mRNA_A-nodosum_M_contig1095.18.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1095.18.1
Unique NamemRNA_A-nodosum_M_contig1095.18.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1095.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1095contigA-nodosum_M_contig1095:235662..236607 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FNX8
PFAMsCHAT,FHA,NACHT,SH2
Model size247
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.67e-11
EggNOG OGs28NM8@1|root,2QV6X@2759|Eukaryota
Cds size243
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866479.612898-CDS-A-nodosum_M_contig1095:235663..2357011680866479.612898-CDS-A-nodosum_M_contig1095:235663..235701Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1095 235664..235701 -
1680866479.626656-CDS-A-nodosum_M_contig1095:235984..2361321680866479.626656-CDS-A-nodosum_M_contig1095:235984..236132Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1095 235985..236132 -
1680866479.6345038-CDS-A-nodosum_M_contig1095:236550..2366071680866479.6345038-CDS-A-nodosum_M_contig1095:236550..236607Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1095 236551..236607 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1095.18.1prot_A-nodosum_M_contig1095.18.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1095 235664..236607 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1095.18.1

>prot_A-nodosum_M_contig1095.18.1 ID=prot_A-nodosum_M_contig1095.18.1|Name=mRNA_A-nodosum_M_contig1095.18.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=81bp
FLAFEAEEAHLCGVVKRFDADTLKKLFQHGSKPDLVFLESGGSHTHGRGI
AEVGVPHVIAVESQTELPDEIRKIFSRAFYH
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mRNA from alignment at A-nodosum_M_contig1095:235662..236607-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1095.18.1 ID=mRNA_A-nodosum_M_contig1095.18.1|Name=mRNA_A-nodosum_M_contig1095.18.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=946bp|location=Sequence derived from alignment at A-nodosum_M_contig1095:235662..236607- (Ascophyllum nodosum dioecious)
TTCCTGGCGTTCGAGGCCGAGGAAGCGCATCTTTGCGGCGTGGTGAAGCG
TTTTGATGTAAGTGACAGGGGCCTAATGAATGGAGACGATGCATGTGCGT
TTTCTCAAGTCTGTAGGCATGTAGATAGCCGAAAAATGTTTCCATCTAGG
CCTGCGCCGACCGGCCGTGCACGTTTGCATCCTCTATTGACAATTCTGTC
AGATAATCATATAACCCCTCCAGGATGTGCGCCCAATACAATATGAAGTC
AAGTATAAAACTTCTCCATGAGGTTTGCGTCGGATCTAGATGTGTTGTTG
TTGTGCTAAGTTTCTCTTCTTGTTGAGGGGGTGGGTCATCCGTTCGTTGA
AATCGCCGGCGCCACCCCCTGTAGAAACTGAGGTCATGGTTACGAAGAAA
TGAGAAGGCCGCATGTATCATACCGGACATGTCCGAAAAAAGCAACCTTG
CGGGTTTCATGATGTTCATTGGTAGGCGGACACGCTGAAGAAGCTCTTTC
AACATGGTTCCAAGCCCGACCTAGTGTTCTTGGAATCAGGTGGTTCACAC
ACCCACGGCAGGGGGATAGCGGAGGTCGGGGTGCCCCATGTGATTGCGGT
CGAATCACAAACGGAGTTACCCGGTGCGTCACAGGGTAACCTCACTAAAT
AGGCGCGCTCGGCAGTTGAAATGAAGTAGTTCCATTGAGAGAGGTGATGT
TGGTCGGGGGAAATTTGAGGAGACAGGGGGTACATGGAAGAACACCAAGT
CTCTTCTTTGCCATTGTGCATTCATGCTCAGCAATACCCGCTCCACCATA
CGCTAAAGGGAGGGTCCTGTCTTGAATCACGTTGGGGTGTACCGCGCTAC
TAATAGTCGCTTCCCTTGCCATCCCTCACGCTCTCAATCTTCCGTGATGC
TCTCAGACGAAATAAGGAAAATCTTCAGCAGAGCTTTTTACCACCC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1095:235662..236607-

>mRNA_A-nodosum_M_contig1095.18.1 ID=mRNA_A-nodosum_M_contig1095.18.1|Name=mRNA_A-nodosum_M_contig1095.18.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=243bp|location=Sequence derived from alignment at A-nodosum_M_contig1095:235662..236607- (Ascophyllum nodosum dioecious)
TTCCTGGCGTTCGAGGCCGAGGAAGCGCATCTTTGCGGCGTGGTGAAGCG
TTTTGATGCGGACACGCTGAAGAAGCTCTTTCAACATGGTTCCAAGCCCG
ACCTAGTGTTCTTGGAATCAGGTGGTTCACACACCCACGGCAGGGGGATA
GCGGAGGTCGGGGTGCCCCATGTGATTGCGGTCGAATCACAAACGGAGTT
ACCCGACGAAATAAGGAAAATCTTCAGCAGAGCTTTTTACCAC
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