mRNA_A-nodosum_M_contig10944.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10944.2.1
Unique NamemRNA_A-nodosum_M_contig10944.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig10944.2.1 vs. uniprot
Match: A0A1E7F0G0_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F0G0_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.490e-16
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:   55 GVSRHSDKHAPRDFPEAQGAFKVLMIHWILQVARRIAFRCVLHRSGSQDIRR 210
            G+ RHSDKHA    P+AQ AFK+LMIH +LQ A RIAFRCVLHR G+ DI R
Sbjct:    3 GIHRHSDKHATGKIPKAQCAFKILMIHEVLQFALRIAFRCVLHRCGNLDIHR 54
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BLAST of mRNA_A-nodosum_M_contig10944.2.1 vs. uniprot
Match: B8CEF4_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CEF4_THAPS)

HSP 1 Score: 73.6 bits (179), Expect = 1.140e-15
Identity = 36/50 (72.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:   55 GVSRHSDKHAPRDFPEAQGAFKVLMIHWILQVARRIAFRCVLHRSGSQDI 204
            GVS HSDKHA   +P+AQ AFK LMIH +LQ A RIAFRCVLHR G QDI
Sbjct:   28 GVSGHSDKHALGHYPKAQCAFKSLMIHEVLQFALRIAFRCVLHRCGIQDI 77
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BLAST of mRNA_A-nodosum_M_contig10944.2.1 vs. uniprot
Match: K0S3C5_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S3C5_THAOC)

HSP 1 Score: 72.8 bits (177), Expect = 1.920e-15
Identity = 37/68 (54.41%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:    1 TLIVRQTPPTGGRRRLAIGVSRHSDKHAPRDFPEAQGAFKVLMIHWILQVARRIAFRCVLHRSGSQDI 204
            T+ V+ TP     ++   GV  HSDKHA  ++P+AQ AFK+LMIH +LQ   RIA RCVLHR G QDI
Sbjct:    3 TVTVQLTPAVLQPQQWLSGVQGHSDKHALGNYPKAQCAFKILMIHEVLQFVLRIAVRCVLHRCGIQDI 70
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BLAST of mRNA_A-nodosum_M_contig10944.2.1 vs. uniprot
Match: A0A524MI88_9PROT (Uncharacterized protein n=1 Tax=Nitrosomonadales bacterium TaxID=2026761 RepID=A0A524MI88_9PROT)

HSP 1 Score: 71.2 bits (173), Expect = 2.590e-14
Identity = 34/52 (65.38%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:   55 GVSRHSDKHAPRDFPEAQGAFKVLMIHWILQVARRIAFRCVLHRSGSQDIRR 210
            GV  HS +HA    PEAQ AFK+LMIH +LQ A RIAFRCVLHR G+ DI R
Sbjct:   68 GVHEHSTRHATGHIPEAQCAFKILMIHEVLQFALRIAFRCVLHRCGNLDIHR 119
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BLAST of mRNA_A-nodosum_M_contig10944.2.1 vs. uniprot
Match: R1EX34_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EX34_EMIHU)

HSP 1 Score: 61.2 bits (147), Expect = 2.440e-10
Identity = 32/50 (64.00%), Postives = 36/50 (72.00%), Query Frame = 3 
Query:   60 EQTLRQACSQGFPGSARCVQSFDDSLDSASRKTYRISLRSSS*WEPRHPS 209
            E  L + C +  PG A CVQ FDDSL+SA R TYRISLRSSS  EPR+PS
Sbjct:    2 EAPLEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPS 51
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BLAST of mRNA_A-nodosum_M_contig10944.2.1 vs. uniprot
Match: R1ESX1_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1ESX1_EMIHU)

HSP 1 Score: 61.2 bits (147), Expect = 2.500e-10
Identity = 32/50 (64.00%), Postives = 36/50 (72.00%), Query Frame = 3 
Query:   60 EQTLRQACSQGFPGSARCVQSFDDSLDSASRKTYRISLRSSS*WEPRHPS 209
            E  L + C +  PG A CVQ FDDSL+SA R TYRISLRSSS  EPR+PS
Sbjct:    2 EAPLEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPS 51
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BLAST of mRNA_A-nodosum_M_contig10944.2.1 vs. uniprot
Match: K5UIC4_PHACS (Uncharacterized protein n=1 Tax=Phanerochaete carnosa (strain HHB-10118-sp) TaxID=650164 RepID=K5UIC4_PHACS)

HSP 1 Score: 59.3 bits (142), Expect = 2.860e-10
Identity = 31/41 (75.61%), Postives = 32/41 (78.05%), Query Frame = 3 
Query:   90 GFPGSARCVQSFDDSLDSASRKTYRISLRSSS*WEPRHPSL 212
            G PGSARCVQ FDDSL+SA   TYRISLRSSS  EPR P L
Sbjct:    4 GIPGSARCVQRFDDSLNSAIHITYRISLRSSSMREPRDPLL 44
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BLAST of mRNA_A-nodosum_M_contig10944.2.1 vs. uniprot
Match: R1D6I6_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D6I6_EMIHU)

HSP 1 Score: 61.2 bits (147), Expect = 3.350e-10
Identity = 32/50 (64.00%), Postives = 36/50 (72.00%), Query Frame = 3 
Query:   60 EQTLRQACSQGFPGSARCVQSFDDSLDSASRKTYRISLRSSS*WEPRHPS 209
            E  L + C +  PG A CVQ FDDSL+SA R TYRISLRSSS  EPR+PS
Sbjct:    2 EAPLEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPS 51
[Close]
BLAST of mRNA_A-nodosum_M_contig10944.2.1 vs. uniprot
Match: R1D5C4_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D5C4_EMIHU)

HSP 1 Score: 61.2 bits (147), Expect = 3.350e-10
Identity = 32/50 (64.00%), Postives = 36/50 (72.00%), Query Frame = 3 
Query:   60 EQTLRQACSQGFPGSARCVQSFDDSLDSASRKTYRISLRSSS*WEPRHPS 209
            E  L + C +  PG A CVQ FDDSL+SA R TYRISLRSSS  EPR+PS
Sbjct:    2 EAPLEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPS 51
[Close]
BLAST of mRNA_A-nodosum_M_contig10944.2.1 vs. uniprot
Match: A0A2H3J453_WOLCO (Uncharacterized protein n=1 Tax=Wolfiporia cocos (strain MD-104) TaxID=742152 RepID=A0A2H3J453_WOLCO)

HSP 1 Score: 58.9 bits (141), Expect = 4.570e-10
Identity = 31/41 (75.61%), Postives = 31/41 (75.61%), Query Frame = 3 
Query:   90 GFPGSARCVQSFDDSLDSASRKTYRISLRSSS*WEPRHPSL 212
            G P  ARCVQ FDDSLDSA   TYRISLRSSS  EPR PSL
Sbjct:    4 GIPRGARCVQRFDDSLDSAIHITYRISLRSSSMREPRDPSL 44
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10944.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1E7F0G0_9STRA1.490e-1667.31Uncharacterized protein (Fragment) n=2 Tax=Fragila... [more]
B8CEF4_THAPS1.140e-1572.00Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
K0S3C5_THAOC1.920e-1554.41Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A524MI88_9PROT2.590e-1465.38Uncharacterized protein n=1 Tax=Nitrosomonadales b... [more]
R1EX34_EMIHU2.440e-1064.00Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
R1ESX1_EMIHU2.500e-1064.00Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
K5UIC4_PHACS2.860e-1075.61Uncharacterized protein n=1 Tax=Phanerochaete carn... [more]
R1D6I6_EMIHU3.350e-1064.00Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
R1D5C4_EMIHU3.350e-1064.00Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A2H3J453_WOLCO4.570e-1075.61Uncharacterized protein n=1 Tax=Wolfiporia cocos (... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10944contigA-nodosum_M_contig10944:3754..3966 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog35128.Thaps30335
Model size213
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.87e-16
EggNOG OGs2F8R5@1|root,2T9VT@2759|Eukaryota,2XH3Y@2836|Bacillariophyta
Cds size213
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866478.9369602-CDS-A-nodosum_M_contig10944:3753..39661680866478.9369602-CDS-A-nodosum_M_contig10944:3753..3966Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10944 3754..3966 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10944.2.1prot_A-nodosum_M_contig10944.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10944 3754..3966 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10944.2.1

>prot_A-nodosum_M_contig10944.2.1 ID=prot_A-nodosum_M_contig10944.2.1|Name=mRNA_A-nodosum_M_contig10944.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=71bp
TLIVRQTPPTGGRRRLAIGVSRHSDKHAPRDFPEAQGAFKVLMIHWILQV
ARRIAFRCVLHRSGSQDIRR*
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mRNA from alignment at A-nodosum_M_contig10944:3754..3966-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10944.2.1 ID=mRNA_A-nodosum_M_contig10944.2.1|Name=mRNA_A-nodosum_M_contig10944.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at A-nodosum_M_contig10944:3754..3966- (Ascophyllum nodosum dioecious)
ACACTCATAGTCCGCCAGACGCCCCCGACCGGAGGCCGGAGACGACTAGC
GATTGGCGTGAGCAGACACTCCGACAAGCATGCTCCCAGGGATTTCCCGG
AAGCGCAAGGTGCGTTCAAAGTTTTGATGATTCACTGGATTCTGCAAGTC
GCAAGACGTATCGCATTTCGCTGCGTTCTTCATCGTAGTGGGAGCCAAGA
CATCCGTCGCTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10944:3754..3966-

>mRNA_A-nodosum_M_contig10944.2.1 ID=mRNA_A-nodosum_M_contig10944.2.1|Name=mRNA_A-nodosum_M_contig10944.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=213bp|location=Sequence derived from alignment at A-nodosum_M_contig10944:3754..3966- (Ascophyllum nodosum dioecious)
ACACTCATAGTCCGCCAGACGCCCCCGACCGGAGGCCGGAGACGACTAGC
GATTGGCGTGAGCAGACACTCCGACAAGCATGCTCCCAGGGATTTCCCGG
AAGCGCAAGGTGCGTTCAAAGTTTTGATGATTCACTGGATTCTGCAAGTC
GCAAGACGTATCGCATTTCGCTGCGTTCTTCATCGTAGTGGGAGCCAAGA
CATCCGTCGCTGA
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