADLFERSVEIYYAYEGPNGHGGLAEALNDLGYALWEACASPAFSGQE-GEKLACTLVANAEEVFRLAYEECGENPGYGHPFAAVCLSNLADCVSARCAYKNAAELLKRALRVRLMSLGSKHLDTADTLRRLGGIQHQQGYLDDAEGCYV 493
            S +R AW W DRP VAK+LND+AD+M A G+ DQAADLFER VEIY  Y GP GHG +AEALNDLGY LW+ACA+P F GQ+  E +ACTL+ANAEEVFRLA  ECG  PG  HPFAA CLSNLADC SAR A++ A  L + AL VR   LG K LDTADTLR+LGG+ H+QG L++A   Y+
Sbjct:  395 SELRKAWMWNDRPGVAKMLNDVADSMAAAGFHDQAADLFERCVEIYLVYTGPEGHGEIAEALNDLGYVLWDACANPVFIGQDVAEDMACTLMANAEEVFRLALFECGSCPGGDHPFAATCLSNLADCASARLAHEEATLLCQWALHVREECLGPKDLDTADTLRKLGGLLHRQGLLEEARVNYL 578
[Close]
BLAST of mRNA_A-nodosum_M_contig1106.2.1 vs. uniprot
Match: A0A6H5LDX5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDX5_9PHAE)

HSP 1 Score: 216 bits (551), Expect = 7.370e-57
Identity = 123/257 (47.86%), Postives = 143/257 (55.64%), Query Frame = 0 
Query:  305 VTATATSSVRGAWRWYDRPNVAKLLNDIADAMFAHGYRDQAADLFERSVEIYYAYEGPNGHGGLAEALNDLGYALWEACASPAFSGQE-GEKLACTLVANAEEVFRLAYEECGENPGYGHPFAAVCLSNLADCV-------------------------------------------------------------------SARCAYKNAAELLKRALRVRLMSLGSKHLDTADTLRRLGGIQHQQGYLDDAEGCYV 493
            V A   S +R AW W DRP VAK+LND+AD+M A G+ DQAADLFER VEIY AY GP GHG +AEALNDLGY LW+ACA+P F GQ+  E +ACTL+ANAEEVFRLA  ECG  PG  HPFAA CLSNLADC                                                                    SAR A++ A  L + AL VR   LG KHLDTADTLR+LGG+ H+QG L++A   Y+
Sbjct:  664 VVAAEPSELRKAWMWNDRPGVAKMLNDVADSMAAAGFHDQAADLFERCVEIYLAYTGPEGHGEIAEALNDLGYVLWDACANPVFIGQDVAEDMACTLMANAEEVFRLALFECGSCPGGDHPFAATCLSNLADCARLTWLTRHAALPPXXXXXXXXXRRAECLWSEEFFEISVVCAKYCSPPSPSPSPPCLLQPETTHSKIQSARLAHEEATLLCQWALHVREECLGPKHLDTADTLRKLGGLLHRQGLLEEARVNYL 920
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1106.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQY7_ECTSI1.620e-6464.67TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5LDX5_9PHAE7.370e-5747.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 511..544
e-value: 9.5
score: 15.2
coord: 469..502
e-value: 19.0
score: 12.4
coord: 326..359
e-value: 470.0
score: 0.3
coord: 427..460
e-value: 77.0
score: 7.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 315..384
e-value: 4.5E-6
score: 28.0
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 396..547
e-value: 1.2E-34
score: 121.7
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 323..541
NoneNo IPR availablePFAMPF13424TPR_12coord: 467..542
e-value: 7.6E-14
score: 51.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..48
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..55
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 164..244
NoneNo IPR availablePANTHERPTHR45783KINESIN LIGHT CHAINcoord: 403..541
NoneNo IPR availablePANTHERPTHR45783:SF3KINESIN LIGHT CHAINcoord: 403..541

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1106contigA-nodosum_M_contig1106:64686..76228 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1106.2.1mRNA_A-nodosum_M_contig1106.2.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1106 64682..76228 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1106.2.1 ID=prot_A-nodosum_M_contig1106.2.1|Name=mRNA_A-nodosum_M_contig1106.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=548bp
MSGSFCSSTGDGGGGGRGFVVGSDCGLSPVEHDSCRGRRRKGDDDDVAGG
ETVVVGDRGEGVAAASASRRGKGGFTADPVSFLSSPSSSMPSLVEMARSS
GGCRDSAIAFSSSPLLSGKFGGAGSGGKGSVAPLSSSSSFHVDVPRGGGA
SGAMLRPSLQVRGTVPGGGGLETGEGKSGGKLLHATAAPAAATRTSATRN
DRAGGERAGASRNVVPSPPALNDPRSRPVAEVARAAPKPRDGPGRRCRTG
KTMHDGARGGWVDDDVKVEVDVGVDASPKSKGAGSGRKLDGATAFSSAQR
RNGGVTATATSSVRGAWRWYDRPNVAKLLNDIADAMFAHGYRDQAADLFE
RSVEIYYAYEGPNGHGGLAEALNDLGYALWEACASPAFSGQEGEKLACTL
VANAEEVFRLAYEECGENPGYGHPFAAVCLSNLADCVSARCAYKNAAELL
KRALRVRLMSLGSKHLDTADTLRRLGGIQHQQGYLDDAEGCYVRALRIFV
DVLGPDHENVGSALNLLAVVVGEQGRYLEAENFHRRALSQRRNAGARG
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf