mRNA_A-nodosum_M_contig100.65.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig100.65.1
Unique NamemRNA_A-nodosum_M_contig100.65.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig100.65.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig100contigA-nodosum_M_contig100:878767..881358 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2592
Hectar predicted targeting categoryother localisation
Exons1
Cds size1665
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866354.9322553-UTR-A-nodosum_M_contig100:878766..8791641680866354.9322553-UTR-A-nodosum_M_contig100:878766..879164Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig100 878767..879164 +
1680866354.9579208-UTR-A-nodosum_M_contig100:880829..8813581680866354.9579208-UTR-A-nodosum_M_contig100:880829..881358Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig100 880830..881358 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866354.9444683-CDS-A-nodosum_M_contig100:879164..8808291680866354.9444683-CDS-A-nodosum_M_contig100:879164..880829Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig100 879165..880829 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig100.65.1prot_A-nodosum_M_contig100.65.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig100 879165..880829 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig100.65.1

>prot_A-nodosum_M_contig100.65.1 ID=prot_A-nodosum_M_contig100.65.1|Name=mRNA_A-nodosum_M_contig100.65.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=555bp
MFGTATISTLSRPASGQEHPRSSRGVQRTPIQQQVPASPQRPLVGSPPHS
RQGVGSTTGAMRYGGHKPVAASPVAPSPRVRVLTGAPYDTLPEGASATSL
QTSVSSLLLSPDGVSHDHGTQGNQMSVPGTLENNSGPTVGSARAMARRVN
NEGADNTSNFIDMLAQKLPPFGGSLPSPSPSPSPPIRKSHRLRPESPLPQ
TRGQLSIVPTLRRDQSFPPANPSLPEDLISSGVGDFHPICRRNSVDLDDI
FAQPTRESDRHNKEAPAAGYGRNGGQDDFASVGFRPQPGDHEQYFYDFGP
LYDSDAGPGGGDNKNNCYSATDSPTSADAAKEGPNGSLFQEGRDESMHVE
RRSSFEKLKAMIPFISQDSMQVSSGLASAAPPHGNSTSSNTGVGASPVTS
PSSTASTPSKRRGDSRGHDDGRRKKPSIAGLDTQGQKSYKTNPHLVGKRR
DGSNGKVPRGGRLGNANAAPAAGRPQTAVGLVGAASPGRGSAMQKRGCRR
HGGAEQERGSRLAPGGGALLTTFFPSVQGSSGIPSAYGTESSVTDGFILS
STRV*
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mRNA from alignment at A-nodosum_M_contig100:878767..881358+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig100.65.1 ID=mRNA_A-nodosum_M_contig100.65.1|Name=mRNA_A-nodosum_M_contig100.65.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2592bp|location=Sequence derived from alignment at A-nodosum_M_contig100:878767..881358+ (Ascophyllum nodosum dioecious)
ACGCTTTCGATAGTTTAGACCGTCGGCGGGCGAATTGAAGGAGAGGTTTA
TTGTCACACAGGCGAGGTGGAGACCAAGGAGCGAGCCCCTTGACTCAAGA
CGTGTGCGCATCGCAGTCACAAATAAGCTGAGCGCAACATCGTGTGACCC
TGAAGTTATCTCCGTCAAGCTGCTCGAACTGGTTGCGTCGAAAATCAGCT
TGCAGCTACGTACCGTACCCTACACACACTGCCTGCAGTACGAGTGCCAC
GGCCCGCTTGGAGCTTATTTTCCGCCTTCTGCTGGTCCTCTTTCCCCGTT
CACGAGGCGTACTGTTTCACCTGGCAAGGTGTCAGAGCGGACGTATTCGT
TGGCCTTGGGCCAGGGACCGAGTTACCTGCTACGTGGCTCGAGACAGCAT
GTTCGGTACAGCAACGATTTCGACGCTCAGCAGGCCAGCGTCGGGTCAAG
AACATCCGAGGTCCTCTCGGGGCGTTCAGCGAACTCCGATTCAGCAACAG
GTACCTGCCTCGCCGCAGCGGCCACTCGTAGGAAGCCCGCCGCATTCTCG
ACAAGGGGTTGGCAGCACCACTGGAGCCATGCGATACGGTGGACATAAAC
CAGTGGCAGCCAGCCCGGTGGCGCCATCGCCACGGGTCCGGGTCCTGACA
GGGGCCCCGTATGACACCTTACCGGAGGGGGCCTCTGCAACGTCCTTGCA
AACCTCCGTGTCGAGTCTCCTGCTATCGCCTGATGGGGTCAGCCACGACC
ACGGAACCCAGGGGAACCAGATGAGCGTTCCTGGGACGCTTGAAAACAAC
AGCGGACCAACAGTGGGCTCTGCTAGGGCGATGGCCAGGAGAGTGAATAA
TGAAGGCGCCGACAACACTTCCAACTTCATCGATATGCTCGCCCAAAAAT
TGCCGCCTTTTGGAGGGAGTCTTCCATCGCCGTCGCCGTCACCGTCGCCG
CCCATCAGGAAAAGCCACCGCCTAAGACCGGAATCTCCCCTGCCGCAGAC
GCGTGGTCAGCTCTCAATCGTTCCTACTCTTAGAAGAGACCAGTCCTTCC
CGCCTGCGAACCCCTCGCTCCCCGAAGACCTCATCAGCTCGGGTGTGGGG
GATTTCCATCCGATATGCCGGCGCAACTCAGTGGATCTCGATGATATTTT
TGCCCAGCCAACTCGGGAGAGCGACCGCCATAACAAGGAAGCCCCTGCCG
CGGGATATGGGAGAAATGGTGGCCAAGATGACTTCGCGTCTGTGGGGTTC
AGGCCGCAACCGGGAGATCATGAACAATACTTTTACGATTTTGGTCCTCT
GTACGACAGTGACGCTGGCCCCGGTGGCGGCGACAATAAGAACAACTGTT
ATAGTGCTACCGACAGCCCCACCAGCGCCGACGCTGCCAAGGAGGGACCC
AACGGTTCTCTGTTCCAGGAGGGTCGCGATGAGTCTATGCACGTAGAGCG
CCGCTCAAGCTTCGAAAAACTCAAGGCCATGATCCCCTTCATCTCACAGG
ACAGCATGCAGGTTTCTTCGGGACTTGCGTCCGCGGCTCCCCCTCACGGC
AACAGCACTAGCAGCAACACTGGCGTCGGTGCATCGCCGGTCACTTCGCC
GAGCTCTACAGCCTCCACGCCATCTAAGAGGCGTGGCGATTCACGCGGCC
ATGACGATGGACGACGAAAGAAACCGTCGATCGCGGGCCTCGACACGCAA
GGGCAGAAATCTTACAAGACCAACCCTCACTTGGTCGGTAAGCGGAGAGA
CGGAAGCAATGGTAAGGTGCCGCGTGGTGGAAGGCTGGGTAACGCTAACG
CGGCACCAGCAGCAGGACGGCCGCAAACGGCCGTCGGCCTGGTGGGGGCA
GCGTCGCCAGGGAGAGGGAGCGCGATGCAAAAGAGGGGGTGCAGGAGGCA
TGGGGGGGCTGAGCAGGAGCGCGGGTCGAGGCTGGCGCCTGGCGGAGGAG
CTTTACTGACAACGTTCTTCCCATCAGTCCAAGGCAGTTCGGGTATACCT
TCTGCGTACGGGACTGAATCAAGTGTGACGGATGGTTTCATCTTGTCGTC
GACCCGTGTGTGAGTTCTGTCCATGAGGACGTTCAGTGAGTCCTGATTTA
TAAAAAGTAGGTGCAGTAAACTAGTTCAGTGCTGGGGGGCGGAGGGCAAT
CATGGTGTCTGTTTGTTGTGAACTTTGAAAAACATGAAACTTTGTGACAT
ACCGAAGCAGTGTATTTTTTGCCTACAGTGAGGATTTTGTCTTTGTTTTG
TGGAAATGTGCGATTAGAGGTTGCATCGCCCCCGCGCGTCCGTCCAGCTA
TATACACCTTCGTGTCCTACCTTTCCCATCCGCGAAATTACGAACTGCGC
GAATGCTTCTGTAGCTCCATAGCTAGATCTGCTGCTGGGGGAGGAGGGGA
GCGGTCATCTGTCGAGGAACTTGCCTGTCGCTGTCCGCCTTCGATTGTTT
GTTTATAGGGAGGGATATGTACGAGAGCCAAGCATGTTCATGAACGTAGC
AGTCTGTGTAATCTGTGTACAGAAAACCTTGGAAAGCAATTTTTAGTGAG
GCTTTATACTTGATACGATACGAAGATATAATTTACCAATCA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig100:878767..881358+

>mRNA_A-nodosum_M_contig100.65.1 ID=mRNA_A-nodosum_M_contig100.65.1|Name=mRNA_A-nodosum_M_contig100.65.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1665bp|location=Sequence derived from alignment at A-nodosum_M_contig100:878767..881358+ (Ascophyllum nodosum dioecious)
ATGTTCGGTACAGCAACGATTTCGACGCTCAGCAGGCCAGCGTCGGGTCA
AGAACATCCGAGGTCCTCTCGGGGCGTTCAGCGAACTCCGATTCAGCAAC
AGGTACCTGCCTCGCCGCAGCGGCCACTCGTAGGAAGCCCGCCGCATTCT
CGACAAGGGGTTGGCAGCACCACTGGAGCCATGCGATACGGTGGACATAA
ACCAGTGGCAGCCAGCCCGGTGGCGCCATCGCCACGGGTCCGGGTCCTGA
CAGGGGCCCCGTATGACACCTTACCGGAGGGGGCCTCTGCAACGTCCTTG
CAAACCTCCGTGTCGAGTCTCCTGCTATCGCCTGATGGGGTCAGCCACGA
CCACGGAACCCAGGGGAACCAGATGAGCGTTCCTGGGACGCTTGAAAACA
ACAGCGGACCAACAGTGGGCTCTGCTAGGGCGATGGCCAGGAGAGTGAAT
AATGAAGGCGCCGACAACACTTCCAACTTCATCGATATGCTCGCCCAAAA
ATTGCCGCCTTTTGGAGGGAGTCTTCCATCGCCGTCGCCGTCACCGTCGC
CGCCCATCAGGAAAAGCCACCGCCTAAGACCGGAATCTCCCCTGCCGCAG
ACGCGTGGTCAGCTCTCAATCGTTCCTACTCTTAGAAGAGACCAGTCCTT
CCCGCCTGCGAACCCCTCGCTCCCCGAAGACCTCATCAGCTCGGGTGTGG
GGGATTTCCATCCGATATGCCGGCGCAACTCAGTGGATCTCGATGATATT
TTTGCCCAGCCAACTCGGGAGAGCGACCGCCATAACAAGGAAGCCCCTGC
CGCGGGATATGGGAGAAATGGTGGCCAAGATGACTTCGCGTCTGTGGGGT
TCAGGCCGCAACCGGGAGATCATGAACAATACTTTTACGATTTTGGTCCT
CTGTACGACAGTGACGCTGGCCCCGGTGGCGGCGACAATAAGAACAACTG
TTATAGTGCTACCGACAGCCCCACCAGCGCCGACGCTGCCAAGGAGGGAC
CCAACGGTTCTCTGTTCCAGGAGGGTCGCGATGAGTCTATGCACGTAGAG
CGCCGCTCAAGCTTCGAAAAACTCAAGGCCATGATCCCCTTCATCTCACA
GGACAGCATGCAGGTTTCTTCGGGACTTGCGTCCGCGGCTCCCCCTCACG
GCAACAGCACTAGCAGCAACACTGGCGTCGGTGCATCGCCGGTCACTTCG
CCGAGCTCTACAGCCTCCACGCCATCTAAGAGGCGTGGCGATTCACGCGG
CCATGACGATGGACGACGAAAGAAACCGTCGATCGCGGGCCTCGACACGC
AAGGGCAGAAATCTTACAAGACCAACCCTCACTTGGTCGGTAAGCGGAGA
GACGGAAGCAATGGTAAGGTGCCGCGTGGTGGAAGGCTGGGTAACGCTAA
CGCGGCACCAGCAGCAGGACGGCCGCAAACGGCCGTCGGCCTGGTGGGGG
CAGCGTCGCCAGGGAGAGGGAGCGCGATGCAAAAGAGGGGGTGCAGGAGG
CATGGGGGGGCTGAGCAGGAGCGCGGGTCGAGGCTGGCGCCTGGCGGAGG
AGCTTTACTGACAACGTTCTTCCCATCAGTCCAAGGCAGTTCGGGTATAC
CTTCTGCGTACGGGACTGAATCAAGTGTGACGGATGGTTTCATCTTGTCG
TCGACCCGTGTGTGA
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