mRNA_A-nodosum_M_contig10980.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10980.2.1
Unique NamemRNA_A-nodosum_M_contig10980.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10980.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10980contigA-nodosum_M_contig10980:4853..11145 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size342
Hectar predicted targeting categoryother localisation
Exons3
Cds size339
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866483.8415-CDS-A-nodosum_M_contig10980:4853..49581680866483.8415-CDS-A-nodosum_M_contig10980:4853..4958Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10980 4854..4958 -
1680866483.8510962-CDS-A-nodosum_M_contig10980:5277..54061680866483.8510962-CDS-A-nodosum_M_contig10980:5277..5406Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10980 5278..5406 -
1680866483.8596995-CDS-A-nodosum_M_contig10980:11040..111451680866483.8596995-CDS-A-nodosum_M_contig10980:11040..11145Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10980 11041..11145 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10980.2.1prot_A-nodosum_M_contig10980.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10980 4854..11145 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10980.2.1

>prot_A-nodosum_M_contig10980.2.1 ID=prot_A-nodosum_M_contig10980.2.1|Name=mRNA_A-nodosum_M_contig10980.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=113bp
GFQGPVVAVCGGKSRNKDSFEAVLEAVQTRLTPDQVKTMEMSYDDDNDSV
LAHAAANKSPDVFGAVMSGIENDVTPQELKTLLTQRDFKGRSLLATAAAN
GEKASFEAVLEAV
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mRNA from alignment at A-nodosum_M_contig10980:4853..11145-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10980.2.1 ID=mRNA_A-nodosum_M_contig10980.2.1|Name=mRNA_A-nodosum_M_contig10980.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=6293bp|location=Sequence derived from alignment at A-nodosum_M_contig10980:4853..11145- (Ascophyllum nodosum dioecious)
GGGTTTCAAGGGCCGGTCGTTGCTGTCTGTGGCGGCAAAAGTAGGAACAA
GGACTCTTTCGAGGCCGTTCTTGAGGCCGTCCAAACGAGGTTAACGCCCG
ATCAGGTGAGTCGTTTTGAATATGGTTAGAAAAAACAATCAATCATACTC
TTCCTCTAGCAAAATTTGTTTGTGTCCGTGACGTGTGGCCACGCGCACTT
AATTCATGGAGATAAACTTACCTTTCGGTGATAATTTGAAATCGGTTTTA
CTCAGCAATAGCTAGAAAACCGTCCTTGGTCATCGCGGGGAGTTGTTCCT
GTGGCACTGTATCATCTTTTATACCCAATTTTTTGTCAGAGTTGAGCGTT
CGAATGTTCTTCCACCTGCTAAACTTCTGTTGTTGTTGTTGTTGTTGTTG
TTTTCTCACATTAACTGATCCGCTACGAATCCAGCCGTGGTCACAAGATA
GACGGAACCAAACCGAATCAACCGGGAATCGGAGATGAGCATGGAAAGCA
TACAGAAAAGGACGGGCAAGAAGTAGCCAGCAAAGGACATCGTCGCGATA
AAATAGAGAACATAAACAAAAACACACAGACAGTAGAAACAAACTAGAGC
CAACCGCATAAAAACGCAGGAAGGTAGCCCTATAAGCGGTGGGATACAAC
CCAGGCATGAAGACAATGGCAAGGGCAACGGGTGCAACACACAGCGAAAT
ATAACACAGATGGAGAGAAGGAGACAACAATCAAGGAAATAAAGCAATGA
GTTAACTACCCAAAAAGGAAAGAGGAGCGGAACCCCTGTCGGGCTCATCT
ATATCGCAGGAAGAATACAAATTAAAACAAAACACACAAAGTCGCACACG
TTGTTTTTATCTCACATTATTAACTGGTCCGCTACGAATCCAGTTGTGGT
CACAAGATAGAGGAAGTTTCACCAAAACAAATTGGGGGCGAACACGGTCG
GAAAAGAAAAGAAAAGAAAAGAAAGCAGACAGAAGGAAGCGGGCGTGGCA
GTAGCCTGCAGAGGGCACCTTTGCCAGGGAGGGATTCAGGAGGGGAACAA
GGGACAAAAACAAAACAAACCAGGGCAATCACATATAATATGCGTAGGGC
AAGAAAGGCAACCATATACATATATAAATGGTGCAAGACAGCCCAGATAG
GAGGACAAAGCAAGGACAAGGACAACGGAATAAAATGAAGGAGGAGGGAA
AGGGGTATAGCAATCAAATCAAATAAGGAAAGAGGTACAAAGCCACAGGA
GGGGCATCGCGAGTACCGGACTCCCTACGGTATATCACAGGGAGAAAAAA
CACCTAGAAACAACAGCAACGAGGCAAAACAAAACAAAACAAAAAACAAA
AATCGCACACGTACTTATTGTACGACTTCACTAACCTAGCGCTGGAGTTG
CACGTTGGATTGACGAAGGTCCGCGCGTCGCCAGGCGCTGTCGAGTGCTT
CCGCTCCCTCTCGACCCCCGGTGCCACTTGTCCATGTTCTTCGCAGCAGT
CATCCAGTCCCGTCCATCCTTGACAACAACTCCGAATGCGACCCACTTCC
GTCCTTTGCCCTTGCGCGGGATCGCGCCGAAGGCCTCGAGATTTTTCTGT
AGGCAGTCCACCCACGACGTCGCCGGTCGACCTCCTCGCTTGGGTCCTTG
CACCGCCAGCCGCCCAAACATGACTCGCTTTGACAGCCTTGAGTCGCCTT
GTCGTACCAGGCCCCGGCGAACCCAAGTTGGCGCTTCCGAATTGTCGTTT
CGATGCGTTCGGAACCGGTCCTCTCGAGAACCTCCCTATACGATAGGGGT
TTATACCCGATGCGGTCCTTGCGCCGAAAGCCGATAATGCGCAAGAGTAG
CTTGTGGTGGGCAGTACGTAGGCTGCTAAAGTCCTGGGAGCGCATAGTCC
ACGTGGCACATCCGTACAGCATAGCTTCCATTACCTCCGCTTTGAAAAGC
CTGATTTTGAGCGACAGTCGGGCATTCCGTCGGTCGTACAGTTGGGAACT
GTATTTCCTGACACTCGCCCAAGCGGCGCCGATACGACGCTTAATCTCGA
TGTCAAGGTCCGCGCTCTCGCTGATAGCACCACCAAGGTACACAAACTCG
GTCGTCTGTTTATACCGTTGTCCTGCCGCCTCAATTCGCAGCGCGTTCGA
CGTTGTGTGGGGATGGGACCACAGGTGCATGGCCTCGGTCTTTTTTCTGA
CACTGTCAGTCCGAATTCCTGGCATGACAACTATAACGCCCATCATCCTG
GTGAGCCCACGAGGCGATGTCGACACCACCCCATCATCGTCTGCATACAG
CATCCCCCACACCGCCCGCCGGACCATTTCCAACGTCCCCTCCTTCCTGG
GTCTGCCATCCTCACCCTTCGGCGCATCATCGAGGTACACCAAGTCCGAA
ACGATCAGCGGGTCCTCCGCGAACCTCTGTAGGACCACTGTGATGACCGC
CGCAAAAATATATTGAACAATAGCGGTGACAACACATCCTTGCCGGAGTC
CCTGGCAAACATTAAACCACGCCAAGAAATCTCCATCATCCAACTGTACG
CGAGCCCTCATACCATCGTGAGACATGCGGATGACCTTGATCATCCGAGG
CGGGACTCCAAAACGGGCAAGTATTTCCCATAATAGCACACGATCGACCG
AGTCGTATGCTTTTGCCAGATCGATGAAGCAAATCTCTAGGGAAGTGTTG
CTTGTCCGTCCCAGTTCCTGAAGTCTGCGCACGACGAACATCATATCGGT
TGTCGAGCGTTGGGGTCGGAAACCGCACTGTTCTTCGGGAGGATCCCAGC
TTCTTCGCAGAAGTCGCCAAGTCGGTTGGCCACGATTTTGAGGAGAACCT
TGCCAGCATGCGCGACCAGAGACAGGCCCCTGTAGTTGCTACATTCGGTT
CGATCCTTCTTCTTATGTATAACTTTTATGGTGGCATCCTTCCACCCCTG
CGGTACTTCCCCGTCATCCATACAGCCACAATGATTTCGTGGAATGGGAG
TAAGATTTCGTGGGAACTGTCGGAAAGCCCAAGTTTGAGCAGCTCCACCG
GCAGCTCATCCGGTCCCATAGCCTTGCCATTGGCCATAGATCTCAGGGCC
TTTTTTGTCTCCTCTCACAACCGGCGGATCTCCGAGTGACAGGGCTATTG
GCTTTTGCGGTAGGCCCTCGATAATTGTTCGATTGAGGGTGACCGAGGTC
GTGTTGAGCAAGGAAGTGAAATATCGTCTCCACCTCGCACGGATCTCGTC
GGGCTTCCGTAGGAGCTTTCCGTTCTCGTCCCTGATATACTGCGCGCCTC
TTAGTTTCTTACCCTGTAATTTCCATCCTCCTTTGAGATGCCCATACCAT
CCTCTTAGGTCACCGGCTGCGATGAACTCCTCGAGTTCACAGGCGAACAC
CTCCAGGTACCTGTCCTCTGCAGCTTGAATGACGTCCCTGAGTTTTTTGC
ATGCCGTCCGCAGCGCGCGGAAAGCAGAGCCGCCAGCCAATGTGCCGTGT
ACCGCCTTCCGGGCCTCCTCCTCTCCGTCCAGGCTTCTTCAAATTCATCA
TGCATTGCCTCGTCTTCCAGCAACCCAGAAATACGGGACTGTCGGATTTG
GCCTGGCATAACCTCCTCTGCGGACCGTAGGAGTGTGTCGGTGAAAAGGG
CCGCTTTTTCGCCGACTGTGCCCCCGAGCCCCGAGTTCGGTCTGCGTGAG
CTGGGTGGCTACAAGTTGAATCAGCCGTTTGCGTCGGTCGGTGTCAGACG
TGATTGCTCGTCTGTCAATACTCTTGCGCCCTGTGGGGCTCGCTGTTTTC
GATTACGGGCAAATCTCCGTGGGAGGCGGACTCTTGCGCACACGATATTG
TGGTCAGAGTCCGCATGCGGCTGCAAGTGAACAGTGACATTTCGAACAAG
CTTGCGATGTGGTTGTCGCGTGATAATGTAGTCAATACGTTTCCTATCCG
CGGGTCGGGTACCGTTGAATGTACGAGACGTGCATCCCTTGGGGACGGAG
AAGAATGTGTTGACGAGGGCAAGCTTGTTGTCACCCGCAAACCGCAGGAG
CGAGGTTCCGTTGCTGTCGCTCAACCGGGTGTCCCTGCCGTATGCCCCAA
TTACTTTACAGTCCTCTTCTCTTATACGTACACCAGTTCTAGCATTAGCA
TCTATTAAAACAAACAGATAGTCGCTGCTGGGCACTCGGCTAACAGCACT
TTTCCAAATCCGCCCAAACACAGCCTTCTGTTCCCGCGTATTGGACACAG
TATCTGTCGGGCCATATGCCCACAATAAAGGTGACAGCGTTGGACTTGCC
TGTCAAGTTGAAAGTCATCGACATCAGACGCTCGTTCGTAAGTTCCTGTG
TCCATGTAGCTTCGCGGATGATAGACTCCTTGACCGCTAGTCCCACCCCA
TGCTGTCCGGCCCGACCAGTGCTCCCGTCTACCCCGCTACAGAACACGCG
GTATCCTGCCGCGGCGAATTCAGTCCGCCCGGTCTTCGAGTCTCCTGTAG
TCCTATGACGTCACAGCCGAGCACTTTACATTTCTGCAAAAGCACCTCCG
CATGGCCGGCCCCACGGCGTCCCGTAAGGGACAATGAACGAACGTTCCAG
GTCGCTATATTGAGCTCCCCGGTGCGGGACCGTGCCCTAGGCACATTTTG
ACTTGTCTTTGCAATGCGCCGCCTCTCTGGTCGTGTCCTTCTCCTACATT
TCCTAGCAAACCTCTTTTTTCTGTTACTGATTTTTTGTTTGGTCCATCTA
TCCAGGTACATGCCTTGCTTGTGTGTCTCGCCACTGAGTGGGTTCAGCAG
TCCCACTCTGCGTCGGCCGCATCTCTCATCACCTCCAGCGTACCGAATCT
GTTGCTTACTCACGCTCGTCCATCTCCAATCTGCTCGCTTTCCGCGGCGG
TGCCCCGAGGCTGGGAAAAACTCCACAGCACCGGGGTTGAGCTTAAAGCC
CATCACCACCAACGCCGTCTGTAGCCTAGGCCACAGGCAGCGTCCCAATC
CTCTAAGCTACTGCTGTGTCGGTGGTAACTTTGAGTATGGGAAACTTGAA
AATTCTGGCTAGACGCGATTTCTTAGCTGTTTTAGATAGAGGCAAAAAAC
AAGACCACTGTCAGTGTCAGAAAAAAAGCTGGTCGTTAGATTTCTCTTCT
AAATACTCTTTTCATCCTGATATGACACTTGCCGCGATTTTGTAGCTTTT
GAAGGGTTACGGGCCGAGACTCAAAAGTGCAGTTCACGGTAGACATCATC
CGATTTCAAACTCTAAAAGTATGCCGTGGGTCTTTTGATGTTCTGCTTTC
GAAGCTTTTGTAAGGTTTTAAGCTACAGGCCCAAACATGTAGAATTTTGC
TCATCAATTGCACATTTTATCCTGTAGCACAAAACACCCAGTGAACCACG
CCTGGCGAGGGCAGGGAGCCCGCCGAACATTTTCACGAGGACTGTACGAC
GTACAAAGAACGTTTCCCCCTCATCCCCTGTGTTTCAGCTGTAAAGACAT
AATGCCACACGACGGTTGTTGTGAAAAACAGGCAGTATAGCTGAATTTCT
CCTTTGAAGCTGCTTCTCTACCTACAGCGTGCCAGACACGTTATCCTGTC
TATTAGTCGAGCTAGACCATATAGGCAAATCAAGCACGACAACAGTCTTT
GGTGCTTACTTATAACAGTGGACCGCGTGTGTTCCAGGAGTCTGACTGTC
GCTGCTCCACTTGTTTGCATGATATTATTGCCACGGCAGGTCAAGACCAT
GGAGATGTCCTACGATGATGACAACGATTCTGTCCTCGCCCATGCGGCGG
CAAACAAGAGCCCGGATGTGTTCGGGGCGGTAATGTCTGGTATCGAGAAT
GATGTCACACCTCAAGAGGTATGGAACAACGACGATTCGGACTTGTTGAT
CCGTCACATGTTTGAGGGTCGGATGCACCCTGACCAGCTCTCGATGCCGA
AATTAACGTGACTTTCTCGATAACGATTGATGCCAACCCTAACTTATTTT
TCTCTAATACTTCGTAATAGGCATATAATCATGGTGGAAAGCTTCTACTC
ACGGTAATCCCATTCATCACGCTACGCGCCCCGCTAAGCCGATACCACGT
CAGCATGTTTCGAACACGTCCGTGAGATGGTACCCTCGTGGCCGTACATT
CCCATGATATTGGCCAACTCGACACATGGGAACGCAGTTGAAAACACTGC
TGACTCAACGGGATTTCAAGGGCCGGTCCTTGCTGGCTACGGCGGCTGCA
AACGGGGAGAAGGCTTCTTTCGAGGCCGTCCTTGAGGCCGTTA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10980:4853..11145-

>mRNA_A-nodosum_M_contig10980.2.1 ID=mRNA_A-nodosum_M_contig10980.2.1|Name=mRNA_A-nodosum_M_contig10980.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=339bp|location=Sequence derived from alignment at A-nodosum_M_contig10980:4853..11145- (Ascophyllum nodosum dioecious)
GGGTTTCAAGGGCCGGTCGTTGCTGTCTGTGGCGGCAAAAGTAGGAACAA
GGACTCTTTCGAGGCCGTTCTTGAGGCCGTCCAAACGAGGTTAACGCCCG
ATCAGGTCAAGACCATGGAGATGTCCTACGATGATGACAACGATTCTGTC
CTCGCCCATGCGGCGGCAAACAAGAGCCCGGATGTGTTCGGGGCGGTAAT
GTCTGGTATCGAGAATGATGTCACACCTCAAGAGTTGAAAACACTGCTGA
CTCAACGGGATTTCAAGGGCCGGTCCTTGCTGGCTACGGCGGCTGCAAAC
GGGGAGAAGGCTTCTTTCGAGGCCGTCCTTGAGGCCGTT
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