prot_A-nodosum_M_contig1096.6.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1096.6.1
Unique Nameprot_A-nodosum_M_contig1096.6.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length174
Homology
BLAST of mRNA_A-nodosum_M_contig1096.6.1 vs. uniprot
Match: D8LGL2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGL2_ECTSI)

HSP 1 Score: 288 bits (738), Expect = 1.800e-97
Identity = 151/176 (85.80%), Postives = 159/176 (90.34%), Query Frame = 0
Query:    1 CQITVRAVVSSVLPRR---QSLVISPEFQHILRILNTNIDGRRKVQYSLTSIKGVGRRFSNLICKKAEVDPNKRQERRPSGEMTADEIEKLVAIIQNPRQFKIPDWFLNRQRDWKTGKTTQISSQQIDQKLREDLERLKKIRSHRGIRHFWGVRVRGQHTKTTGRRGKIVAAGGRK 173
            C +T+     SVL RR    SLVISPEFQHILRILNTNIDGRRKVQYSLTSI+GVGRRF+NLICKKAEVDPNKR     +GEMTADEIEKLVAIIQNPRQFKIPDWFLNRQ+DWKTGKTTQISSQ IDQKLR+DLERLKKIRSHRGIRH+WGVRVRGQHTKTTGRRGKIVAAGGRK
Sbjct:   22 CVLTISCRSGSVLLRRVRAMSLVISPEFQHILRILNTNIDGRRKVQYSLTSIRGVGRRFANLICKKAEVDPNKR-----AGEMTADEIEKLVAIIQNPRQFKIPDWFLNRQKDWKTGKTTQISSQTIDQKLRDDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGKIVAAGGRK 192          
BLAST of mRNA_A-nodosum_M_contig1096.6.1 vs. uniprot
Match: A0A6H5KYA8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYA8_9PHAE)

HSP 1 Score: 280 bits (715), Expect = 1.460e-94
Identity = 142/156 (91.03%), Postives = 148/156 (94.87%), Query Frame = 0
Query:   18 SLVISPEFQHILRILNTNIDGRRKVQYSLTSIKGVGRRFSNLICKKAEVDPNKRQERRPSGEMTADEIEKLVAIIQNPRQFKIPDWFLNRQRDWKTGKTTQISSQQIDQKLREDLERLKKIRSHRGIRHFWGVRVRGQHTKTTGRRGKIVAAGGRK 173
            SLVISPEFQHILRILNTNIDGRRKVQYSLTSI+GVGRRF+NLICKKAEVDPNKR     +GEMTADEIEKLVAIIQ PRQFKIPDWFLNRQ+DWKTG TTQISSQ IDQKLR+DLERLKKIRSHRGIRH+WGVRVRGQHTKTTGRRGKIVAAGGRK
Sbjct:    2 SLVISPEFQHILRILNTNIDGRRKVQYSLTSIRGVGRRFANLICKKAEVDPNKR-----AGEMTADEIEKLVAIIQTPRQFKIPDWFLNRQKDWKTGTTTQISSQTIDQKLRDDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGKIVAAGGRK 152          
BLAST of mRNA_A-nodosum_M_contig1096.6.1 vs. uniprot
Match: A0A7S2BE88_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BE88_9STRA)

HSP 1 Score: 234 bits (596), Expect = 1.900e-76
Identity = 114/152 (75.00%), Postives = 133/152 (87.50%), Query Frame = 0
Query:   18 SLVISPEFQHILRILNTNIDGRRKVQYSLTSIKGVGRRFSNLICKKAEVDPNKRQERRPSGEMTADEIEKLVAIIQNPRQFKIPDWFLNRQRDWKTGKTTQISSQQIDQKLREDLERLKKIRSHRGIRHFWGVRVRGQHTKTTGRRGKIVAA 169
            SL+ISP+FQHILRILNTNIDG RKV +SLT+I G+GRRF+NLICKKAEVDPNKR     +GE+T DE+EKLVAIIQNP+QFKIP WFLNRQ+D+KTG+  Q  S  +  KLREDLERLKKIR+HRG+RH+WG+RVRGQHTKTTGRRGK +AA
Sbjct:    2 SLIISPDFQHILRILNTNIDGTRKVMFSLTAITGIGRRFANLICKKAEVDPNKR-----AGELTQDEVEKLVAIIQNPKQFKIPMWFLNRQKDYKTGRYQQAFSNNLGAKLREDLERLKKIRAHRGLRHYWGIRVRGQHTKTTGRRGKTMAA 148          
BLAST of mRNA_A-nodosum_M_contig1096.6.1 vs. uniprot
Match: F0XYV2_AURAN (Uncharacterized protein n=4 Tax=Pelagomonadales TaxID=54409 RepID=F0XYV2_AURAN)

HSP 1 Score: 233 bits (593), Expect = 6.020e-76
Identity = 113/152 (74.34%), Postives = 135/152 (88.82%), Query Frame = 0
Query:   18 SLVISPEFQHILRILNTNIDGRRKVQYSLTSIKGVGRRFSNLICKKAEVDPNKRQERRPSGEMTADEIEKLVAIIQNPRQFKIPDWFLNRQRDWKTGKTTQISSQQIDQKLREDLERLKKIRSHRGIRHFWGVRVRGQHTKTTGRRGKIVAA 169
            SLVISP+FQHILR+LNTNIDGRRKV ++LTSI GVGRRFSN++CKKA VD +KR     +GE+TADE+EKLVAIIQNP+QFKIP WFLNRQ+D+KTGK +Q  +  + QKLREDLERLKKIR+HRG+RH+WG+RVRGQHTK+TGRRGK +AA
Sbjct:    5 SLVISPDFQHILRVLNTNIDGRRKVMFALTSIPGVGRRFSNVVCKKAAVDAHKR-----AGELTADEVEKLVAIIQNPKQFKIPAWFLNRQKDYKTGKYSQAFANTLQQKLREDLERLKKIRAHRGLRHYWGIRVRGQHTKSTGRRGKTMAA 151          
BLAST of mRNA_A-nodosum_M_contig1096.6.1 vs. uniprot
Match: A0A836C976_9STRA (Ribosomal protein S13 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C976_9STRA)

HSP 1 Score: 232 bits (592), Expect = 6.550e-76
Identity = 116/144 (80.56%), Postives = 126/144 (87.50%), Query Frame = 0
Query:   19 LVISPEFQHILRILNTNIDGRRKVQYSLTSIKGVGRRFSNLICKKAEVDPNKRQERRPSGEMTADEIEKLVAIIQNPRQFKIPDWFLNRQRDWKTGKTTQISSQQIDQKLREDLERLKKIRSHRGIRHFWGVRVRGQHTKTTGR 162
            LV+ P+FQHILRILNTNIDGR KV Y+LT + GVGRRFSNLICKKAEVD  KR     +G +TADEIEKLVAIIQNPRQFK+PDWFLNRQRDWKTGK+ Q  +Q I QKLREDLERLKKIRSHRGIRH+WGVRVRGQHTKTTGR
Sbjct:    1 LVVGPDFQHILRILNTNIDGRIKVMYALTKVPGVGRRFSNLICKKAEVDHTKR-----AGMLTADEIEKLVAIIQNPRQFKVPDWFLNRQRDWKTGKSGQTFAQNIAQKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGR 139          
BLAST of mRNA_A-nodosum_M_contig1096.6.1 vs. uniprot
Match: W7TCB7_9STRA (40s ribosomal protein s18 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TCB7_9STRA)

HSP 1 Score: 234 bits (597), Expect = 5.140e-75
Identity = 111/156 (71.15%), Postives = 135/156 (86.54%), Query Frame = 0
Query:   18 SLVISPEFQHILRILNTNIDGRRKVQYSLTSIKGVGRRFSNLICKKAEVDPNKRQERRPSGEMTADEIEKLVAIIQNPRQFKIPDWFLNRQRDWKTGKTTQISSQQIDQKLREDLERLKKIRSHRGIRHFWGVRVRGQHTKTTGRRGKIVAAGGRK 173
            SL+I+PEFQHILRILNTN+DG R VQY+LTSIKGVGRRF+N++CKKAE+D N+R     +GE+T +++E+++AI+ NP+ FKIPDWFLNRQRDWKT K +Q +S  +D KLREDLERLKKIRSHRGIRH+WGVRVRGQHTKTTGRRGK V   G+K
Sbjct:   62 SLIITPEFQHILRILNTNVDGTRSVQYALTSIKGVGRRFANVVCKKAEIDLNQR-----AGELTQEKLEEVIAIVSNPKAFKIPDWFLNRQRDWKTNKPSQATSNVVDTKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGKTVGPAGKK 212          
BLAST of mRNA_A-nodosum_M_contig1096.6.1 vs. uniprot
Match: A0A7S0SKK9_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SKK9_9CHLO)

HSP 1 Score: 228 bits (580), Expect = 2.030e-73
Identity = 105/160 (65.62%), Postives = 134/160 (83.75%), Query Frame = 0
Query:   14 PRRQSLVISPEFQHILRILNTNIDGRRKVQYSLTSIKGVGRRFSNLICKKAEVDPNKRQERRPSGEMTADEIEKLVAIIQNPRQFKIPDWFLNRQRDWKTGKTTQISSQQIDQKLREDLERLKKIRSHRGIRHFWGVRVRGQHTKTTGRRGKIVAAGGRK 173
            PR  SL++  +FQHILR+LNTN+DGR KV Y+LTSIKG+GRRF+N++CKKAE+D  KR     +GE++A E+E L+ I+ NPRQF+IPDWFLNRQ+D+K G+  Q+SS  +D KLR+DLERLKKIR+HRG+RH+WG+RVRGQHTKTTGRRGK V  GG+K
Sbjct:   38 PRTMSLIVGDDFQHILRVLNTNVDGRSKVMYALTSIKGIGRRFANVVCKKAEIDMGKR-----AGELSAAELESLMVIVSNPRQFRIPDWFLNRQKDYKDGRYLQLSSNALDTKLRDDLERLKKIRNHRGLRHYWGIRVRGQHTKTTGRRGKTVGIGGKK 192          
BLAST of mRNA_A-nodosum_M_contig1096.6.1 vs. uniprot
Match: A0A6P7WE00_IXOSC (40S ribosomal protein S18 n=23 Tax=Arachnida TaxID=6854 RepID=A0A6P7WE00_IXOSC)

HSP 1 Score: 223 bits (569), Expect = 2.630e-72
Identity = 107/156 (68.59%), Postives = 133/156 (85.26%), Query Frame = 0
Query:   18 SLVISPEFQHILRILNTNIDGRRKVQYSLTSIKGVGRRFSNLICKKAEVDPNKRQERRPSGEMTADEIEKLVAIIQNPRQFKIPDWFLNRQRDWKTGKTTQISSQQIDQKLREDLERLKKIRSHRGIRHFWGVRVRGQHTKTTGRRGKIVAAGGRK 173
            SLVI  +FQHILR+LNTNIDGRRKV ++LT+IKGVGRRFSN++CKKA+VD NKR     +GE+T +E+EKL+ I+ NPRQ+KIPDWFLNRQ+D K GK +Q++S  ++ KLREDLERLKKIR+HRG+RHFWG+RVRGQHTKTTGRRG+ V    +K
Sbjct:    2 SLVIPDKFQHILRVLNTNIDGRRKVMFALTAIKGVGRRFSNMVCKKADVDLNKR-----AGELTEEEVEKLITIMSNPRQYKIPDWFLNRQKDIKDGKFSQVTSNALENKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of mRNA_A-nodosum_M_contig1096.6.1 vs. uniprot
Match: A0A7S3PSF1_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PSF1_9STRA)

HSP 1 Score: 221 bits (562), Expect = 2.860e-71
Identity = 105/150 (70.00%), Postives = 132/150 (88.00%), Query Frame = 0
Query:   18 SLVISPEFQHILRILNTNIDGRRKVQYSLTSIKGVGRRFSNLICKKAEVDPNKRQERRPSGEMTADEIEKLVAIIQNPRQFKIPDWFLNRQRDWKTGKTTQISSQQIDQKLREDLERLKKIRSHRGIRHFWGVRVRGQHTKTTGRRGKIV 167
            +LV+S +FQHILRILNTNIDGR+KV Y+LT IKGVGRRFSN+ICKKAE++ +KR     +GE+  DE+E+LVAIIQNP QF+IP WFLNR++D KTGK +Q+ S Q++QKLREDLERLKK+R+HRG+RH+WG++VRGQHTKTTGRRG+ V
Sbjct:    3 ALVVSQDFQHILRILNTNIDGRQKVMYALTKIKGVGRRFSNMICKKAEINMSKR-----AGELQPDEVERLVAIIQNPLQFRIPKWFLNRKKDVKTGKYSQVFSNQLEQKLREDLERLKKMRAHRGVRHYWGIKVRGQHTKTTGRRGRTV 147          
BLAST of mRNA_A-nodosum_M_contig1096.6.1 vs. uniprot
Match: D2D961_JATCU (S18.A ribosomal protein n=3 Tax=rosids TaxID=71275 RepID=D2D961_JATCU)

HSP 1 Score: 221 bits (562), Expect = 2.950e-71
Identity = 101/150 (67.33%), Postives = 132/150 (88.00%), Query Frame = 0
Query:   18 SLVISPEFQHILRILNTNIDGRRKVQYSLTSIKGVGRRFSNLICKKAEVDPNKRQERRPSGEMTADEIEKLVAIIQNPRQFKIPDWFLNRQRDWKTGKTTQISSQQIDQKLREDLERLKKIRSHRGIRHFWGVRVRGQHTKTTGRRGKIV 167
            SLV + EFQHILR+LNTN+DG++K+ ++LTSIKG+GRRF+N++CKKA+VD NKR     +GE++A+E++KL+ I+ NPRQFKIPDWFLNRQ+D+K GK +Q+ S  +D KLR+DLERLKKIR+HRG+RH+WG+RVRGQHTKTTGRRGK V
Sbjct:    2 SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKR-----AGELSAEELDKLMVIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV 146          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1096.6.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGL2_ECTSI1.800e-9785.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYA8_9PHAE1.460e-9491.03Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A7S2BE88_9STRA1.900e-7675.00Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
F0XYV2_AURAN6.020e-7674.34Uncharacterized protein n=4 Tax=Pelagomonadales Ta... [more]
A0A836C976_9STRA6.550e-7680.56Ribosomal protein S13 n=1 Tax=Tribonema minus TaxI... [more]
W7TCB7_9STRA5.140e-7571.1540s ribosomal protein s18 n=2 Tax=Monodopsidaceae ... [more]
A0A7S0SKK9_9CHLO2.030e-7365.63Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
A0A6P7WE00_IXOSC2.630e-7268.5940S ribosomal protein S18 n=23 Tax=Arachnida TaxID... [more]
A0A7S3PSF1_9STRA2.860e-7170.00Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
D2D961_JATCU2.950e-7167.33S18.A ribosomal protein n=3 Tax=rosids TaxID=71275... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001892Ribosomal protein S13PIRSFPIRSF002134RPS13p_RPS13a_RPS18e_RPS13ocoord: 15..173
e-value: 2.0E-33
score: 112.6
IPR001892Ribosomal protein S13PFAMPF00416Ribosomal_S13coord: 30..163
e-value: 2.1E-48
score: 163.9
IPR001892Ribosomal protein S13PROSITEPS50159RIBOSOMAL_S13_2coord: 31..165
score: 30.927467
IPR001892Ribosomal protein S13HAMAPMF_01315Ribosomal_S13_S18coord: 28..173
score: 21.642612
NoneNo IPR availableGENE3D1.10.8.50coord: 17..101
e-value: 1.6E-31
score: 110.4
NoneNo IPR availablePANTHERPTHR10871:SF340S RIBOSOMAL PROTEIN S18-RELATEDcoord: 18..166
NoneNo IPR availablePANTHERPTHR1087130S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18coord: 18..166
IPR02743730s ribosomal protein S13, C-terminalGENE3D4.10.910.1030s ribosomal protein s13, domain 2coord: 113..163
e-value: 9.8E-24
score: 84.9
IPR018269Ribosomal protein S13, conserved sitePROSITEPS00646RIBOSOMAL_S13_1coord: 142..155
IPR010979Ribosomal protein S13-like, H2THSUPERFAMILY46946S13-like H2TH domaincoord: 29..165

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1096contigA-nodosum_M_contig1096:67803..71258 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1096.6.1mRNA_A-nodosum_M_contig1096.6.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1096 67803..71258 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1096.6.1 ID=prot_A-nodosum_M_contig1096.6.1|Name=mRNA_A-nodosum_M_contig1096.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=174bp
CQITVRAVVSSVLPRRQSLVISPEFQHILRILNTNIDGRRKVQYSLTSIK
GVGRRFSNLICKKAEVDPNKRQERRPSGEMTADEIEKLVAIIQNPRQFKI
PDWFLNRQRDWKTGKTTQISSQQIDQKLREDLERLKKIRSHRGIRHFWGV
RVRGQHTKTTGRRGKIVAAGGRK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001892Ribosomal_S13
IPR02743730s_Rbsml_prot_S13_C
IPR018269Ribosomal_S13_CS
IPR010979Ribosomal_S13-like_H2TH