mRNA_A-nodosum_M_contig11.23.3 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig11.23.3
Unique NamemRNA_A-nodosum_M_contig11.23.3
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig11.23.3 vs. uniprot
Match: D7G4B2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B2_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 3.760e-6
Identity = 27/33 (81.82%), Postives = 28/33 (84.85%), Query Frame = 3 
Query:  441 SGVTPLHRAAETNSCHVAQVLINAGADVNGRTA 539
            SGVTPLHRAAE NSC VAQVLINA A VN RT+
Sbjct:    9 SGVTPLHRAAEVNSCQVAQVLINADASVNVRTS 41
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11.23.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4B2_ECTSI3.760e-681.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig11contigA-nodosum_M_contig11:242557..246293 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog157072.XP_008867204.1
PFAMsAnk_2,Ank_3,Ank_4,Ion_trans,PRANC
Model size1897
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue6.21e-09
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-02_002030.1
Descriptionspectrin binding
Cds size519
COG categoryI
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig11.23.3prot_A-nodosum_M_contig11.23.3Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig11 243588..245946 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866485.885899-UTR-A-nodosum_M_contig11:242556..2435871680866485.885899-UTR-A-nodosum_M_contig11:242556..243587Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11 242557..243587 -
1680866485.9517498-UTR-A-nodosum_M_contig11:245946..2462931680866485.9517498-UTR-A-nodosum_M_contig11:245946..246293Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11 245947..246293 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866485.9054885-CDS-A-nodosum_M_contig11:243587..2437431680866485.9054885-CDS-A-nodosum_M_contig11:243587..243743Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11 243588..243743 -
1680866485.9173486-CDS-A-nodosum_M_contig11:244068..2442011680866485.9173486-CDS-A-nodosum_M_contig11:244068..244201Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11 244069..244201 -
1680866485.9284008-CDS-A-nodosum_M_contig11:244561..2446981680866485.9284008-CDS-A-nodosum_M_contig11:244561..244698Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11 244562..244698 -
1680866485.938445-CDS-A-nodosum_M_contig11:245853..2459461680866485.938445-CDS-A-nodosum_M_contig11:245853..245946Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11 245854..245946 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig11.23.3

>prot_A-nodosum_M_contig11.23.3 ID=prot_A-nodosum_M_contig11.23.3|Name=mRNA_A-nodosum_M_contig11.23.3|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=173bp
MGDIWQAARSNNVGKVKLLLESGVSPNATRWSGVTPLHRAAETNSCHVAQ
VLINAGADVNGRTAWGWYSPLHLAAQNGHEQVAEVLLKAGARWRLLTKRL
QSPYDLAVARGREAEALRMQKPSAVSHQPISVSSHQPSAIGRQPSANFGS
QPSAVGRQPSLIIQTTKFTYVA*
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mRNA from alignment at A-nodosum_M_contig11:242557..246293-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig11.23.3 ID=mRNA_A-nodosum_M_contig11.23.3|Name=mRNA_A-nodosum_M_contig11.23.3|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3737bp|location=Sequence derived from alignment at A-nodosum_M_contig11:242557..246293- (Ascophyllum nodosum dioecious)
CGGGTATATAGCAATTACTTGGCTTCCAAAGAAATGATCTGTAAACGGTA
ACACCCGACATTTCTGCGAGAGAAAAAACACTTGACTTGCTGTCTTGTCT
GCGCGCGACTCGTATAGATCCAGGCGAAAATACAATCGTCGGATGAGTCA
TTGACCAGTGCCACCCCGGCGACAGCCTCGTATTTTCTCGCAACGATCGA
GACTGAGCGCTCCTTCAGCCTTCTTTCGAATCTGTGATCTTTTGCTTATT
CGTTACCAGGAAGAGTGATTTTTTCTAATCCTGGCTAGAGCTAACTATAT
CGTCCTTTTTTTGGTCGATCAGGTTCGGGCAAGGGAGAAGCAAAGAAATG
GGGGACATCTGGCAGGCCGCACGCTCAAACAACGTGGGCAAAGTCAAGCT
TTTGTTGGAGAGCGGGGTCAGTCCTAACGCAACACGCTGGGTGAGCACTC
CGCTGCAACATGTCCAGCACAAAGCATTCATCCGTCTGTGTGTATTTCTT
CTTTCCACGCTCATCACCAGATGATACTGTACCTTCCAGGATTTTATTTC
CGGTGACCGTTTGTGTTCAAAGAGAAATCTGAACGCATCTAAGGGCCGGC
ATCTAAACCTCCCAAGCATTCACCCTCGGGGGGAACCAGGGCTAACCCGG
GGAATAACCCAGCGATACCACTGTGTGGCGCTTTTCTCACGAAAGTATCC
CTTAATTATGAAGATTTTTTTACAGCGCGAGCGGTCTTCGCGCTTTTTGT
CGAAAGGATCTCGAAGCGCGTAAAAACTCGTGGTTTCCATACCTTATCTC
GACCAAAAGATCTCTCTGGGCGTATAATGTTAGGGTCGCTCGAAACTAGA
CCCGGGATTGCTGCTCGCGTGTGTGCGTGTGTATGGAACCATACTTTTGG
TTGACCCAAATGATGCACACAAGGAGAAATTCGGTTTCCAACGATCCCAA
TTTTGTGCGCGATCAATGTTTCTTTTCCTGCCTAAACCGTGGAGACCGTT
CGCGCCACATCAATCATACATTAACACTATACTCGTTCATTTGGCGCAAA
GGAAATATCGAAAGGTTAAAACCGCCACAAGGGTGAACGGGGTGTACCGT
ATAGCCCTGGTTGCTCACCACACTTCCTCAGAGAGACGCCTTCCATGGCT
TTGACCTGAGAATGGAAGAAAAAAAAAGCCGAAATGCCTTTAATTTATCA
AGACATGGATTTCATGGCGTTAGACTTCATGTGCGCTTCATTGTCAACAG
CGTTAAAGTACAGCGGGGGCAAATCCCCGAGGACTATTTTTCTCTTAGCT
CTAGTAGGGAAGAATAAATGAGGGCAATCCCCGGGTTGTCATTTTTCCCT
TTACTATAATAAGTATAATTCTTACAAACCTGTAAAAAGCGGAGGTGAAA
ATTAGCCCAATCGGCCACGAAATGTAATATAATAACATTGAATCAACAAT
ATATCGAGGCTCTTGGGAGTCAGTTCGGTAAGCTGTCTATCTTTGGCGCG
CGCTCCTAGTTCCCGCCTGAGAGCCGTTCTTCTCTTTCAACGTCTCCCCA
AGAACCCACGACGTGGCTCTGCCGGGCGCCTTCTCGTGGATTCAGAGCGG
GGTGACGCCTCTCCACCGGGCGGCCGAGACCAACAGCTGCCACGTGGCGC
AAGTGCTTATCAACGCCGGCGCAGACGTCAACGGGAGAACAGCGTGGGGG
TGGTACTCTCCTCTACACCTTGCCGCCCAAAAGTGAGCCAAAGCAGCCAG
CGCCAACCTTGAACTAACTAACACCTTGTACCATTAAGTGATTGTGATCA
GGCCTCTCTCGGGCAAAACAGACACTCGTTTTTCTGGTGGTCAACGAGAT
TAGCAGGCTAAATATTTATTTGTGACATTCAGTGATACCTTCCAAAGATA
CGGTGCTGTATTACGAAGTAATAACTTATCTCACTTGGCTGCTCAAACCG
AGTTCCAACAGGATGTGCGGCCATTCGCCTGTACACGCTGCACTGGGGCG
TGTCTCTCTTTTGACACAAGAAAATTCCATTCCGAGAAATACTGAAGGGT
TCGGGGGGAATTCGTACGCGATCCTCTATGCTCCCTCGCCAGTGGACACG
AACAAGTGGCCGAGGTGCTTCTGAAAGCAGGGGCACGATGGCGACTACTC
ACCAAGCGACTGCAAAGCCCCTACGACCTCGCGGTCGCCCGCGGCCGTGA
AGCCGAAGCCCTGCGAATGCAGAAGGTACACTCTACCAAGTAGTACATCA
TCAACGCCCTTATACTGTTTGCGTGAGAATATATCTTTCGATACATTGAT
AAGACGCTCCAGCCGGGGTCACAACAGTAGAAAGGCCACACAACCTTCCC
ACTGCGGTACATGCCTTATATTATTAATTTTTATCGCGAAAAGGGTTCAG
CCCTCCCTTCCCTCGTCGACGTTGAGGTCGAATTTTGTGTACCCACGACA
AATTAGCCGCTCTCCACGTGTTGGGCATTGTATGAGTTAGAATCCCAGTT
CGTGTGACTGCAGCTAGGATTCGGACTCAATTCCCAATTGCGGTTTCCAG
CCATCAGCCGTCAGCCATCAGCCAATTTCGGTTTCCAGCCATCAGCCGTC
AGCCATAGGCCGTCAGCCATCAGCCAATTTCGGTTCCCAGCCATCAGCCG
TCGGCCGTCAGCCATCACTCATCATACAGACTACAAAGTTTACGTATGTC
GCATAACACAAATGTTACTTTTGTACTGTTCTCTGCGCGGAAACGTCCTC
CACCCCTGCCGAAGCGAGGCCCCACGAGGTACTGGAGAAAATTCTAGGAT
GCAGAGAAATCTTGTACTCAGAAGCAGTTGCGGAGGATGGCGGAGAGTGC
ACGCACCAACTCTGTAGAACAAGTGTGTTTGAAGTAGAGCGAGTAGATAC
AACATGTACCGTCGGTACCAGATATGTTTCCCCCTCGCCTGGCTTGCAAA
TCGGCAGCAGCAGTAGCGGCGACGGCTGCTCAGTCCCCGCCCGCGTCGCA
ACCACAGATGTCACGCAAGATCGTGGAGGAAAGGCGTAGACTACGCTTGG
GTCTCGGTTCCGAGGGAAGTGACAGCGCGAAAGACGGGAACGTTGCCATC
TCAAGCGGTGGGGCACTGCCACAAGCGGCTACATGAGCAGGAGCAGCAGC
AGCAGCAGATACACCAAGAACAGCTACACCGGTAGCACTAATCCAGCAGT
AACACTGATGCGCGATAGAGAACAAGTCCGAGGGGGAATACTGAGCGGGG
AATGTACGCCTACATGTGCGTTGATTCGCAGAGTGAGCAGAGAGACACAA
GTCATTTATTTCGTTGATTTTATTTTTAGAGATAGATGCGGCCGGATGAG
AGGGTAACAATGCTCCCGGTGCCGCCCGCAGCTGTTCCGCAGCCGGTGCA
TAGTATAAAGTTCATGACCAGCGGGGAAGGGAAGTGAAAAGTCGGTCCTC
TTTGGGAAATAAAACGCTAGCGTTTTGCCGAACCGTGTATCGTACACCTC
CGCGAGGTTGGTTTTAGCACGAAACGATACAGAGTTCGGCCTGATCTTGT
GTTTTACCTCGTGTTATAGAAACATAAGATTATTATAGAACCAGATTGAC
TCCATCCGCCCCCTCCGCCCCCAAAAAAACGCCTTCGGGCAAGCTCAACA
CTTCTACTGTGTAACACTAGGCATGTATAAATTTACATAGCTTTACATTC
ATGCCAAGACAAAACACACCACCCTCTCAGCCACCCG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig11:242557..246293-

>mRNA_A-nodosum_M_contig11.23.3 ID=mRNA_A-nodosum_M_contig11.23.3|Name=mRNA_A-nodosum_M_contig11.23.3|organism=Ascophyllum nodosum dioecious|type=CDS|length=519bp|location=Sequence derived from alignment at A-nodosum_M_contig11:242557..246293- (Ascophyllum nodosum dioecious)
ATGGGGGACATCTGGCAGGCCGCACGCTCAAACAACGTGGGCAAAGTCAA
GCTTTTGTTGGAGAGCGGGGTCAGTCCTAACGCAACACGCTGGAGCGGGG
TGACGCCTCTCCACCGGGCGGCCGAGACCAACAGCTGCCACGTGGCGCAA
GTGCTTATCAACGCCGGCGCAGACGTCAACGGGAGAACAGCGTGGGGGTG
GTACTCTCCTCTACACCTTGCCGCCCAAAATGGACACGAACAAGTGGCCG
AGGTGCTTCTGAAAGCAGGGGCACGATGGCGACTACTCACCAAGCGACTG
CAAAGCCCCTACGACCTCGCGGTCGCCCGCGGCCGTGAAGCCGAAGCCCT
GCGAATGCAGAAGCCATCAGCCGTCAGCCATCAGCCAATTTCGGTTTCCA
GCCATCAGCCGTCAGCCATAGGCCGTCAGCCATCAGCCAATTTCGGTTCC
CAGCCATCAGCCGTCGGCCGTCAGCCATCACTCATCATACAGACTACAAA
GTTTACGTATGTCGCATAA
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