prot_A-nodosum_M_contig11.23.3 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig11.23.3
Unique Nameprot_A-nodosum_M_contig11.23.3
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length173
Homology
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BLAST of mRNA_A-nodosum_M_contig11.23.3 vs. uniprot
Match: D7G4B2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B2_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 3.490e-7
Identity = 27/33 (81.82%), Postives = 28/33 (84.85%), Query Frame = 0 
Query:   32 SGVTPLHRAAETNSCHVAQVLINAGADVNGRTA 64
            SGVTPLHRAAE NSC VAQVLINA A VN RT+
Sbjct:    9 SGVTPLHRAAEVNSCQVAQVLINADASVNVRTS 41
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11.23.3 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4B2_ECTSI3.490e-781.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002110Ankyrin repeatSMARTSM00248ANK_2acoord: 1..28
e-value: 2500.0
score: 2.1
coord: 32..61
e-value: 0.0018
score: 27.5
coord: 66..95
e-value: 0.015
score: 24.5
IPR002110Ankyrin repeatPFAMPF12796Ank_2coord: 6..92
e-value: 8.1E-14
score: 52.0
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 32..64
score: 12.87639
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 66..98
score: 10.97998
IPR036770Ankyrin repeat-containing domain superfamilyGENE3D1.25.40.20coord: 2..118
e-value: 3.0E-31
score: 110.1
IPR036770Ankyrin repeat-containing domain superfamilySUPERFAMILY48403Ankyrin repeatcoord: 4..113
NoneNo IPR availablePANTHERPTHR24193ANKYRIN REPEAT PROTEINcoord: 7..113
NoneNo IPR availablePROSITEPS50297ANK_REP_REGIONcoord: 66..91
score: 10.68342
NoneNo IPR availablePROSITEPS50297ANK_REP_REGIONcoord: 32..60
score: 11.983458

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig11contigA-nodosum_M_contig11:243588..245946 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig11.23.3mRNA_A-nodosum_M_contig11.23.3Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig11 242557..246293 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig11.23.3 ID=prot_A-nodosum_M_contig11.23.3|Name=mRNA_A-nodosum_M_contig11.23.3|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=173bp
MGDIWQAARSNNVGKVKLLLESGVSPNATRWSGVTPLHRAAETNSCHVAQ
VLINAGADVNGRTAWGWYSPLHLAAQNGHEQVAEVLLKAGARWRLLTKRL
QSPYDLAVARGREAEALRMQKPSAVSHQPISVSSHQPSAIGRQPSANFGS
QPSAVGRQPSLIIQTTKFTYVA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR036770Ankyrin_rpt-contain_sf