mRNA_A-nodosum_M_contig1095.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1095.3.1
Unique NamemRNA_A-nodosum_M_contig1095.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1095.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1095contigA-nodosum_M_contig1095:23288..24150 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size863
Hectar predicted targeting categoryother localisation
Exons1
Cds size519
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866479.0314689-UTR-A-nodosum_M_contig1095:23287..235401680866479.0314689-UTR-A-nodosum_M_contig1095:23287..23540Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1095 23288..23540 -
1680866479.049785-UTR-A-nodosum_M_contig1095:24059..241501680866479.049785-UTR-A-nodosum_M_contig1095:24059..24150Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1095 24060..24150 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866479.04092-CDS-A-nodosum_M_contig1095:23540..240591680866479.04092-CDS-A-nodosum_M_contig1095:23540..24059Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1095 23541..24059 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1095.3.1prot_A-nodosum_M_contig1095.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1095 23541..24059 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1095.3.1

>prot_A-nodosum_M_contig1095.3.1 ID=prot_A-nodosum_M_contig1095.3.1|Name=mRNA_A-nodosum_M_contig1095.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=173bp
MVAEGQANTKTRKRTEGAAKAVQAKHGDSWTVQRVQDGPKTSTCLSVMAE
PPDLPCREDVLVENGATAPTLCLPTLERRTTIAAGGLHPTRKASIAARII
YNQPPLRLYSTEETNSKGTNLRTQIPYLSFDSSFLSTAHSCRRVIETKSM
QNRMFNPGGFQGRLRACLFLGT*
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mRNA from alignment at A-nodosum_M_contig1095:23288..24150-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1095.3.1 ID=mRNA_A-nodosum_M_contig1095.3.1|Name=mRNA_A-nodosum_M_contig1095.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=863bp|location=Sequence derived from alignment at A-nodosum_M_contig1095:23288..24150- (Ascophyllum nodosum dioecious)
GGGAGTTTGACGAGATGGCGAAAGATTAGCGCGAAGTATAGATCAGCATG
TAGCAAGTCTAGAGCATGACTCTCGTCAGCCACGTCTTACCATGGTGGCA
GAAGGGCAAGCAAACACGAAGACGCGCAAGCGCACGGAGGGCGCCGCCAA
AGCAGTTCAAGCGAAGCACGGGGATAGCTGGACTGTACAAAGGGTTCAAG
ACGGACCGAAGACCTCGACCTGTTTGAGCGTGATGGCCGAACCTCCCGAT
CTCCCTTGCAGGGAAGACGTTTTGGTCGAGAACGGCGCTACGGCGCCCAC
GTTGTGTCTCCCAACCTTGGAGAGGCGCACAACAATAGCCGCTGGGGGCT
TACATCCCACCAGAAAAGCCTCTATAGCTGCGAGGATAATCTACAACCAG
CCACCTCTTCGGCTTTACTCGACCGAGGAGACGAATTCAAAGGGGACAAA
CTTGAGGACTCAGATTCCATACCTCTCGTTCGACAGCAGTTTCTTGTCTA
CTGCCCATTCTTGCCGGAGGGTTATCGAGACAAAATCAATGCAAAATAGG
ATGTTCAATCCAGGCGGTTTTCAAGGTCGTCTCCGCGCCTGTCTATTTTT
GGGAACGTGACGCGCTTTGCTTTGTGGTGAGGTTATGCGTGTGGGAGCGG
CTGGTGACGAGCTGCAGCGTTTTTTGGAGGATTGATGTCTGGGCATCAAC
TTGAAGGAGACGAACCGTTTACGCCATACGTATTGTAGTCTCGCGTTTAG
GCGAGATCAGTTTTGCTTTGGGGATTCCCCTTTGTAGTACCGTCACAAGC
CCAAAGTCTTTATTATCAGTACGGGCCCCCACGCCCAAGCTAACCCAGGA
AAAGGAAGAGAGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1095:23288..24150-

>mRNA_A-nodosum_M_contig1095.3.1 ID=mRNA_A-nodosum_M_contig1095.3.1|Name=mRNA_A-nodosum_M_contig1095.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=519bp|location=Sequence derived from alignment at A-nodosum_M_contig1095:23288..24150- (Ascophyllum nodosum dioecious)
ATGGTGGCAGAAGGGCAAGCAAACACGAAGACGCGCAAGCGCACGGAGGG
CGCCGCCAAAGCAGTTCAAGCGAAGCACGGGGATAGCTGGACTGTACAAA
GGGTTCAAGACGGACCGAAGACCTCGACCTGTTTGAGCGTGATGGCCGAA
CCTCCCGATCTCCCTTGCAGGGAAGACGTTTTGGTCGAGAACGGCGCTAC
GGCGCCCACGTTGTGTCTCCCAACCTTGGAGAGGCGCACAACAATAGCCG
CTGGGGGCTTACATCCCACCAGAAAAGCCTCTATAGCTGCGAGGATAATC
TACAACCAGCCACCTCTTCGGCTTTACTCGACCGAGGAGACGAATTCAAA
GGGGACAAACTTGAGGACTCAGATTCCATACCTCTCGTTCGACAGCAGTT
TCTTGTCTACTGCCCATTCTTGCCGGAGGGTTATCGAGACAAAATCAATG
CAAAATAGGATGTTCAATCCAGGCGGTTTTCAAGGTCGTCTCCGCGCCTG
TCTATTTTTGGGAACGTGA
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