prot_A-nodosum_M_contig1096.26.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_A-nodosum_M_contig1096.26.1
Unique Name	prot_A-nodosum_M_contig1096.26.1
Type	polypeptide
Organism	Ascophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length	1175

Homology

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BLAST of mRNA_A-nodosum_M_contig1096.26.1 vs. uniprot
Match: D7FP41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP41_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 5.560e-23
Identity = 111/307 (36.16%), Postives = 135/307 (43.97%), Query Frame = 0

Query:  249 GCGLPQATVENEYSRPRLHHRAPLVPASPGGRSRGVSGSGDPPVRRSKRKVESTHATRTPERNLPDEQRESLDRGARSQDDSAASGVIMSDGDGGGKSCEGSDGKGDDNSDAKWSXXXXXXXXXXXXXXXGGDDQRIAISGPGRERGDREVTSGDGIIDAGQRTETGASTGASTLGADNVPTTSATTPAAIEGGGGEKQSAVVDHPEPDLANEEKRALDGTQQRRRRSTFPDGKKPG---PQRAVGYPISAVSAVLRQLHMRVLSDEEMTMLDKVTGEGVAEHLVEMRTILDEQKQRLEMKIRSLQD 552
            G   P+  VEN+YSRPRLHHRAP V  S  G   GVS +   PVRRSKRKVES HAT  PE    ++QR+    GA S D                                                         A+S        R+  SG                                         G                 EK A+   Q RRR+ST  DG++ G    QR +GYP+++ +AVLRQLHMRVLS EEM MLD+VTGEG+AEHLVEMRTIL++QK+RLE+KIRS+ D
Sbjct:  900 GSKRPKPAVENDYSRPRLHHRAPPVAPSTLGAGGGVSTA---PVRRSKRKVESMHATPQPEGVTAEDQRQQQTTGAVSSD---------------------------------------------------------ALS--------RDTRSG-----------------------------------------GXXXXXXXXXXXXXXXXXEKGAVK-VQPRRRKSTSLDGERRGGGAQQREMGYPMTSGAAVLRQLHMRVLSVEEMKMLDQVTGEGIAEHLVEMRTILEDQKRRLEIKIRSMHD 1096

[Close]

BLAST of mRNA_A-nodosum_M_contig1096.26.1 vs. uniprot
Match: A0A6H5KSV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSV1_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 4.120e-22
Identity = 114/307 (37.13%), Postives = 137/307 (44.63%), Query Frame = 0

Query:  249 GCGLPQATVENEYSRPRLHHRAPLVPASPGGRSRGVSGSGDPPVRRSKRKVESTHATRTPERNLPDEQRESLDRGARSQDDSAASGVIMSDGDGGGKSCEGSDGKGDDNSDAKWSXXXXXXXXXXXXXXXGGDDQRIAISGPGRERGDREVTSGDGIIDAGQRTETGASTGASTLGADNVPTTSATTPAAIEGGGGEKQSAVVDHPEPDLANEEKRALDGTQQRRRRSTFPDGKKPGP---QRAVGYPISAVSAVLRQLHMRVLSDEEMTMLDKVTGEGVAEHLVEMRTILDEQKQRLEMKIRSLQD 552
            G   P+  VEN+YSRPRLHHRAP V  S  G   GVS +   PVRRSKRKVES HAT  PE    ++QR       R Q    A+G + SD                                              A+S        R+  SG                                       G                   EK A+   Q RRR+ST   G++ G    QR V YP+++V+AVLRQLHMRVLS EEM MLD+VTGEG+AEHLVEMRTIL++QK+RLEMKIRS+ D
Sbjct:  994 GSKRPKPAVENDYSRPRLHHRAPPVAPSTLGAGGGVSTA---PVRRSKRKVESMHATPHPEGVTAEDQR-------RQQ----ATGAVGSD----------------------------------------------ALS--------RDTRSG---------------------------------------GXXXXXXXXXXXXXXXXXXSEKGAVK-VQPRRRKSTSLGGERQGEGVQQREVEYPMTSVAAVLRQLHMRVLSVEEMKMLDQVTGEGIAEHLVEMRTILEDQKRRLEMKIRSMHD 1192

The following BLAST results are available for this feature:

BLAST of mRNA_A-nodosum_M_contig1096.26.1 vs. uniprot

BLAST of mRNA_A-nodosum_M_contig1096.26.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7FP41_ECTSI	5.560e-23	36.16	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KSV1_9PHAE	4.120e-22	37.13	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 533..553
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 563..592
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1061..1161
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..173
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 811..832
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 546..562
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 193..208
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..491
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 387..401
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 346..362
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 450..481
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1084..1098
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 291..325
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 411..437
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 938..986
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 546..618

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A-nodosum_M_contig1096	contig	A-nodosum_M_contig1096:178567..183069 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ascophyllum nodosum dioecious OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_A-nodosum_M_contig1096.26.1	mRNA_A-nodosum_M_contig1096.26.1	Ascophyllum nodosum dioecious	mRNA	A-nodosum_M_contig1096 177467..184533 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_A-nodosum_M_contig1096.26.1 ID=prot_A-nodosum_M_contig1096.26.1|Name=mRNA_A-nodosum_M_contig1096.26.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=1175bp
MATIVTAEVASKPETDVSAQAAVLRVSRSPLMVGSSSPKRSSPAAVGEIL
DSGDAATSLEPHTPAGDGTDPAASVSERPTERRKQQSQDLGEIEVTVTDE
NDGGEDDGSPRPRDAETTSLSSTPRLSMSVPPPAKRVVEPKTRRSHHRKI
HPPPEEEELVDGRKFKRRRESAPAAMATPDTRAFAGSRVGDANNDGDGDD
DSNDRAAGGERGSARQARVTISSSGPARAKEGVVRGRGRTRSRGTRPLGC
GLPQATVENEYSRPRLHHRAPLVPASPGGRSRGVSGSGDPPVRRSKRKVE
STHATRTPERNLPDEQRESLDRGARSQDDSAASGVIMSDGDGGGKSCEGS
DGKGDDNSDAKWSDGGGVDGSGSNGGGAGGDDQRIAISGPGRERGDREVT
SGDGIIDAGQRTETGASTGASTLGADNVPTTSATTPAAIEGGGGEKQSAV
VDHPEPDLANEEKRALDGTQQRRRRSTFPDGKKPGPQRAVGYPISAVSAV
LRQLHMRVLSDEEMTMLDKVTGEGVAEHLVEMRTILDEQKQRLEMKIRSL
QDDSRDDIDADSASGDQSQGEEQQQQPQNNGVVDNSRQPTPGHPESALLE
DRGGCDATDRAEEGVSVNPVAASAAGSAAAVTASAPHAAAPTTGANAAAV
TALATPGQFDQSAEGVAMDCNPHVSAVQGNVAAAAAASASLRYLGPPPAV
AGPTVVSSAEQSPSLAPLGGASAPAQGGAPFHMGTPFHHAIQAVTPLLPA
EGDHQMRLVQHQGATNGVWLGQTTAHGALLSPNNTVCANNQKFLFQGHEW
AAAAAAAAAAPTPLPPTPHGGTVPPPPAEFAPPAGFMPPVSSLPLSSFPS
SIPLAPLGWPQAMLSGGAPPAEMMGVAGAKESGYALGGGREGHSRVLDIA
KRGEAGKLTEAEAAAMAAGWRYYHDSVKTQQSVQLVSVGGRSGHHDHIEG
GRNGTREDAAVGGDGGACAAEDEDSEEEGSGGAARCSPMLGRSVGLGGAR
AARSGKSGRGLENLKLKARSRGDSLGGEINGINGPARGVSGGVEKSLERA
TPTVPSLVDRQTSSSGPPVGFAAPAAATQGVRRVEQQLGDTRGSQPGGSD
SYAPGVRRGDAGDAPVARMGNPAVVTSVAINGGRGSDQGDAAASRGLEEQ
APTLAPVVDDQRRKMAAQAMLSFR*