mRNA_A-nodosum_M_contig110.10.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig110.10.1
Unique NamemRNA_A-nodosum_M_contig110.10.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig110.10.1 vs. uniprot
Match: D7FP37_ECTSI (DOMON domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP37_ECTSI)

HSP 1 Score: 385 bits (989), Expect = 3.820e-130
Identity = 198/346 (57.23%), Postives = 253/346 (73.12%), Query Frame = 1
Query:   16 ADDEFDASSYARNASLGTDLDLFWTIDTDLQTIRVAVHAKAASGWAGFGVSEMGGMEGADIVYYEAAAGSITDAHAIVAGTPVTDVCTQDWTLLSAEKGTGGLVFEAERALETGDSQDRAFTDDSAEGASPTTLIAAWGNTESISYHENNFAQGQVIMFGGVENSNS-DPLLGISSSPSVSFFDITAKNFTIPTGRTWYEDTYLLASELPTLDEYHVIGFEAIVQNTTSKYVHHLVLTACTGADDCGQACVEW------------FSSNGLYSSSLSNTSSTSTRSRSSAASYVSTEY---GYEIPSFCDY--ESTSIFVWAPGVANEQLPEDVGFKFGPATGGYT 999
            A D+F+ SSYARN SL T++D+FWTID + +TIRVAVHAKAASGWAG G+SEMGGMEGADIVYYE A G++TDAH++VAG PV D CTQDWTLLSA+  +GGLVFEAERAL+TGD+QDR F DDS +GA  T L+AAWG++ES+ YH+ NFA+G+V+MFGG E++++ +PL+ + +S   S+FD+  KNFTIPT RTWYE+T + ASELP LDEYH IGFE I+Q  T+++VHHLVLT   G  DCG AC EW            + S  L SS+  + S TS  S S ++SY++T +      +P FC    ++  IF W PG  N +LP+DVGF FG  +GG T
Sbjct:   33 ATDDFNGSSYARNVSLDTNVDIFWTIDLEAETIRVAVHAKAASGWAGVGISEMGGMEGADIVYYEIATGNVTDAHSLVAGAPVVDECTQDWTLLSADASSGGLVFEAERALDTGDAQDRVFEDDSLDGALATRLLAAWGDSESLGYHDVNFAKGEVVMFGGSESADAAEPLVEVKASEDFSYFDVAPKNFTIPTERTWYEETCIKASELPNLDEYHAIGFEGILQEDTAEFVHHLVLTGWYGPPDCGDACFEWLDEIFGGDGSDSYDSEDLSSSNPLDLSGTSGSSSSYSSSYITTYFERNNITLPWFCYNLDDTADIFTWTPGPRNLELPDDVGFLFGNESGGST 378          
BLAST of mRNA_A-nodosum_M_contig110.10.1 vs. uniprot
Match: D8LD47_ECTSI (DOMON domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD47_ECTSI)

HSP 1 Score: 388 bits (997), Expect = 4.170e-128
Identity = 195/321 (60.75%), Postives = 241/321 (75.08%), Query Frame = 1
Query:   16 ADDEFDASSYARNASLGTDLDLFWTIDTDLQTIRVAVHAKAASGWAGFGVSEMGGMEGADIVYYEAAAGSITDAHAIVAGTPVTDVCTQDWTLLSAEKGTGGLVFEAERALETGDSQDRAFTDDSAEGASPTTLIAAWGNTESISYHENNFAQGQVIMFGGVENSNSDPLLGISSSPSVSFFDITAKNFTIPTGRTWYEDTYLLASELPTLDEYHVIGFEAIVQNTTSKYVHHLVLTACTGADDCGQACVEWFSSNGLYSSSLSNTSSTSTRSRSSAASYVSTEYGYEIPSFCDYESTSIFVWAPGVANEQLPEDVGFKFG 978
            A  +FDASSYARN S+  ++D+FWT+D +L TI+VAVHAKAA+GWAG GVSEMGGMEGADIVYYE   G++TDAHAIVAGTPVTD CTQDWTL+SAE GT GLVFEAERAL+TGDSQD  F DDSA+   PT L+AAWG++E+I+YH  NFA+ +VI++GGVENSN+DP+L +++ P + FFD+TAKNFT+PT RT YE++ +  SELP  +E+H IGFE I+Q +TSKYVHHL LTA TG  DCGQ C++W          L+N       S  SA S   T     IP FC  +  +IF WAPG A+ QLP +VGF+FG
Sbjct:   32 AQQDFDASSYARNISVDPNVDVFWTVDANLGTIKVAVHAKAATGWAGLGVSEMGGMEGADIVYYETWTGNVTDAHAIVAGTPVTDECTQDWTLVSAEAGTDGLVFEAERALDTGDSQDHVFVDDSADDVLPTRLLAAWGDSETIAYHAANFAKAEVILYGGVENSNTDPILELTTDPDIPFFDVTAKNFTVPTNRTHYENSCIPRSELPA-EEFHAIGFEGIIQTSTSKYVHHLTLTAFTGTHDCGQDCIDWV---------LANLPDDDEPSSQSAYSDPYTFNNMTIPDFCYQQFANIFAWAPGSADVQLPGNVGFRFG 342          
BLAST of mRNA_A-nodosum_M_contig110.10.1 vs. uniprot
Match: D7G216_ECTSI (DOMON domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G216_ECTSI)

HSP 1 Score: 377 bits (968), Expect = 1.480e-123
Identity = 194/348 (55.75%), Postives = 248/348 (71.26%), Query Frame = 1
Query:   22 DEFDASSYARNASLGTDLDLFWTIDTDLQTIRVAVHAKAASGWAGFGVSEMGGMEGADIVYYEAAAGSITDAHAIVAGTPVTDVCTQDWTLLSAEKGTGGLVFEAERALETGDSQDRAFTDDSAEGASPTTLIAAWGNTESISYHENNFAQGQVIMFGGVENSNS-DPLLGISSSPSVSFFDITAKNFTIPTGRTWYEDTYLLASELPTLDEYHVIGFEAIVQNTTSKYVHHLVLTACTGADDCGQACVEWFSSNGLYSSSLSNTSSTSTRS--------RSSAASYVS--------TEY----GYEIPSFCDY--ESTSIFVWAPGVANEQLPEDVGFKFGPATGGY 996
            D+FD SSYARN SL T++D+FWT+D + +TIRVAVHAKAA+GWAG G+SEMGGMEGADIV+YE A G++TDA+++VAGTPV D CTQDWTLLSAE G G LVFEAERAL+TGD QDR F+DDS +GA PT ++ AWG+++++ YH  NFA+GQV+MFGG EN ++ DP++ + +S  V FFD   KNF+IPT RTWYE+T + ASELP LDEYH I FE ++Q  T++YVHHL+LT   GA DCG+AC EW     +++S   + SS++             S +SY S        TEY       +PSFC    E   IFVWAPG +N +LP DVGF  G  +GG+
Sbjct:   23 DDFDGSSYARNVSLDTNVDIFWTVDLEAETIRVAVHAKAATGWAGVGISEMGGMEGADIVFYETATGNLTDAYSLVAGTPVVDECTQDWTLLSAEVGDGSLVFEAERALDTGDDQDRVFSDDSFDGAIPTRVLTAWGDSDTVGYHGENFAKGQVVMFGGSENDDAADPVIDVKTSEDVQFFDAAPKNFSIPTVRTWYENTCITASELPDLDEYHAIAFEGLLQADTAEYVHHLILTGFYGASDCGKACSEWLDE--MFASEDGSDSSSTVEGGXXXXXXXXXSGSSYPSDDSSSVSFTEYFENLNITVPSFCSNYGEQADIFVWAPGTSNLELPGDVGFLLGNESGGF 368          
BLAST of mRNA_A-nodosum_M_contig110.10.1 vs. uniprot
Match: D7FP38_ECTSI (DOMON domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP38_ECTSI)

HSP 1 Score: 353 bits (905), Expect = 1.650e-114
Identity = 188/333 (56.46%), Postives = 237/333 (71.17%), Query Frame = 1
Query:   16 ADDEFDASSYARNASLGTDLDLFWTIDTDLQTIRVAVHAKAASGWAGFGVSEMGGMEGADIVYYEAAAGSITDAHAIVAGTPVTDVCTQDWTLLSAEKGTGGLVFEAERALETGDSQDRAFTDDSAEGASPTTLIAAWGNTESISYHENNFAQGQVIMFGGVENSNS-DPLLGISSSPSVSFFDITAKNFTIPTGRTWYEDTYLLASELPTLDEYHVIGFEAIVQNTTSKYVHHLVLTACTGADDCGQACVEW----FSSNGLYSSSLSNTSSTSTRSRSSAASYVSTEYGYEIPSFCD--YESTSIFVWAPGVANEQLPEDVGFKFGPATGG 993
            A D+FD SSYARN SL T +D+FWTID +  TIR+AVHAKAA+GWAG G+SEMGGMEGADIVYYE A G++TDAH++VAGTPV D CTQDWTLLSA+  +G LVFEAERAL+TGD+QDR F DDS  GA  T L+AAWG++E + YH+ N A+G+V+MFGG EN+++ +PL+       V+FFD T+KNF+IPT RTWYE+T + ASELP LDEYH IGFE ++Q+ T+++VHHLVLT   G  DCG AC EW    F   G   SS   T+ T                   +P FC+   ++  IF+WAPG+ +  LP+DVGF FG  +GG
Sbjct:   33 AADDFDGSSYARNVSLDTTVDIFWTIDLEADTIRLAVHAKAATGWAGVGISEMGGMEGADIVYYETATGNVTDAHSLVAGTPVVDECTQDWTLLSADVSSGSLVFEAERALDTGDAQDRVFEDDSL-GA--TRLLAAWGDSEFMGYHDGNLAKGEVVMFGGSENADAAEPLV-------VNFFDATSKNFSIPTVRTWYENTCIPASELPKLDEYHAIGFEGVLQDDTAEFVHHLVLTGFYGPPDCGNACFEWMDEMFGDGGSSYSSSDMTNIT-------------------LPWFCNDLEDAADIFIWAPGMQSLDLPDDVGFLFGNESGG 336          
BLAST of mRNA_A-nodosum_M_contig110.10.1 vs. uniprot
Match: D7G337_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G337_ECTSI)

HSP 1 Score: 315 bits (807), Expect = 1.270e-99
Identity = 173/353 (49.01%), Postives = 221/353 (62.61%), Query Frame = 1
Query:   16 ADDEFDASSYARNASLGTDLDLFWTIDTDLQTIRVAVHAKAASGWAGFGVSEMGGMEGADIVYYEAAAGSITDAHAIVAGTPVTDVCTQDWTLLSAEKGTGGLVFEAERALETGDSQDRAFTDDSAEGASPTTLIAAWGNTESISYHENNFAQGQVIMFGGVENSNS-DPLLGISSSPSVSFFDITAKNFTIPTGRTWYEDTYLLASELPTLDEYHVIGFEAIVQNTTSKYVHHLVLTACTGADDCGQACVEWFSS-------------------NGLYSSSLSNTSSTSTRSRSSAASYVSTEY----GYEIPSFCDY--ESTSIFVWAPGVANEQLPEDVGFKFGPATGGY 996
            A D FD SSYARN SL T++D+FWT+D + ++IRVAVHAKAA+GWAG G+SEMGGMEGADI             H ++  +         WTLLSAE G G LVFEAERAL+TGD QDR F+DDS +G  PT ++ AWG+++++ YH+ NFA+GQV+MFGG EN ++ DP++ + +S  V FFD   KNF+IPT RTWYEDT + ASELP LDEYHVI FE ++Q  T++YVHHLVLT   GA DCG AC EW                                   +     SS+ S+  TEY       +P+FC    E   IF+WAPG +N +LP+DVGF FG  +GG+
Sbjct:   21 AADGFDGSSYARNVSLDTNVDIFWTVDLEAESIRVAVHAKAATGWAGVGISEMGGMEGADI-------------HCVLRDSY--------WTLLSAEVGNGSLVFEAERALDTGDDQDRVFSDDSLDGTQPTRVLVAWGDSDTVGYHDENFAKGQVVMFGGSENDDAADPVVDVKTSEDVQFFDAAPKNFSIPTVRTWYEDTCITASELPDLDEYHVIAFEGLLQADTAEYVHHLVLTGFYGASDCGHACNEWLDEIFGGDXXXXXXXXXXXXXXXXXXXXXXXXXXXSYPSDDSSSVSF--TEYFENLNITVPTFCSNYGEQADIFLWAPGTSNLELPDDVGFLFGNESGGF 350          
BLAST of mRNA_A-nodosum_M_contig110.10.1 vs. uniprot
Match: A0A6U4MP62_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4MP62_HEMAN)

HSP 1 Score: 150 bits (380), Expect = 1.050e-37
Identity = 82/231 (35.50%), Postives = 134/231 (58.01%), Query Frame = 1
Query:  106 QTIRVAVHAKAASGWAGFGVSEMGGMEGADIVYYEAAAGSITDAHAIVAGTPVTDVCTQDWTLLSAEKGTGGLVFEAERALETGDSQDRAFTDDSAEGASPTTLIAAWGNTESISYHENNFAQGQVIMF----GGVENSNSDPLLGISSSPSVSFFDITAKNFTIPTGRT--WYEDTYLLASELPT---LDEYHVIGFEAIVQNTTSKYVHHLVLTACTGADDCGQACVEW 771
            + I + + AKA +GW GFG++E+GGM+G+DIVYYEA +  +TD++A+  G P  D C+QDW L SAE   G +  E  R L   D++DR F DD+A   +PT +I AWG+ +++SYH  + A+ QV  F    GG   S  + +  + +  ++   ++   +  IP  R+  ++E+ Y+L   +P      E+H++GFE  +   T K++HH V++A    ++     V W
Sbjct:   50 EEIMLCLQAKA-TGWVGFGLAEVGGMKGSDIVYYEAKSNKLTDSYAVENGMPRADACSQDWKLRSAENVDGTMTVEMSRLLVVTDTEDRNFEDDAALPMAPTAVIMAWGDDDNLSYHAQSRAKAQVRFFQQGAGGGGVSMQERIDALKADSTIQKVEMLQSDHPIPDDRSTQYHEECYILKDIMPAGSEAGEFHIVGFEPFLDPRTKKHIHHYVVSAGNDCENSEGMTVVW 279          
BLAST of mRNA_A-nodosum_M_contig110.10.1 vs. uniprot
Match: A0A7S0ASV8_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ASV8_9STRA)

HSP 1 Score: 150 bits (379), Expect = 2.690e-37
Identity = 93/240 (38.75%), Postives = 137/240 (57.08%), Query Frame = 1
Query:   25 EFDASSYARNASLGTDLDLFWTIDTDLQTIRVAVHAKAASGWAGFGVSEMGGMEGADIVYYEAAAGSITDAHAIVAGTPVTDVCTQDWTLLSAEKGTGGLVFEAERALETGDSQDRAFTDDSAEGASPTTLIAAWGNTESISYHENNFAQGQVIMFGGVENSNS--DPLLGISSSPSVSFFDITAKNFTIPTGRTWYEDTYLLASELPTLD-----EYHVIGFEAIVQNTTSKYVHHLVL 723
            +FD S+Y      G  + + WTID+D   IR+AV A+A +GW GFG++E GGM+G+DIV YEAA  +ITDA+A+    P TD  +QDWTLL ++   G ++FEAER L+TGD  DRA   D      P  +IAAWG+T ++SYH +N A+  +  +   + S +  D      +  +  + D+   N  I    T Y D      +L  L        H+IGFE ++ +  +K++HHLV+
Sbjct:   45 KFDHSAYLAGTIEGEGVAVHWTIDSDASKIRLAVAAQA-TGWVGFGLAEAGGMKGSDIVLYEAATATITDAYAVEYVAPKTDD-SQDWTLLHSQVEDGFIIFEAERLLDTGDPMDRAIGFDGEFVIPPHRVIAAWGDTPTVSYHGDNRARSALRFYPAHDKSGTEEDVFADEMAQEAEGYIDLIMPNHPISLDETEYVDLCFSHEDLINLGMPADVPLHIIGFEPLIDS--AKHLHHLVM 280          
BLAST of mRNA_A-nodosum_M_contig110.10.1 vs. uniprot
Match: D7G217_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G217_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 9.040e-36
Identity = 86/198 (43.43%), Postives = 109/198 (55.05%), Query Frame = 1
Query:  487 MFGGVENSNS-DPLLGISSSPSVSFFDITAKNFTIPTGRTWYEDTYLLASELPTLDEYHVIGFEAIVQNTTSKYVHHLVLTACTGADDCGQACVEWFSS---------------------NGLYSSSLSNTSSTSTRSRSSAASYVSTEY----GYEIPSFCDY--ESTSIFVWAPGVANEQLPEDVGFKFGPATGGY 996
            MFGG EN ++ DP++ + +S  V FFD   KNF+IPT RTWYEDT + ASELP LDEYHVI FE ++Q  T++YVHHLVLT   GA DCG AC EW                                     +     SS+ S+  TEY       +PSFC    +   IF+WAPG +N +LP+DVGF FG  +GG+
Sbjct:    1 MFGGSENDDAADPVVDVKTSEDVQFFDAAPKNFSIPTVRTWYEDTCITASELPDLDEYHVIAFEGLLQADTAEYVHHLVLTGFYGASDCGNACNEWLDEMFGGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYPSDDSSSVSF--TEYFENLNITVPSFCSNYGDFADIFLWAPGTSNLELPDDVGFLFGNESGGF 196          
BLAST of mRNA_A-nodosum_M_contig110.10.1 vs. uniprot
Match: A0A7S2UP52_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UP52_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.070e-24
Identity = 74/220 (33.64%), Postives = 105/220 (47.73%), Query Frame = 1
Query:  112 IRVAVHAKAASGWAGFGVSEMGGMEGADIVYYEAAAGSITDAHAIVAGTPVTDVCTQDWTLLSAEKGTGGLVFEAERALETGDSQDRAFTDDSAEGASPTTLIAAWGNTESISYHENNFAQGQVIMFGGVENSNSDPLLGISSSPSVS-FFDITAKNFTIPTGRTWYEDTYLLASEL-----PTLDEYHVIGFEAIVQNTTSKYVHHLVLTACTGADDCG 753
            I +AV  ++ +GW GFG+SE GGM GAD+V +     ++TDAH      P+ D C Q+W L+ ++   G L+FEA R L+TGD+QDR   +DS+       +I AWG      YH  N  +G +  FG     +     G          F++ A NF IP+  T Y +      +L     P     HVIG E I+      Y+HH  L      +  G
Sbjct:   74 IHLAVAVRS-TGWVGFGISENGGMRGADVVLFSGRE-TLTDAHITDTLYPLPDKC-QNWKLVYSQTKGGFLIFEAVRLLDTGDTQDRKIINDSSLLMPAHRVICAWGEDSGYGYHGENRVKGSIRFFGSDSTGDEWETFGQRMKQEAEGSFELAANNFIIPSEETTYGEFCFFEGDLIREGMPPDTPLHVIGMEPILPKEDMPYIHHFTLYGLPSGESNG 290          
BLAST of mRNA_A-nodosum_M_contig110.10.1 vs. uniprot
Match: D7FSK3_ECTSI (DOMON domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK3_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 1.280e-23
Identity = 47/65 (72.31%), Postives = 57/65 (87.69%), Query Frame = 1
Query:   22 DEFDASSYARNASLGTDLDLFWTIDTDLQTIRVAVHAKAASGWAGFGVSEMGGMEGADIVYYEAA 216
            D+FD SSYARN SL T++D+FWT+D + + IRVAVHAKAA+GWAG G+SEMGGMEGADIV+YE A
Sbjct:   36 DDFDGSSYARNVSLDTNVDIFWTVDLEAEAIRVAVHAKAATGWAGVGISEMGGMEGADIVFYETA 100          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig110.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7FP37_ECTSI3.820e-13057.23DOMON domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LD47_ECTSI4.170e-12860.75DOMON domain-containing protein n=1 Tax=Ectocarpus... [more]
D7G216_ECTSI1.480e-12355.75DOMON domain-containing protein n=2 Tax=Ectocarpus... [more]
D7FP38_ECTSI1.650e-11456.46DOMON domain-containing protein n=2 Tax=Ectocarpus... [more]
D7G337_ECTSI1.270e-9949.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6U4MP62_HEMAN1.050e-3735.50Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S0ASV8_9STRA2.690e-3738.75Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
D7G217_ECTSI9.040e-3643.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2UP52_9STRA1.070e-2433.64Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
D7FSK3_ECTSI1.280e-2372.31DOMON domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig110contigA-nodosum_M_contig110:545443..551356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LD47
PFAMsCu2_monoox_C,Cu2_monooxygen,DOMON
Model size999
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue6.83e-129
EggNOG OGsKOG3568@1|root,KOG3568@2759|Eukaryota
Descriptionoctopamine biosynthetic process
Cds size999
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866493.0377371-CDS-A-nodosum_M_contig110:545442..5456581680866493.0377371-CDS-A-nodosum_M_contig110:545442..545658Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig110 545443..545658 +
1680866493.0488696-CDS-A-nodosum_M_contig110:549230..5494111680866493.0488696-CDS-A-nodosum_M_contig110:549230..549411Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig110 549231..549411 +
1680866493.0570092-CDS-A-nodosum_M_contig110:549709..5498851680866493.0570092-CDS-A-nodosum_M_contig110:549709..549885Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig110 549710..549885 +
1680866493.0665493-CDS-A-nodosum_M_contig110:550472..5505531680866493.0665493-CDS-A-nodosum_M_contig110:550472..550553Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig110 550473..550553 +
1680866493.0746775-CDS-A-nodosum_M_contig110:551011..5513561680866493.0746775-CDS-A-nodosum_M_contig110:551011..551356Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig110 551012..551356 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig110.10.1prot_A-nodosum_M_contig110.10.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig110 545443..551356 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig110.10.1

>prot_A-nodosum_M_contig110.10.1 ID=prot_A-nodosum_M_contig110.10.1|Name=mRNA_A-nodosum_M_contig110.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=333bp
ISRASADDEFDASSYARNASLGTDLDLFWTIDTDLQTIRVAVHAKAASGW
AGFGVSEMGGMEGADIVYYEAAAGSITDAHAIVAGTPVTDVCTQDWTLLS
AEKGTGGLVFEAERALETGDSQDRAFTDDSAEGASPTTLIAAWGNTESIS
YHENNFAQGQVIMFGGVENSNSDPLLGISSSPSVSFFDITAKNFTIPTGR
TWYEDTYLLASELPTLDEYHVIGFEAIVQNTTSKYVHHLVLTACTGADDC
GQACVEWFSSNGLYSSSLSNTSSTSTRSRSSAASYVSTEYGYEIPSFCDY
ESTSIFVWAPGVANEQLPEDVGFKFGPATGGYT
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mRNA from alignment at A-nodosum_M_contig110:545443..551356+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig110.10.1 ID=mRNA_A-nodosum_M_contig110.10.1|Name=mRNA_A-nodosum_M_contig110.10.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5914bp|location=Sequence derived from alignment at A-nodosum_M_contig110:545443..551356+ (Ascophyllum nodosum dioecious)
ATATCACGGGCTTCAGCAGATGATGAATTCGACGCCTCCTCGTACGCCCG AAATGCTTCGCTCGGCACCGATCTCGACCTCTTCTGGACCATTGATACCG ACCTCCAGACCATTCGTGTTGCTGTTCACGCAAAGGCAGCATCCGGCTGG GCTGGATTTGGCGTATCGGAGATGGGAGGAATGGAGGGAGCTGACATCGT CTACTACGAGGCCGCGGTGAGTTAAGAGCAATCCGTTATTCTCGTTTACT GAAGCTTGTGCGATTAGTCTAATCCCGTAACACTCTGTAACAGAACCCTT TGTAATCTGATTCGCGTAGTATGCCGTGATCTATGACATTCCACGTAAGT GAAATTGTATCAGACGACACCTGTCAAAGAGTTTGACGTTCTACGATATC CGCGAAGACAGCTTCGTATTCTACGCTGCTTGCCAACCAAGAGTACTACG TATTTCAAACGAATTTCTTATCCGAAAGCCATATTTCAAATGTAAAGTAC TGCATACCAAACGGTTGTACGACAGCTACCTATCATCTCAGAGCAATGCA ATGAGCATCGAAATATACCAGTACTTATCATGAGGCGGACAAGGGAGAAC GTGGTACAGAGTATATACCCTTCGTTGACGGAAATCGAGATGATGATACG CGCTCCTGTCCTGGTACAGCAGTTCACGTATCTGGTTGGCGCATCGTAAT CGCTTTTATCCTAAACTAGAAATTCTCCTCGCCTCTCGCACCTGCTTGGG AAAAATGCAGACAAGAAGAAAACACAAAAAGACACAACAAAACAAACACA TGACATACAGGCAAATAAATTAAAAGCAAAAAAAAATCCGTCTCGACTTA AAGTAATGGCTTCCCGTCACCCTCCAGGGTCAAACTGCTTGCTTTGCTCA CTCAAAGCCGTCTTTCGTTGTTGCCGGCCAATCGGCATCTCGCGGCGCCT GTTGCTTTTGTAGATGTTGTTTCGTCGTTCGCTCCGATCTCTGCTCGAAG CAAAATAGTAGTTCCCTGTTCCGGACTTGTGCAAACGTACAAAAACTACC GATACTGGCTTGAAGAGGAAAAATGTATTCCCTCTCCGTTGAATCGGTCA CAGCGCGCGATACTCCGGGTTCATCTGACCCCCTACCGATCGCGGGCAAC TGTCGTGGCGATGAATTAAATTGCGGCGGTGGCGTGGGCGGGGAAAGTAC AACGTCCATCCTTAGTCGCTCAACGTCGACCCTCATTTCAAGCGTGTATT CCTCAGGAGTATGGGGCCACCTTGGATTGTACAGCTTCGAATAAAAAGGT ACCGAACCAAAGCCAACAAGGAAGTGCTGTTCACGCATTTCGGCTATGAT CGCGATTCGGTCAAAGCCGGCCTCTCGCTTCCAGGCTTTCTGCTTCTCGA GTATCCACAAACGGCACATTTGTTTTAGTCTATGCGTTGCGGCAAGCTCC CTCACCCGGATACATTCATGCAGGCGCCAAATTGTTGACCCTATTTATCT CATCATTTTGTGGTCACATTGCTCTCTGTTTGGGAAAATCATTTTCACCA CAAGCAGATAAAAAAGAGGACTCTCGTTCACCTGTGTATCCCGCTGCCCA GGGCTGCCCTCACGGCTGCCTCCCGCAGTCCAGGTTCCCTGTCGATGTTG GCTCTCGCGTTGCTCCTCCGATCGGTGTCTCCTCAACACTGGCGCTCTTC TTCGCAGCGCTCTCGATCGGTGACGTCTGGGCGATGGTGCTCTACGGCAC TCTTCAATCCTGCCGATGTACTCCCCAGCTGTTCTTCAGACTGGGGTTGT AGAGTCTTCTACTTCACTTCAGCAATAATTCgaGGTTGTAGCTCACGTTA CGCACTCGTCGCGCTCCTTCGACTGGTGGCTCCTTTCACACTGGCGCTTC TTTGCAGCGCTCTCGGTCGGTTCCTCGGCCTGTGGTACTTGACGTACTAG CGCTCCTTTCCTGGCGCTGTCGACAGGGCCGATGACGGTCCCTGCTCTCT AGCAGGTACCATGGGGTTCCTCTTCACTCCGGGTTGCCCCCAAATCCAGG CTCACCTCTCCTTCGGCTTTTACTCTGGTGGCGCAGTCCTTGCGCTTGTG CGACAGTGGTTTCTTACGCACTCGGTCGGTGATGTCTCCGCAGTGTGCTC TTCAACAGTACTCCTTGCCGACCGGTAGTCTCGCCCGAACTCGCTACCGC AGGCTGACGCTTCGTGCTCCAAAAGCTCTGCTCTTCTTCTCAAACTTGAA GTATTCCAGAGAGCCCCAAATTACCAAGAAAAGCACAAAATAGGACAATC TCCAATCGATGCCCTCGTTAGATCAACTGGTGTAATGGAAAGTCTCTGAG CGGGATGGGTCTCACACGAGAAAGGTGGTGCTGTGCTGGGGGTTGGTTGA GCAGGCTCGACATGAACACATGTCAGACGAGTATAAAAACCGGTATATTA TTGATGTACCTCCATCCCCCTCATGGATAAAGGTATGAGACACCACAATA GGGGGGGCTAGTCAAGCGGATAAACACTAGCCTCCCAAATACGTATCATA TGTCGAAACTACGGGAGCGGTCATAGCATTCTATTGGCTAGAACAGCCTA CTAATCTATCTACATTTCGGAATCGAATCCTTTCACCCAAGTTTGTCAAG GCCGTGTCATGCAGAAACAAGGGAAATTGTAACACCGAGGTCCATGGCGA TGGAGGCGTTAAGCTGGCGAAGATGGCGCGAGAACCGACATCAAGTCGTC CAAAACCCTGTGCATCCCTGGAGTTACCCCTAGAATATTGTCCGTTCACC ACCCCTAGTTGTCTCTCGTAAGAAGAAACCGGACCGTCGTCCGATTCCAG CTTTTCCCTCAGAAATCGCTCGGTTCGGGCCCTTGATTCTCGTGCACAAG GGTTCAGCACTCCCCTGAATCTTTGACGTTCGAGCTACATTTTGTCATTG ACTAATCTGGGGCTTACTCGCCCGATAGATCGTACGACAGCGCGCTTGCG CGTGCTGCGGTGCCCTACCAGGCTTTCCGCGACAGGATCACCTGCCTCTC GCATGCGACCTCCACTCGCACGGAATCAAATTGACGCCGGAAGAGGTGCA CCGGGCAGGTACTATCCTCAACCAACCAAACCGCCGCCGCGTTTCAACCG ATCGGCTGAATTGCGTAGACAGTACGCTGGTGTTATCTCCTGACGGTAAG TCCGGTCCTACACCCGCCGGAGGGACCCCCCCTCACTCATACCCCAAGCT CAGGGTTCGGAGGAAGACGGCACACCATGGGGGACGGATTATTCCAGGGA CCCTTGACAAACTGGTTTGAGTTGAGGCAACGAGTTTAAAAGAACCAAAC TGCAGGAGATTTCACTCTAGATATAGATTGCAGCCTTGGCAAGGGAAGTC ACCCTCCCCGGAGTGAAAGTGCCGGGTCCTTCGGACCCCACAACTTTCGT TCATAGGAGCCGAACGTTACCTATTAAACGAGTCAGCGCTTACTGGTCTA ATTAGTTGATTTTAGCTGCTATAGTACCGTACAGTCTGAAGGTAGTTTTC AGGCTCTCAAGCTCGAGCCATTTCTTTACAGGGTGACTTCAGGTAGTATT CAGGCCCTCAAGCTCGTGCTATTACTTAACAGAATGACCTATACTTTGAT TCTTCCTCCGGATGCAATTTTTCCCACTGCGAAAGTCCTGACGACTAAAA TGCGACGACACACTACTAAAGTTCACGTTTCTTCCCTTTTTAATCTGTCG TACGAAATATAATGTCGATTGCGTTGACGCCAACCCAGGCTGGAAGCATC ACGGACGCACATGCGATCGTCGCGGGTACGCCAGTGACCGACGTGTGCAC TCAAGACTGGACACTGCTGTCCGCAGAGAAAGGAACCGGTGGCCTGGTAT TTGAGGCGGAGAGGGCGCTAGAAACTGGCGATTCCCAGGATCGGGCCTTC ACCGATGACAGCGCGGAAGGTGATATGTTTGTCACACGCACGTCAACAAT GAACGTGATACATATATATACGCAGAATGCGTGAGTATTTACGCGTCTAG GTGGCAAATTCGGACGTTGTGCTACCACCCACAGACGGCCTGGCCAAATA TCGACAGTTAAAGAAACGGCTATTTCTGTCGTATGGTTGCGTACTCGACA AACATAATGATTAATATGCCTGACGCCCGCGTATCCCTGAAATTGTGCGG CTCTCTGCATTCGGGTTGAGAATCTTTTAAGTGTTTACATACTTAAACTG GCGACGCTTGACCACAGGGGCCTCGCCTACGACCCTAATTGCCGCCTGGG GGAATACTGAAAGCATCAGCTATCACGAGAACAACTTTGCCCAAGGGCAG GTAATCATGTTCGGTGGTGTGGAGAACAGCAACAGTGATCCGCTCCTCGG CATCAGTTCGAGCCCGAGCGTCTCCTTCTTCGACATCACCGCAGTGAGTT AGAGCGAGAACTATCCCACATCACATCCGCTTCCATGCAAACAGAGCAAA CTTAAGTGCTCACAAGCATGACTTCCTCCAGGTCGACGCCACTTAAGCTT TAAACCTTAGCTTTTTCGCTCAATCTGGTACAGCCTCGGAGCTTCTTGGT CTGTGCTCCGGGGCACCCTTCACAAAGACTTCCTGCTGGCATAAATCCTG TTTCTTCGACTCCATCTTCACTTAGGGCTCTATGCAGTAATATTCCACGT ATTGCTGTCCCCTAGATGGACCTCATACTCACCTATTGAATGCTTTGTCT TCTATCTGCCAATTCGTCTGAAATGGAAACCTACCGCTTCGTCCAAATAT TATCTATCGCTCACGTGAAATCTCTTTGCGCCTTGTTCTTCGTACTTGAT GTTCACAATTATCAGAGGTAGCTTTTTCAGAACGCTGATCACGCAATATG TCCTCACTATAGCTGTACGCATCTCTTTTAAGTGCCACATTGAATATTTG TATGATATGCGAAGCAATCAAAATGACGTTTCGGTCTTTTCAAGTTCTCA ACACGAAACTCCGTTACACTTTTCACACAGAAAAACTTTACTATCCCGAC GGGTCGCACCTGGTACGAAGACACTTACCTCCTGGCGTCTGAACTACCAA CCCTTGATGAGGTACGGGTAGAATTACAACTTGTTTTTGTCGTCGATTGG TTCTAGATTAGAGATTTGAGTTCGCCGCCCACACATGGAACATAAAGTTG CAAAGTTCGAAACAAAATATTTTGCTGGTTTGTACTGTGTTCACTTCCAA ACTCGATTTGCCTCATGTCCGATAACTGGTTAAGAATGCGAACTCATTCC GCTATCTTGTGTCCTCAAGGGCTCACTTTGGTCGAGACTTTACCCTTGAT TAGCGTAGTGTGAGGGGTCCTTTTGCAGGGTTGACTCAGCACTGTGATTA CGTTACTGTATTACTTATGATATTATGAGTAGAGCTTAGGTATGGGCTTA TAGTCACACAACGATTTCCGCGAGAGGATCTATGTGTGGTGTCATGCGTT CCTCGACTTCCCGTGGTCTCTAACACTTGCACGTGTGGCTTCAAACTTCG TCCTCGGCCTCGCAATCAGTACCACGTCATCGGCTTCGAAGCTATCGTTC AGAATACTACTTCAAAGTACGTGCACCACCTCGTGCTCACCGCCTGCACC GGCGCCGACGACTGCGGCCAGGCTTGTGTGGAATGGTTCAGTAGTAATGG TTTATACAGCTCGAGCTTGTCCAACACGAGCTCGACCAGCACGAGATCGA GATCCTCAGCAGCTTCGTATGTCAGTACAGAATATGGATACGAAATCCCT TCATTCTGCGACTACGAGTCCACGTCCATATTTGTATGGGCGCCCGGGGT AGCTAATGAACAGCTGCCCGAAGATGTCGGTTTCAAGTTTGGCCCCGCCA CTGGTGGGTATACA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig110:545443..551356+

>mRNA_A-nodosum_M_contig110.10.1 ID=mRNA_A-nodosum_M_contig110.10.1|Name=mRNA_A-nodosum_M_contig110.10.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=999bp|location=Sequence derived from alignment at A-nodosum_M_contig110:545443..551356+ (Ascophyllum nodosum dioecious)
ATATCACGGGCTTCAGCAGATGATGAATTCGACGCCTCCTCGTACGCCCG
AAATGCTTCGCTCGGCACCGATCTCGACCTCTTCTGGACCATTGATACCG
ACCTCCAGACCATTCGTGTTGCTGTTCACGCAAAGGCAGCATCCGGCTGG
GCTGGATTTGGCGTATCGGAGATGGGAGGAATGGAGGGAGCTGACATCGT
CTACTACGAGGCCGCGGCTGGAAGCATCACGGACGCACATGCGATCGTCG
CGGGTACGCCAGTGACCGACGTGTGCACTCAAGACTGGACACTGCTGTCC
GCAGAGAAAGGAACCGGTGGCCTGGTATTTGAGGCGGAGAGGGCGCTAGA
AACTGGCGATTCCCAGGATCGGGCCTTCACCGATGACAGCGCGGAAGGGG
CCTCGCCTACGACCCTAATTGCCGCCTGGGGGAATACTGAAAGCATCAGC
TATCACGAGAACAACTTTGCCCAAGGGCAGGTAATCATGTTCGGTGGTGT
GGAGAACAGCAACAGTGATCCGCTCCTCGGCATCAGTTCGAGCCCGAGCG
TCTCCTTCTTCGACATCACCGCAAAAAACTTTACTATCCCGACGGGTCGC
ACCTGGTACGAAGACACTTACCTCCTGGCGTCTGAACTACCAACCCTTGA
TGAGTACCACGTCATCGGCTTCGAAGCTATCGTTCAGAATACTACTTCAA
AGTACGTGCACCACCTCGTGCTCACCGCCTGCACCGGCGCCGACGACTGC
GGCCAGGCTTGTGTGGAATGGTTCAGTAGTAATGGTTTATACAGCTCGAG
CTTGTCCAACACGAGCTCGACCAGCACGAGATCGAGATCCTCAGCAGCTT
CGTATGTCAGTACAGAATATGGATACGAAATCCCTTCATTCTGCGACTAC
GAGTCCACGTCCATATTTGTATGGGCGCCCGGGGTAGCTAATGAACAGCT
GCCCGAAGATGTCGGTTTCAAGTTTGGCCCCGCCACTGGTGGGTATACA
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